Coastal topography drives genetic structure in marine mussels
- Nicastro, Katy R, Zardi, Gerardo I, McQuaid, Christopher D, Teske, Peter R, Barker, Nigel P
- Authors: Nicastro, Katy R , Zardi, Gerardo I , McQuaid, Christopher D , Teske, Peter R , Barker, Nigel P
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445634 , vital:74409 , https://doi.org/10.3354/meps07607
- Description: Understanding population connectivity is fundamental to ecology, and, for sedentary organisms, connectivity is achieved through larval dispersal. We tested whether coastal topography influences genetic structure in Perna perna mussels by comparing populations inside bays and on the open coast. Higher hydrodynamic stress on the open coast produces higher mortality and thus genetic turnover. Populations on the open coast had fewer private haplotypes and less genetic endemism than those inside bays. Gene flow analysis showed that bays act as source populations, with greater migration rates out of bays than into them. Differences in genetic structure on scales of 10s of kilometres show that coastal configuration strongly affects selection, larval dispersal and haplotype diversity.
- Full Text: false
- Date Issued: 2008
- Authors: Nicastro, Katy R , Zardi, Gerardo I , McQuaid, Christopher D , Teske, Peter R , Barker, Nigel P
- Date: 2008
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/445634 , vital:74409 , https://doi.org/10.3354/meps07607
- Description: Understanding population connectivity is fundamental to ecology, and, for sedentary organisms, connectivity is achieved through larval dispersal. We tested whether coastal topography influences genetic structure in Perna perna mussels by comparing populations inside bays and on the open coast. Higher hydrodynamic stress on the open coast produces higher mortality and thus genetic turnover. Populations on the open coast had fewer private haplotypes and less genetic endemism than those inside bays. Gene flow analysis showed that bays act as source populations, with greater migration rates out of bays than into them. Differences in genetic structure on scales of 10s of kilometres show that coastal configuration strongly affects selection, larval dispersal and haplotype diversity.
- Full Text: false
- Date Issued: 2008
Oceanic dispersal barriers, adaptation and larval retention: an interdisciplinary assessment of potential factors maintaining a phylogeographic break between sister lineages of an African prawn
- Teske, Peter R, Papadopoulos, Isabelle, Newman, Brent K, Dworschak, Peter C, McQuaid, Christopher D, Barker, Nigel P
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Newman, Brent K , Dworschak, Peter C , McQuaid, Christopher D , Barker, Nigel P
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6546 , http://hdl.handle.net/10962/d1006002 , http://dx.doi.org/10.1186/1471-2148-8-341
- Description: Background. Genetic breaks separating regional lineages of marine organisms with potentially high broadcasting abilities are generally attributed either to dispersal barriers such as currents or upwelling, or to behavioural strategies promoting self-recruitment. We investigated whether such patterns could potentially also be explained by adaptations to different environmental conditions by studying two morphologically distinguishable genetic lineages of the estuarine mudprawn Upogebia africana across a biogeographic disjunction in south-eastern Africa. The study area encompasses a transition between temperate and subtropical biotas, where the warm, southward-flowing Agulhas Current is deflected away from the coast, and its inshore edge is characterised by intermittent upwelling. To determine how this phylogeographic break is maintained, we estimated gene flow among populations in the region, tested for isolation by distance as an indication of larval retention, and reared larvae of the temperate and subtropical lineages at a range of different temperatures. Results. Of four populations sampled, the two northernmost exclusively included the subtropical lineage, a central population had a mixture of both lineages, and the southernmost estuary had only haplotypes of the temperate lineage. No evidence was found for isolation by distance, and gene flow was bidirectional and of similar magnitude among adjacent populations. In both lineages, the optimum temperature for larval development was at about 23°C, but a clear difference was found at lower temperatures. While larvae of the temperate lineage could complete development at temperatures as low as 12°C, those of the subtropical lineage did not complete development below 17°C. Conclusion. The results indicate that both southward dispersal of the subtropical lineage inshore of the Agulhas Current, and its establishment in the temperate province, may be limited primarily by low water temperatures. There is no evidence that the larvae of the temperate lineage would survive less well in the subtropical province than in their native habitat, and their exclusion from this region may be due to a combination of upwelling, short larval duration with limited dispersal potential near the coast, plus transport away from the coast of larvae that become entrained in the Agulhas Current. This study shows how methods from different fields of research (genetics, physiology, oceanography and morphology) can be combined to study phylogeographic patterns.
- Full Text:
- Date Issued: 2008
- Authors: Teske, Peter R , Papadopoulos, Isabelle , Newman, Brent K , Dworschak, Peter C , McQuaid, Christopher D , Barker, Nigel P
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6546 , http://hdl.handle.net/10962/d1006002 , http://dx.doi.org/10.1186/1471-2148-8-341
- Description: Background. Genetic breaks separating regional lineages of marine organisms with potentially high broadcasting abilities are generally attributed either to dispersal barriers such as currents or upwelling, or to behavioural strategies promoting self-recruitment. We investigated whether such patterns could potentially also be explained by adaptations to different environmental conditions by studying two morphologically distinguishable genetic lineages of the estuarine mudprawn Upogebia africana across a biogeographic disjunction in south-eastern Africa. The study area encompasses a transition between temperate and subtropical biotas, where the warm, southward-flowing Agulhas Current is deflected away from the coast, and its inshore edge is characterised by intermittent upwelling. To determine how this phylogeographic break is maintained, we estimated gene flow among populations in the region, tested for isolation by distance as an indication of larval retention, and reared larvae of the temperate and subtropical lineages at a range of different temperatures. Results. Of four populations sampled, the two northernmost exclusively included the subtropical lineage, a central population had a mixture of both lineages, and the southernmost estuary had only haplotypes of the temperate lineage. No evidence was found for isolation by distance, and gene flow was bidirectional and of similar magnitude among adjacent populations. In both lineages, the optimum temperature for larval development was at about 23°C, but a clear difference was found at lower temperatures. While larvae of the temperate lineage could complete development at temperatures as low as 12°C, those of the subtropical lineage did not complete development below 17°C. Conclusion. The results indicate that both southward dispersal of the subtropical lineage inshore of the Agulhas Current, and its establishment in the temperate province, may be limited primarily by low water temperatures. There is no evidence that the larvae of the temperate lineage would survive less well in the subtropical province than in their native habitat, and their exclusion from this region may be due to a combination of upwelling, short larval duration with limited dispersal potential near the coast, plus transport away from the coast of larvae that become entrained in the Agulhas Current. This study shows how methods from different fields of research (genetics, physiology, oceanography and morphology) can be combined to study phylogeographic patterns.
- Full Text:
- Date Issued: 2008
The snake family Psammophiidae (Reptilia: Serpentes): phylogenetics and species delimitation in the African sand snakes (Psammophis Boie, 1825) and allied genera
- Kelly, Christopher M R, Barker, Nigel P, Villet, Martin H, Broadley, Donald G, Branch, William R
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H , Broadley, Donald G , Branch, William R
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6522 , http://hdl.handle.net/10962/d1005953
- Description: This study constitutes the first evolutionary investigation of the snake family Psammophiidae—the most widespread, most clearly defined, yet perhaps the taxonomically most problematic of Africa's familylevel snake lineages. Little is known of psammophiid evolutionary relationships, and the type genus Psammophis is one of the largest and taxonomically most complex of the African snake genera. Our aims were to reconstruct psammophiid phylogenetic relationships and to improve characterisation of species boundaries in problematic Psammophis species complexes. We used approximately 2500 bases of DNA sequence from the mitochondrial and nuclear genomes, and 114 terminals covering all psammophiid genera and incorporating approximately 75% of recognised species and subspecies. Phylogenetic reconstructions were conducted primarily in a Bayesian framework and we used the Wiens/Penkrot protocol to aid species delimitation. Rhamphiophis is diphyletic, with Rhamphiophis acutus emerging sister to Psammophylax. Consequently we transfer the three subspecies of Rhamphiophis acutus to the genus Psammophylax. The monotypic genus Dipsina is sister to Psammophis. The two species of Dromophis occupy divergent positions deeply nested within Psammophis, and we therefore relegate Dromophis to the synonymy of Psammophis. Our results allow division of the taxonomically problematic Psammophis 'sibilans' species complex into two monophyletic entities, provisionally named the 'phillipsii' and 'subtaeniatus' complexes. Within these two clades we found support for the status of many existing species, but not for a distinction between P.p. phillipsii and P. mossambicus. Additionally, P. cf. phillipsii occidentalis deserves species status as the sister taxon of P. brevirostris.
- Full Text:
- Date Issued: 2008
- Authors: Kelly, Christopher M R , Barker, Nigel P , Villet, Martin H , Broadley, Donald G , Branch, William R
- Date: 2008
- Language: English
- Type: Article
- Identifier: vital:6522 , http://hdl.handle.net/10962/d1005953
- Description: This study constitutes the first evolutionary investigation of the snake family Psammophiidae—the most widespread, most clearly defined, yet perhaps the taxonomically most problematic of Africa's familylevel snake lineages. Little is known of psammophiid evolutionary relationships, and the type genus Psammophis is one of the largest and taxonomically most complex of the African snake genera. Our aims were to reconstruct psammophiid phylogenetic relationships and to improve characterisation of species boundaries in problematic Psammophis species complexes. We used approximately 2500 bases of DNA sequence from the mitochondrial and nuclear genomes, and 114 terminals covering all psammophiid genera and incorporating approximately 75% of recognised species and subspecies. Phylogenetic reconstructions were conducted primarily in a Bayesian framework and we used the Wiens/Penkrot protocol to aid species delimitation. Rhamphiophis is diphyletic, with Rhamphiophis acutus emerging sister to Psammophylax. Consequently we transfer the three subspecies of Rhamphiophis acutus to the genus Psammophylax. The monotypic genus Dipsina is sister to Psammophis. The two species of Dromophis occupy divergent positions deeply nested within Psammophis, and we therefore relegate Dromophis to the synonymy of Psammophis. Our results allow division of the taxonomically problematic Psammophis 'sibilans' species complex into two monophyletic entities, provisionally named the 'phillipsii' and 'subtaeniatus' complexes. Within these two clades we found support for the status of many existing species, but not for a distinction between P.p. phillipsii and P. mossambicus. Additionally, P. cf. phillipsii occidentalis deserves species status as the sister taxon of P. brevirostris.
- Full Text:
- Date Issued: 2008
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