Maximum likelihood and Bayesian approaches to stock assessment when data are questionable
- Booth, Anthony J, Quinn II, T J
- Authors: Booth, Anthony J , Quinn II, T J
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6764 , http://hdl.handle.net/10962/d1007962
- Description: This study examines the use of age-structured maximum likelihood and Bayesian approaches for stock assessment of the Namibian monkfish, Lophius vomerinus, resource with questionable data, in which time series are short, abundance indices are variable, and research data conflict with commercial data. Bayesian approaches with both noninformative and informative priors are investigated to determine if they enhance estimation stability. Three data scenarios are assessed: commercial and research survey data, research survey data only, and commercial data only. Both statistical approaches show that resource abundance has decreased with exploitable biomass estimated at approximately 44% of pristine levels. The maximum likelihood and the Bayesian approach with noninformative priors result in similar estimates. As the abundance data contained little information pertaining to possible density dependence within the stock–recruit relationship, only a Bayesian approach with informative priors reduces uncertainty in the steepness parameter h. Estimated management quantities are sensitive both to the set of data sources and whether prior information was informative or not. The strengths of the Bayesian approach include the integration of prior information with uncertain data, the exploration of data conflicts, and the ability to show the uncertainty in estimates of management parameters. Its weakness is that estimation stability is dependent on the choice of priors, which alters some posterior distributions of management quantities.
- Full Text:
- Date Issued: 2006
- Authors: Booth, Anthony J , Quinn II, T J
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6764 , http://hdl.handle.net/10962/d1007962
- Description: This study examines the use of age-structured maximum likelihood and Bayesian approaches for stock assessment of the Namibian monkfish, Lophius vomerinus, resource with questionable data, in which time series are short, abundance indices are variable, and research data conflict with commercial data. Bayesian approaches with both noninformative and informative priors are investigated to determine if they enhance estimation stability. Three data scenarios are assessed: commercial and research survey data, research survey data only, and commercial data only. Both statistical approaches show that resource abundance has decreased with exploitable biomass estimated at approximately 44% of pristine levels. The maximum likelihood and the Bayesian approach with noninformative priors result in similar estimates. As the abundance data contained little information pertaining to possible density dependence within the stock–recruit relationship, only a Bayesian approach with informative priors reduces uncertainty in the steepness parameter h. Estimated management quantities are sensitive both to the set of data sources and whether prior information was informative or not. The strengths of the Bayesian approach include the integration of prior information with uncertain data, the exploration of data conflicts, and the ability to show the uncertainty in estimates of management parameters. Its weakness is that estimation stability is dependent on the choice of priors, which alters some posterior distributions of management quantities.
- Full Text:
- Date Issued: 2006
Spatio-temporal patterns in maturation of the chokka squid (Loligo vulgaris reynaudii) off the coast of South Africa
- Olyott, L J H, Sauer, Warwick H H, Booth, Anthony J
- Authors: Olyott, L J H , Sauer, Warwick H H , Booth, Anthony J
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6763 , http://hdl.handle.net/10962/d1007930
- Description: Knowledge of the temporal and spatial characteristics of chokka squid (Loligo vulgaris reynaudii) biology in South African waters is limited, so the possibility of there being a geographically fragmented stock was examined by investigating the distribution of maturity patterns for the species, covering all known spawning areas and using both historical and recent data. Gonadosomatic indices (GSI) varied between year-round consistency and apparent seasonal peaks in both summer and winter; there was no clear spatial pattern. Monthly percentage maturity provided further evidence for two peak reproductive periods each year, although mature squid were present throughout. Sex ratios demonstrated great variability between different areas and life history stages. Male-biased sex ratios were only apparent on the inshore spawning grounds and ranged between 1.118:1 and 4.267:1. Size at sexual maturity was also seasonal, squid maturing smaller in winter/spring than in summer/autumn. Also, squid in the east matured smaller than squid in the west. Although the results from the present study do not provide conclusive evidence of distinct geographic populations, squid likely spawn over a significantly larger area of the Agulhas Bank than previously estimated, and squid on the west coast of South Africa may return to spawn on the western portion of the Agulhas Bank. It remains likely, however, that the east and west coast populations are a single stock and that migration of juveniles to the west coast and their subsequent return as sub-adults is an integral but non-essential and variable part of the life history.
- Full Text:
- Date Issued: 2006
- Authors: Olyott, L J H , Sauer, Warwick H H , Booth, Anthony J
- Date: 2006
- Language: English
- Type: Article
- Identifier: vital:6763 , http://hdl.handle.net/10962/d1007930
- Description: Knowledge of the temporal and spatial characteristics of chokka squid (Loligo vulgaris reynaudii) biology in South African waters is limited, so the possibility of there being a geographically fragmented stock was examined by investigating the distribution of maturity patterns for the species, covering all known spawning areas and using both historical and recent data. Gonadosomatic indices (GSI) varied between year-round consistency and apparent seasonal peaks in both summer and winter; there was no clear spatial pattern. Monthly percentage maturity provided further evidence for two peak reproductive periods each year, although mature squid were present throughout. Sex ratios demonstrated great variability between different areas and life history stages. Male-biased sex ratios were only apparent on the inshore spawning grounds and ranged between 1.118:1 and 4.267:1. Size at sexual maturity was also seasonal, squid maturing smaller in winter/spring than in summer/autumn. Also, squid in the east matured smaller than squid in the west. Although the results from the present study do not provide conclusive evidence of distinct geographic populations, squid likely spawn over a significantly larger area of the Agulhas Bank than previously estimated, and squid on the west coast of South Africa may return to spawn on the western portion of the Agulhas Bank. It remains likely, however, that the east and west coast populations are a single stock and that migration of juveniles to the west coast and their subsequent return as sub-adults is an integral but non-essential and variable part of the life history.
- Full Text:
- Date Issued: 2006
- «
- ‹
- 1
- ›
- »