Browsing as a demographic bottleneck in a semi-arid savanna: the effect of size and age on compensatory responses of Vachellia karroo seedlings after simulated herbivory
- Authors: Perumal, Lavinia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4899 , vital:20741
- Description: Savannas are characterised by a continuous grass layer with scattered trees at varying densities. This vegetation structure is determined by several interacting factors, including fire, herbivory, resource competition and atmospheric CO2 concentration. The preservation of savanna biomes is important and a shift towards a woody biome threatens savanna globally. Bush encroachment which describes the shift towards domination of savannas by C3 woody plants, is especially acute in southern Africa. In semi-arid rangelands, encroachment progresses to dense thickets dominated by thorny and unpalatable bushes and trees. There is evidence that bush encroachment is driven by a reduction in fire and browsing events as well as their interaction. Despite browsing having strong effects on African savannas its isolated role in maintaining tree-grass coexistence has not received as much attention as the role of fire. Therefore the overall aim of this study was to examine the effects of browsing on seedlings of a commonly encroaching species, Vachellia karroo. Browsing was hypothesized to be a demographic release bottleneck for bush encroachment in a semiarid (MAP ~550mm) savanna in the Eastern Cape of South Africa, where fire has been historically rare. In a single study I explored the fate of V. karroo seedlings (less than a year old) following browsing in sub canopy and inter canopy microhabitats. Additionally, I explored how the fate of a seedling changed under high and low tree cover. Firstly, I investigated the type, intensity and frequency of herbivory, from both small and large herbivores, which seedlings were subjected to. Results revealed that browsing was severe and frequent with the majority of seedlings browsed more than twice over a 12 month period. Large browsers such as kudu and impala caused high seedling mortality (46%) while smaller browsers such as invertebrates were more effective at suppressing growth. Microhabitat had little impact on seedling survival, but significantly influenced plant compensatory growth. Reduced seedling growth following browsing was observed in the sub-canopy in comparison to seedling growth in full sunlight in the intercanopy, suggesting V.karroo may be shade intolerant. Secondly, the effect of tree cover on browsed seedlings was determined by quantifying browsing frequency and intensity at high and low tree cover. No differences in browsing intensity and frequency were observed between high and low tree cover. However, high tree cover due to bush encroachment limited seedling above ground growth. The aim of the second study was to investigate how V.karroo survival and growth were influenced by its age and size following simulated browsing. I explored this aim through field and greenhouse experiments. I was particularly interested in testing how plant sensitivity to varying defoliation intensities of repeated browsing varied with plant age (known ages of 6, 12, 16 and 30 weeks). There were large differences in mortality between the different age groups. Furthermore, age interacted with repeated browsing and negatively influenced seedling survival and regrowth. Older seedlings (16 and 30 week old) had greater survival and higher browsing frequencies resulted in greater mortality and reduced growth. The threshold age after which seedlings become more tolerant to herbivory occurs at an age of 28 weeks. Seedlings less than six weeks old experiencing intense (100 % defoliation)browsing had a very low probability (33%) of survival following just a single defoliation. Interestingly, all 16 week old seedlings regrew most of their foliage following a moderate (50%) defoliation with some plants overcompensating for leaf loss. The field study revealed two distinct demographic stages based on age and size (seedlings< 9 mm and saplings >9 mm in stem basal diameter (SBD)). Browsing had a strong negative effect on seedlings, resulting in reduced investment in leaf biomass. These findings suggest plant size and age can be used as robust predictors of a plants vulnerability to browsing. An increase in tree cover requires successful transitions of seedlings to saplings (also known as release). The results of this study suggest that in semi-arid savannas, browsing can impact tree cover through imposing a release bottleneck for tree seedlings and to lesser extent saplings. By limiting tree growth plants are kept in a disturbance trap and will therefore be exposed to not only browsers but fire. These findings also have important implications for tree-grass coexistence dynamics, suggesting that specific size and browsing thresholds should be considered in savanna management.
- Full Text:
- Date Issued: 2017
- Authors: Perumal, Lavinia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4899 , vital:20741
- Description: Savannas are characterised by a continuous grass layer with scattered trees at varying densities. This vegetation structure is determined by several interacting factors, including fire, herbivory, resource competition and atmospheric CO2 concentration. The preservation of savanna biomes is important and a shift towards a woody biome threatens savanna globally. Bush encroachment which describes the shift towards domination of savannas by C3 woody plants, is especially acute in southern Africa. In semi-arid rangelands, encroachment progresses to dense thickets dominated by thorny and unpalatable bushes and trees. There is evidence that bush encroachment is driven by a reduction in fire and browsing events as well as their interaction. Despite browsing having strong effects on African savannas its isolated role in maintaining tree-grass coexistence has not received as much attention as the role of fire. Therefore the overall aim of this study was to examine the effects of browsing on seedlings of a commonly encroaching species, Vachellia karroo. Browsing was hypothesized to be a demographic release bottleneck for bush encroachment in a semiarid (MAP ~550mm) savanna in the Eastern Cape of South Africa, where fire has been historically rare. In a single study I explored the fate of V. karroo seedlings (less than a year old) following browsing in sub canopy and inter canopy microhabitats. Additionally, I explored how the fate of a seedling changed under high and low tree cover. Firstly, I investigated the type, intensity and frequency of herbivory, from both small and large herbivores, which seedlings were subjected to. Results revealed that browsing was severe and frequent with the majority of seedlings browsed more than twice over a 12 month period. Large browsers such as kudu and impala caused high seedling mortality (46%) while smaller browsers such as invertebrates were more effective at suppressing growth. Microhabitat had little impact on seedling survival, but significantly influenced plant compensatory growth. Reduced seedling growth following browsing was observed in the sub-canopy in comparison to seedling growth in full sunlight in the intercanopy, suggesting V.karroo may be shade intolerant. Secondly, the effect of tree cover on browsed seedlings was determined by quantifying browsing frequency and intensity at high and low tree cover. No differences in browsing intensity and frequency were observed between high and low tree cover. However, high tree cover due to bush encroachment limited seedling above ground growth. The aim of the second study was to investigate how V.karroo survival and growth were influenced by its age and size following simulated browsing. I explored this aim through field and greenhouse experiments. I was particularly interested in testing how plant sensitivity to varying defoliation intensities of repeated browsing varied with plant age (known ages of 6, 12, 16 and 30 weeks). There were large differences in mortality between the different age groups. Furthermore, age interacted with repeated browsing and negatively influenced seedling survival and regrowth. Older seedlings (16 and 30 week old) had greater survival and higher browsing frequencies resulted in greater mortality and reduced growth. The threshold age after which seedlings become more tolerant to herbivory occurs at an age of 28 weeks. Seedlings less than six weeks old experiencing intense (100 % defoliation)browsing had a very low probability (33%) of survival following just a single defoliation. Interestingly, all 16 week old seedlings regrew most of their foliage following a moderate (50%) defoliation with some plants overcompensating for leaf loss. The field study revealed two distinct demographic stages based on age and size (seedlings< 9 mm and saplings >9 mm in stem basal diameter (SBD)). Browsing had a strong negative effect on seedlings, resulting in reduced investment in leaf biomass. These findings suggest plant size and age can be used as robust predictors of a plants vulnerability to browsing. An increase in tree cover requires successful transitions of seedlings to saplings (also known as release). The results of this study suggest that in semi-arid savannas, browsing can impact tree cover through imposing a release bottleneck for tree seedlings and to lesser extent saplings. By limiting tree growth plants are kept in a disturbance trap and will therefore be exposed to not only browsers but fire. These findings also have important implications for tree-grass coexistence dynamics, suggesting that specific size and browsing thresholds should be considered in savanna management.
- Full Text:
- Date Issued: 2017
Buchu and Bobotie in the Boland : culinary heritage in Franschhoek, Western Cape
- Authors: Deavin, Candace
- Date: 2017
- Subjects: Food habits -- South Africa -- Franschhoek -- Cross-cultural studies Plants, Edible -- South Africa -- Franschhoek
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10948/22254 , vital:29923
- Description: From a confit tomato and potato tumbleweed with buchu to a cured snoek terrine rolled in wilde kruie and Cape bobotie puff pastry with blatjang, chefs that mix indigenous plants and local cuisine with European inspiration and training have proved popular in Franschhoek’s restaurants. In this boland town, the particular constructions of heritage through food, not only showcases regional flavours, but gestures towards the search for an elusive place-based ‘South African’ cuisine that is seen to be rooted in the land. Harkening back to old culinary practices and drawing from their own heritages, Franschhoek’s chefs are foraging, butchering, gathering, growing, fermenting, pickling and cooking over open fires with renewed vigour as they attempt to ground their cuisine, and indeed, themselves, in the soil around them. This thesis considers how, through the culinary repertoire of chefs in Franschhoek, food is constructed as heritage. Within this I look at what heritages are considered desirable, how food’s sensory and symbolic properties are used to their full potential, and who is behind these constructions of culinary heritage. Following on from this, I explore postcolonial and post-apartheid anxieties of place and belonging, as well as desired and emergent identities that are expressed through this culinary heritage.
- Full Text:
- Date Issued: 2017
- Authors: Deavin, Candace
- Date: 2017
- Subjects: Food habits -- South Africa -- Franschhoek -- Cross-cultural studies Plants, Edible -- South Africa -- Franschhoek
- Language: English
- Type: Thesis , Masters , MA
- Identifier: http://hdl.handle.net/10948/22254 , vital:29923
- Description: From a confit tomato and potato tumbleweed with buchu to a cured snoek terrine rolled in wilde kruie and Cape bobotie puff pastry with blatjang, chefs that mix indigenous plants and local cuisine with European inspiration and training have proved popular in Franschhoek’s restaurants. In this boland town, the particular constructions of heritage through food, not only showcases regional flavours, but gestures towards the search for an elusive place-based ‘South African’ cuisine that is seen to be rooted in the land. Harkening back to old culinary practices and drawing from their own heritages, Franschhoek’s chefs are foraging, butchering, gathering, growing, fermenting, pickling and cooking over open fires with renewed vigour as they attempt to ground their cuisine, and indeed, themselves, in the soil around them. This thesis considers how, through the culinary repertoire of chefs in Franschhoek, food is constructed as heritage. Within this I look at what heritages are considered desirable, how food’s sensory and symbolic properties are used to their full potential, and who is behind these constructions of culinary heritage. Following on from this, I explore postcolonial and post-apartheid anxieties of place and belonging, as well as desired and emergent identities that are expressed through this culinary heritage.
- Full Text:
- Date Issued: 2017
Bush clumps as indicators of thresholds of change in Arid Thicket mosaic piospheres
- Authors: Schmidt, Anton George
- Date: 2017
- Subjects: Biodiversity conservation Ecological processes
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/20811 , vital:29403
- Description: In the literature, Arid Thicket transformation by domestic meso-herbivores is purported to follow a state-and-transition model, whereby the ecosystem is initially resilient to herbivory until some threshold is crossed, where after there is a rapid shift to a new alternative stable state. My study represents a first attempt to verify this hypothesis by searching for evidence of stable ecosystem states separated by structural, functional and degradation thresholds in Pruim-Spekboomveld, a variation of Arid Thicket found in the southern Cape of South Africa. In this variation, thicket bush clumps ranging in size from approximately 1 m2 to 100 m2 are interspersed in a matrix of Succulent Karoo vegetation. I correlate structural and functional attributes of the thicket bush clumps and the soil environment beneath them (indicators of ecosystem function) to distance from artificial watering points in four piosphere treatments that have had a different rangeland management history. I mostly fit linear, exponential and sigmoid regression models to my data and use Akaike’s Information Criterion to select the best fitting model. When analysing data on changes in the variation of vegetation production with distance from water using the Normalized Difference Vegetation Index, I additionally fit Generalized Additive Models to the data to take into account more complex predicted patterns of change. Furthermore, I compare the end regions of my data in the piosphere treatments to each other and to similar data collected in a transformed and untransformed reference site. I use both the pattern and extent of transformation within and between the treatments and the reference sites, to verify the existence of stable states and structural, functional and degradation thresholds. I also subject my entire dataset to multivariate analysis using ordination and permutation procedures, in an attempt to corroborate my results from the univariate analysis and to assess the response of bush clump community composition to herbivory. My results indicate that at the scale of a bush clump, a threshold reduction in species richness, functional type diversity, succulent shrub redundancy and cover, palatable shrub cover and bush clump leaf mass below 1.5 m occurs in regions intensively used by domestic meso-herbivores. Furthermore, at the landscape scale there is a threshold reduction in canopy tree cover and bush clump density. In addition to these structural threshold changes, results from a Landscape Function Analysis indicate that soil nutrient cycling, soil water infiltration and soil stability thresholds are crossed at the landscape scale. The soil nutrient cycling threshold is affirmed by soil chemical analyses which indicate that the most rested treatment in the study area has low carbon and nitrogen levels. Furthermore, the keystone species, Portulacaria afra, is unable to re-establish itself in any of the treatments. High pH and potassium levels in all the treatments, relative to the untransformed reference site, indicate that Portulacaria afra (which prefers moderate soil conditions) is unlikely to re-establish in the study area. This finding suggests that all my treatments have crossed a degradation threshold and therefore represent an alternative stable state to the untransformed reference site. My multivariate analysis supports this finding and further indicates that the sampling zones within 25 m of the watering points in the most utilized treatments have crossed a second degradation threshold. This finding is supported by my results that indicate that structural and function thresholds (related to the size, density and ability of bush clumps to capture and retain soil resources) have been crossed. Furthermore, excessively high concentrations of base cations in these sampling zones, relative to the untransformed reference site, affirm the crossing of a degradation threshold. My results on the changes in the variation of vegetation production with distance from water using the Normalized Difference Vegetation Index, support the growing body of evidence in the literature that suggests that increases in the variance of ecosystem processes and services are important indicators of impending ecological thresholds. In general, my findings support the prediction in the literature that domestic meso-herbivore induced transformation of Arid Mosaic Thicket will follow a state-andtransition model.
- Full Text:
- Date Issued: 2017
- Authors: Schmidt, Anton George
- Date: 2017
- Subjects: Biodiversity conservation Ecological processes
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/20811 , vital:29403
- Description: In the literature, Arid Thicket transformation by domestic meso-herbivores is purported to follow a state-and-transition model, whereby the ecosystem is initially resilient to herbivory until some threshold is crossed, where after there is a rapid shift to a new alternative stable state. My study represents a first attempt to verify this hypothesis by searching for evidence of stable ecosystem states separated by structural, functional and degradation thresholds in Pruim-Spekboomveld, a variation of Arid Thicket found in the southern Cape of South Africa. In this variation, thicket bush clumps ranging in size from approximately 1 m2 to 100 m2 are interspersed in a matrix of Succulent Karoo vegetation. I correlate structural and functional attributes of the thicket bush clumps and the soil environment beneath them (indicators of ecosystem function) to distance from artificial watering points in four piosphere treatments that have had a different rangeland management history. I mostly fit linear, exponential and sigmoid regression models to my data and use Akaike’s Information Criterion to select the best fitting model. When analysing data on changes in the variation of vegetation production with distance from water using the Normalized Difference Vegetation Index, I additionally fit Generalized Additive Models to the data to take into account more complex predicted patterns of change. Furthermore, I compare the end regions of my data in the piosphere treatments to each other and to similar data collected in a transformed and untransformed reference site. I use both the pattern and extent of transformation within and between the treatments and the reference sites, to verify the existence of stable states and structural, functional and degradation thresholds. I also subject my entire dataset to multivariate analysis using ordination and permutation procedures, in an attempt to corroborate my results from the univariate analysis and to assess the response of bush clump community composition to herbivory. My results indicate that at the scale of a bush clump, a threshold reduction in species richness, functional type diversity, succulent shrub redundancy and cover, palatable shrub cover and bush clump leaf mass below 1.5 m occurs in regions intensively used by domestic meso-herbivores. Furthermore, at the landscape scale there is a threshold reduction in canopy tree cover and bush clump density. In addition to these structural threshold changes, results from a Landscape Function Analysis indicate that soil nutrient cycling, soil water infiltration and soil stability thresholds are crossed at the landscape scale. The soil nutrient cycling threshold is affirmed by soil chemical analyses which indicate that the most rested treatment in the study area has low carbon and nitrogen levels. Furthermore, the keystone species, Portulacaria afra, is unable to re-establish itself in any of the treatments. High pH and potassium levels in all the treatments, relative to the untransformed reference site, indicate that Portulacaria afra (which prefers moderate soil conditions) is unlikely to re-establish in the study area. This finding suggests that all my treatments have crossed a degradation threshold and therefore represent an alternative stable state to the untransformed reference site. My multivariate analysis supports this finding and further indicates that the sampling zones within 25 m of the watering points in the most utilized treatments have crossed a second degradation threshold. This finding is supported by my results that indicate that structural and function thresholds (related to the size, density and ability of bush clumps to capture and retain soil resources) have been crossed. Furthermore, excessively high concentrations of base cations in these sampling zones, relative to the untransformed reference site, affirm the crossing of a degradation threshold. My results on the changes in the variation of vegetation production with distance from water using the Normalized Difference Vegetation Index, support the growing body of evidence in the literature that suggests that increases in the variance of ecosystem processes and services are important indicators of impending ecological thresholds. In general, my findings support the prediction in the literature that domestic meso-herbivore induced transformation of Arid Mosaic Thicket will follow a state-andtransition model.
- Full Text:
- Date Issued: 2017
Calibration and imaging with variable radio sources
- Authors: Mbou Sob, Ulrich Armel
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/37977 , vital:24721
- Description: Calibration of radio interferometric data is one of the most important steps that are required to produce high dynamic range radio maps with high fidelity. However, naive calibration (inaccurate knowledge of the sky and instruments) leads to the formation of calibration artefacts: the generation of spurious sources and the deformations in the structure of extended sources. A particular class of calibration artefacts, called ghost sources, which results from calibration with incomplete sky models has been extensively studied by Grobler et al. (2014, 2016) and Wijnholds et al. (2016). They developed a framework which can be used to predict the fluxes and positions of ghost sources. This work uses the approach initiated by these authors to study the calibration artefacts and ghost sources that are produced when variable sources are not considered in sky models during calibration. This work investigates both long-term and short-term variability and uses the root mean square (rms) and power spectrum as metrics to evaluate the “quality” of the residual visibilities obtained through calibration. We show that the overestimation and underestimation of source flux density during calibration produces similar but symmetrically opposite results. We show that calibration artefacts from sky model errors are not normally distributed. This prevents them from being removed by employing advanced techniques, such as stacking. The power spectrums measured from the residuals with a variable source was significantly higher than those from residuals without a variable source. This implies advanced calibration techniques and sky model completeness will be required for studies such as probing the Epoch of Reoinization, where we seek to detect faint signals below thermal noise.
- Full Text:
- Date Issued: 2017
- Authors: Mbou Sob, Ulrich Armel
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/37977 , vital:24721
- Description: Calibration of radio interferometric data is one of the most important steps that are required to produce high dynamic range radio maps with high fidelity. However, naive calibration (inaccurate knowledge of the sky and instruments) leads to the formation of calibration artefacts: the generation of spurious sources and the deformations in the structure of extended sources. A particular class of calibration artefacts, called ghost sources, which results from calibration with incomplete sky models has been extensively studied by Grobler et al. (2014, 2016) and Wijnholds et al. (2016). They developed a framework which can be used to predict the fluxes and positions of ghost sources. This work uses the approach initiated by these authors to study the calibration artefacts and ghost sources that are produced when variable sources are not considered in sky models during calibration. This work investigates both long-term and short-term variability and uses the root mean square (rms) and power spectrum as metrics to evaluate the “quality” of the residual visibilities obtained through calibration. We show that the overestimation and underestimation of source flux density during calibration produces similar but symmetrically opposite results. We show that calibration artefacts from sky model errors are not normally distributed. This prevents them from being removed by employing advanced techniques, such as stacking. The power spectrums measured from the residuals with a variable source was significantly higher than those from residuals without a variable source. This implies advanced calibration techniques and sky model completeness will be required for studies such as probing the Epoch of Reoinization, where we seek to detect faint signals below thermal noise.
- Full Text:
- Date Issued: 2017
Cape gannets in contrasting environments: ehaviour, demographics and indicators of environmental change
- Authors: Ryklief, Rabiah
- Date: 2017
- Subjects: Endemic birds -- South Africa Marine pollution -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/21167 , vital:29452
- Description: Marine communities represent biological networks, where physical and chemical changes in the marine environment can influence the physiology and behaviour of marine organisms. Stochastic marine conditions can alter key biological interactions and thus, influence the mechanisms that underpin population demography and phenotypic plasticity. Marine top predators, such as seabirds, are often controlled by bottom-up processes and their ability to cope with variable ocean conditions lies in their physiological and behavioural response to such perturbations. Seabirds are central-place foragers during the breeding season making them particularly vulnerable to environmental fluctuations as they face constrains associated with reproductive effort in addition to self-maintenance. The Cape gannet Morus capensis is a medium-sized pelagic seabird that is endemic to southern Africa. The Cape gannet has experienced considerable change in population distribution and abundance over the past 50 years. These changes have been linked to a combination of fishing pressure and climate-mediated regime shifts of their preferred prey, i.e. sardine Sardinops sagax and anchovy ngraulis encrasicolus. Historically, Malgas Island was the largest Cape gannet colony in South Africa. However, it is now in a state of population decline, despite its occurrence within one of the most productive upwelling systems in the world, the Benguela Current. At present, Bird Island is the largest Cape gannet colony and has recently stabilised, despite regular immigration of gannets from the west coast. Furthermore, Bird Island lies within the Agulhas bioregion and is subject to low levels of productivity from the nutrient-poor Agulhas current. Malgas and Bird islands are the two most populous of the six extant Cape gannet colonies. Birds at these colonies provided a natural experiment due to the contrasting population trajectories and environmental conditions at their colonies. The foraging ecology and behaviour of Cape gannets were studied during the breeding season to assess the mechanistic links connecting climate and fisheries to population demography. Cape gannets displayed considerable inter-annual variation in foraging effort and distribution across a five-year period. This highlights the importance of long-term datasets to contextualise the degree of natural variation within a species, as well as considerations for conservation management. For the first time, oceanographic variables such as sea surface temperature and chlorophyll-a, indices that reflect marine productivity, were used to predict Cape gannet foraging distribution. Furthermore, Cape gannets at Bird Island had an energy budget deficit in a year when foraging effort was much higher in comparison to what was observed at Malgas Island. This in turn was linked to the first identification of nutritional stress in a Sulid species. Reasons for this include a combination of higher intra-specific competition in conjunction with a lower energetic content of referential prey species at Bird Island. Foraging effort showed more variability at Malgas Island in comparison to Bird Island, likely due to Malgas Island gannets often taking two short foraging trips a day, whereas Bird Island gannets often spent the night at sea. Some degree of phenotypic plasticity was evidenced by substantial variations across breeding seasons and ocean basins in foraging effort and behaviour.
- Full Text:
- Date Issued: 2017
- Authors: Ryklief, Rabiah
- Date: 2017
- Subjects: Endemic birds -- South Africa Marine pollution -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/21167 , vital:29452
- Description: Marine communities represent biological networks, where physical and chemical changes in the marine environment can influence the physiology and behaviour of marine organisms. Stochastic marine conditions can alter key biological interactions and thus, influence the mechanisms that underpin population demography and phenotypic plasticity. Marine top predators, such as seabirds, are often controlled by bottom-up processes and their ability to cope with variable ocean conditions lies in their physiological and behavioural response to such perturbations. Seabirds are central-place foragers during the breeding season making them particularly vulnerable to environmental fluctuations as they face constrains associated with reproductive effort in addition to self-maintenance. The Cape gannet Morus capensis is a medium-sized pelagic seabird that is endemic to southern Africa. The Cape gannet has experienced considerable change in population distribution and abundance over the past 50 years. These changes have been linked to a combination of fishing pressure and climate-mediated regime shifts of their preferred prey, i.e. sardine Sardinops sagax and anchovy ngraulis encrasicolus. Historically, Malgas Island was the largest Cape gannet colony in South Africa. However, it is now in a state of population decline, despite its occurrence within one of the most productive upwelling systems in the world, the Benguela Current. At present, Bird Island is the largest Cape gannet colony and has recently stabilised, despite regular immigration of gannets from the west coast. Furthermore, Bird Island lies within the Agulhas bioregion and is subject to low levels of productivity from the nutrient-poor Agulhas current. Malgas and Bird islands are the two most populous of the six extant Cape gannet colonies. Birds at these colonies provided a natural experiment due to the contrasting population trajectories and environmental conditions at their colonies. The foraging ecology and behaviour of Cape gannets were studied during the breeding season to assess the mechanistic links connecting climate and fisheries to population demography. Cape gannets displayed considerable inter-annual variation in foraging effort and distribution across a five-year period. This highlights the importance of long-term datasets to contextualise the degree of natural variation within a species, as well as considerations for conservation management. For the first time, oceanographic variables such as sea surface temperature and chlorophyll-a, indices that reflect marine productivity, were used to predict Cape gannet foraging distribution. Furthermore, Cape gannets at Bird Island had an energy budget deficit in a year when foraging effort was much higher in comparison to what was observed at Malgas Island. This in turn was linked to the first identification of nutritional stress in a Sulid species. Reasons for this include a combination of higher intra-specific competition in conjunction with a lower energetic content of referential prey species at Bird Island. Foraging effort showed more variability at Malgas Island in comparison to Bird Island, likely due to Malgas Island gannets often taking two short foraging trips a day, whereas Bird Island gannets often spent the night at sea. Some degree of phenotypic plasticity was evidenced by substantial variations across breeding seasons and ocean basins in foraging effort and behaviour.
- Full Text:
- Date Issued: 2017
Carbon credit restoration projects in the Eastern Cape province of South Africa: considerations for sustainable local economic development
- Authors: Polak, James Samuel
- Date: 2017
- Language: English
- Type: Thesis , Masters , MCom
- Identifier: http://hdl.handle.net/10962/8069 , vital:21349
- Description: Although global climate change has been identified as a serious global economic, social, and environmental threat to society, national governments have been slow to respond on a global scale. Environmental economic theory offers market-based solutions to address climate change efficiently through carbon control regimes, such as carbon taxation and cap-and-trade policy. A major political milestone was reached when an international agreement entered into force in 2008, known the Kyoto Protocol, which incorporated a market-based solution to address climate change on a global scale. This allowed a global market for emissions to form through the Clean Development Mechanism. Although the Kyoto Protocol aimed to address a global issue on a global scale through a single global market for emissions, fragmented sovereign cap-and-trade schemes have since emerged in the form of national and regional emission markets, commonly referred to as carbon markets. The Clean Development Mechanism offered the opportunity to generate carbon credits through carbon offset projects, such as carbon restoration projects. Although the Kyoto Protocol did not achieve the objective of forming an internationally accepted global carbon control regime, it seems to have set a trend of including offset programs in newly emerging carbon control regimes, such as South Africa’s proposed carbon tax. This study set out to assess the extent to which carbon control regimes are enabling sustainable local economic development, based on carbon restoration projects in the Eastern Cape province of South Africa using Portulacaria afra, commonly known as spekboom. As a starting point, this study assessed the current state of the international carbon markets using significant international cap-and-trade based markets as examples. Based on Newell et al.’s (2013) selection of significant carbon markets and data availability, the United States’ Regional Greenhouse Gas Initiative and the European Union’s Emission Trading Scheme were selected. Historical, current and forecasted supply and demand data were gathered from Thomson Reuters’ Point Carbon research division. Further, historical futures and spot market price and volume data were gathered from the markets to compare how prices have fared over time. The Clean Development Mechanism’s market for Certified Emission Reduction credits was used for comparative purposes. The markets were found to be systemically oversupplied, leading to systemically low prices. The systemic oversupply in credits provides a limited incentive to initiate carbon offset projects, however, South Africa’s proposed carbon tax may be able to stimulate demand for domestic offset projects. Key success factors established through a comparative literature review on local economic development theory were incorporated into key informant interviews. The results were then analysed through the lens of Connelly’s (2007) model for sustainable development to provide recommendations for sustainable local economic development, regarding carbon restoration projects in the Eastern Cape using P. afra. The following opportunities were identified: the planting of P. afra on degraded land has the potential to mitigate climate change, offer water benefits to the surrounding communities, and promote biodiversity regeneration. There is potential for economic growth through job creation and the economic multiplier effect. Government funding is available and voluntary offset agreements do exist, eliminating a large portion of the cumbersome accreditation requirements. These projects also offer potential for social justice through the government funding requirements which stipulate that youth and women should be given preference for employment, potentially helping to alleviate inequality. The funding further stipulates that employees should be trained in transferable skills, offering potential for capacity building and social capital accumulation through education. These transferable skills include skills geared towards encouraging entrepreneurialism. Corresponding challenges were also found: excessive overgrazing through pastoralism has rendered some land degraded beyond restoration. Opportunists may resort to planting P. afra outside of the subtropical Albany Thicket biome to which it is endemic, leading to potential biodiversity loss rather than gains. Sufficient buy-in is required from private landowners for these projects to be sustainable, however, the projects entail a large opportunity cost to farmers as returns take at least 5 to 6 years. This may render these projects undesirable to most landowners and provides scope for free-riding, should pastoralists not have to bear the full costs of the project and property rights not be enforced through land user agreements. The projects require an exorbitant amount of upfront funding. Cash flow received from the projects does not extend in perpetuity. Requirements for social justice pertain only to government funded projects. A working model, generating and selling carbon credits through land restoration using P. afra, has not yet been established. As it stands, these carbon restoration projects are still highly speculative and carry a significant amount of investment risk, given the high mortality and low growth rates associated with the current planting method. The current systemic oversupply of carbon. credits in the international markets signal that returns from carbon credits are set to be low, at least until the oversupply issues are resolved. Should these challenges be overcome, carbon restoration projects using P. afra may have the potential to bolster sustainable local economic development in the impoverished regions of province as well as provide a locally-driven adaptation and mitigation strategy to address global climate change.
- Full Text:
- Date Issued: 2017
- Authors: Polak, James Samuel
- Date: 2017
- Language: English
- Type: Thesis , Masters , MCom
- Identifier: http://hdl.handle.net/10962/8069 , vital:21349
- Description: Although global climate change has been identified as a serious global economic, social, and environmental threat to society, national governments have been slow to respond on a global scale. Environmental economic theory offers market-based solutions to address climate change efficiently through carbon control regimes, such as carbon taxation and cap-and-trade policy. A major political milestone was reached when an international agreement entered into force in 2008, known the Kyoto Protocol, which incorporated a market-based solution to address climate change on a global scale. This allowed a global market for emissions to form through the Clean Development Mechanism. Although the Kyoto Protocol aimed to address a global issue on a global scale through a single global market for emissions, fragmented sovereign cap-and-trade schemes have since emerged in the form of national and regional emission markets, commonly referred to as carbon markets. The Clean Development Mechanism offered the opportunity to generate carbon credits through carbon offset projects, such as carbon restoration projects. Although the Kyoto Protocol did not achieve the objective of forming an internationally accepted global carbon control regime, it seems to have set a trend of including offset programs in newly emerging carbon control regimes, such as South Africa’s proposed carbon tax. This study set out to assess the extent to which carbon control regimes are enabling sustainable local economic development, based on carbon restoration projects in the Eastern Cape province of South Africa using Portulacaria afra, commonly known as spekboom. As a starting point, this study assessed the current state of the international carbon markets using significant international cap-and-trade based markets as examples. Based on Newell et al.’s (2013) selection of significant carbon markets and data availability, the United States’ Regional Greenhouse Gas Initiative and the European Union’s Emission Trading Scheme were selected. Historical, current and forecasted supply and demand data were gathered from Thomson Reuters’ Point Carbon research division. Further, historical futures and spot market price and volume data were gathered from the markets to compare how prices have fared over time. The Clean Development Mechanism’s market for Certified Emission Reduction credits was used for comparative purposes. The markets were found to be systemically oversupplied, leading to systemically low prices. The systemic oversupply in credits provides a limited incentive to initiate carbon offset projects, however, South Africa’s proposed carbon tax may be able to stimulate demand for domestic offset projects. Key success factors established through a comparative literature review on local economic development theory were incorporated into key informant interviews. The results were then analysed through the lens of Connelly’s (2007) model for sustainable development to provide recommendations for sustainable local economic development, regarding carbon restoration projects in the Eastern Cape using P. afra. The following opportunities were identified: the planting of P. afra on degraded land has the potential to mitigate climate change, offer water benefits to the surrounding communities, and promote biodiversity regeneration. There is potential for economic growth through job creation and the economic multiplier effect. Government funding is available and voluntary offset agreements do exist, eliminating a large portion of the cumbersome accreditation requirements. These projects also offer potential for social justice through the government funding requirements which stipulate that youth and women should be given preference for employment, potentially helping to alleviate inequality. The funding further stipulates that employees should be trained in transferable skills, offering potential for capacity building and social capital accumulation through education. These transferable skills include skills geared towards encouraging entrepreneurialism. Corresponding challenges were also found: excessive overgrazing through pastoralism has rendered some land degraded beyond restoration. Opportunists may resort to planting P. afra outside of the subtropical Albany Thicket biome to which it is endemic, leading to potential biodiversity loss rather than gains. Sufficient buy-in is required from private landowners for these projects to be sustainable, however, the projects entail a large opportunity cost to farmers as returns take at least 5 to 6 years. This may render these projects undesirable to most landowners and provides scope for free-riding, should pastoralists not have to bear the full costs of the project and property rights not be enforced through land user agreements. The projects require an exorbitant amount of upfront funding. Cash flow received from the projects does not extend in perpetuity. Requirements for social justice pertain only to government funded projects. A working model, generating and selling carbon credits through land restoration using P. afra, has not yet been established. As it stands, these carbon restoration projects are still highly speculative and carry a significant amount of investment risk, given the high mortality and low growth rates associated with the current planting method. The current systemic oversupply of carbon. credits in the international markets signal that returns from carbon credits are set to be low, at least until the oversupply issues are resolved. Should these challenges be overcome, carbon restoration projects using P. afra may have the potential to bolster sustainable local economic development in the impoverished regions of province as well as provide a locally-driven adaptation and mitigation strategy to address global climate change.
- Full Text:
- Date Issued: 2017
Cardiovascular disease risk in Black and Caucasian females: an Eastern Cape sample
- Authors: Remsing, Sandra Claudia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/40737 , vital:25021
- Description: The purpose of this study was to investigate cardiovascular disease risk in Black and Caucasian urban working females of the Makana region of the Eastern Cape. One- hundred and sixty six age-matched urban-working individuals (Black n = 88; Caucasian n = 78) voluntarily participated in this cross-sectional study. Cardiovascular disease risk was assessed in four categories: 1) obesity, classified as ‘morphological risk’, 2) blood pressure, classified as ‘cardiovascular risk’, 3) diet, physical activity, smoking, and alcohol consumption, classified as ‘lifestyle risk’, and 4) education and income, classified as ‘socioeconomic factors’. Results showed that Black females were significantly (p<0.01) heavier than Caucasian females and categorized as ‘obese’ according to BMI classifications (31.19 ± 8.09 kg.m2 and 25.90 ±4.67 kg.m2, respectively). Black females also presented with significantly (p<0.01) higher waist circumferences and waist-to-stature ratios, further confirming the obesity prevalence in this group. When accounting for those who were on anti-hypertensive mediation, Black females additionally presented with significantly (p<0.05) higher blood pressure, categorizing them as ‘pre-hypertensive’ (MAP = 98 ± 16 mmHg and 85 ± 11 mmHg, respectively). These results therefore placed Black females at increased cardiovascular disease risk compared to Caucasian females. With respect to lifestyle factors, Black females consumed significantly (p<0.05) more kilojoules carbohydrates, and total sugar than Caucasian females, and expended more physical activity MET- minutes per week (2688.86 ± 1486.56 MET-minutes and 1828.27 ± 2238.10 MET- minutes, respectively). However, reduced validity of physical activity data as well as poor dietary recall limited the interpretations of these findings. In addition, despite significant differences between smoking and alcohol consumption between groups, the majority of both Black and Caucasian females reported being non-smokers and consumed alcohol minimally. Thus, these were concluded to be unlikely contributors to cardiovascular disease risk in these samples. Socioeconomic results nevertheless expectedly showed that Black females were significantly (p<0.05) less educated, and subsequently earned lower incomes. It was thus concluded that this may be a likely contributor to higher cardiovascular risk in Black females. Future recommendations include the incorporation of exercise intensity measures as well as objective measures of habitual diet. This is in order to get a clearer understanding of the impact of these lifestyle factors on cardiovascular disease risk.
- Full Text:
- Date Issued: 2017
- Authors: Remsing, Sandra Claudia
- Date: 2017
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/40737 , vital:25021
- Description: The purpose of this study was to investigate cardiovascular disease risk in Black and Caucasian urban working females of the Makana region of the Eastern Cape. One- hundred and sixty six age-matched urban-working individuals (Black n = 88; Caucasian n = 78) voluntarily participated in this cross-sectional study. Cardiovascular disease risk was assessed in four categories: 1) obesity, classified as ‘morphological risk’, 2) blood pressure, classified as ‘cardiovascular risk’, 3) diet, physical activity, smoking, and alcohol consumption, classified as ‘lifestyle risk’, and 4) education and income, classified as ‘socioeconomic factors’. Results showed that Black females were significantly (p<0.01) heavier than Caucasian females and categorized as ‘obese’ according to BMI classifications (31.19 ± 8.09 kg.m2 and 25.90 ±4.67 kg.m2, respectively). Black females also presented with significantly (p<0.01) higher waist circumferences and waist-to-stature ratios, further confirming the obesity prevalence in this group. When accounting for those who were on anti-hypertensive mediation, Black females additionally presented with significantly (p<0.05) higher blood pressure, categorizing them as ‘pre-hypertensive’ (MAP = 98 ± 16 mmHg and 85 ± 11 mmHg, respectively). These results therefore placed Black females at increased cardiovascular disease risk compared to Caucasian females. With respect to lifestyle factors, Black females consumed significantly (p<0.05) more kilojoules carbohydrates, and total sugar than Caucasian females, and expended more physical activity MET- minutes per week (2688.86 ± 1486.56 MET-minutes and 1828.27 ± 2238.10 MET- minutes, respectively). However, reduced validity of physical activity data as well as poor dietary recall limited the interpretations of these findings. In addition, despite significant differences between smoking and alcohol consumption between groups, the majority of both Black and Caucasian females reported being non-smokers and consumed alcohol minimally. Thus, these were concluded to be unlikely contributors to cardiovascular disease risk in these samples. Socioeconomic results nevertheless expectedly showed that Black females were significantly (p<0.05) less educated, and subsequently earned lower incomes. It was thus concluded that this may be a likely contributor to higher cardiovascular risk in Black females. Future recommendations include the incorporation of exercise intensity measures as well as objective measures of habitual diet. This is in order to get a clearer understanding of the impact of these lifestyle factors on cardiovascular disease risk.
- Full Text:
- Date Issued: 2017
Cationic cyclodextrin/alginate chitosan nanoflowers as 5-fluorouracil drug delivery system
- Lakkakula, Jaya R, Matshaya, Thabo, Krause, Rui W M
- Authors: Lakkakula, Jaya R , Matshaya, Thabo , Krause, Rui W M
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125587 , vital:35798 , https://doi.org/10.1016/j.msec.2016.08.073
- Description: Cyclodextrins (CDs) have widely been used as component of drug delivery systems. However unmodified cyclodextrins are associated with cytotoxicity and poor water solubility thus limiting their use in pharmaceutical industry. The cationic-β-cyclodextrin (Cat-β-CD) polymer cores were synthesized using β-CD, epichlorohydrin and choline chloride via a one-step polycondensation process. The main aim of this study was to synthesize hierarchical nanoflowers composed of cationic-β-CD as polymeric core along with alginate and chitosan “petals” (Cat-β-CD/Alg-Chi nanoflowers) as carriers for oral delivery of 5-Fluorouracil (5-FU) via an ionic-gelation technique. The drug loading capacity, particle size, zeta potential and surface morphology of the synthesized nanoflowers were determined. The prepared nanoflowers were formed with an average size of 300 nm and a zeta potential of + 9.90 mV with good encapsulation efficiency of up to 77.3%. In vitro release of 5-FU from the loaded nanoflowers showed controlled and sustained release compared to the inclusion complex alone. Cat-β-CD/Alg-Chi nanoflowers were assessed against L929 cells and found to be effectively inhibiting the growth of L929 cells in a concentration dependent manner.
- Full Text:
- Date Issued: 2017
- Authors: Lakkakula, Jaya R , Matshaya, Thabo , Krause, Rui W M
- Date: 2017
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125587 , vital:35798 , https://doi.org/10.1016/j.msec.2016.08.073
- Description: Cyclodextrins (CDs) have widely been used as component of drug delivery systems. However unmodified cyclodextrins are associated with cytotoxicity and poor water solubility thus limiting their use in pharmaceutical industry. The cationic-β-cyclodextrin (Cat-β-CD) polymer cores were synthesized using β-CD, epichlorohydrin and choline chloride via a one-step polycondensation process. The main aim of this study was to synthesize hierarchical nanoflowers composed of cationic-β-CD as polymeric core along with alginate and chitosan “petals” (Cat-β-CD/Alg-Chi nanoflowers) as carriers for oral delivery of 5-Fluorouracil (5-FU) via an ionic-gelation technique. The drug loading capacity, particle size, zeta potential and surface morphology of the synthesized nanoflowers were determined. The prepared nanoflowers were formed with an average size of 300 nm and a zeta potential of + 9.90 mV with good encapsulation efficiency of up to 77.3%. In vitro release of 5-FU from the loaded nanoflowers showed controlled and sustained release compared to the inclusion complex alone. Cat-β-CD/Alg-Chi nanoflowers were assessed against L929 cells and found to be effectively inhibiting the growth of L929 cells in a concentration dependent manner.
- Full Text:
- Date Issued: 2017
Challenges in distribution of old age pensions in Lesotho
- Authors: Sejanamane, Nkhahle Daniel
- Date: 2017
- Subjects: Old age pensions -- Lesotho Aging -- Economic aspects -- Lesotho , Defined contribution pension plans -- Lesotho Retirement income -- Lesotho
- Language: English
- Type: Thesis , Masters , MPhil
- Identifier: http://hdl.handle.net/10948/20477 , vital:29293
- Description: The research set out to explore the nature of challenges in distribution of old age pensions in Lesotho. Poor institutional capacity failed the implementing agency, the Department of Pensions; to set up competent administrative structures to run run the pensions effectively and efficiently. A number of challenges have been identified, some of which were: inadequate supervision of the paying officers, fraud by workers and community agents, missing funds, insufficient resources, inadequate administrative capacity, overworked employees, faulty targeting, soft and discriminatory approach to non-compliance with rules and multiple use of identity documents by recipients. On the other hand, a number of opportunities have been identified to counteract the challenges. The main recommendation of the study was the engagement of mobile phone-based money transfer facilities to transfer the old age pensions from the government to the recipients. The Department of Pensions should make use of baseline database like information from civil registration agency like the Ministry of Home Affairs to confirm the validity of the pension recipients. Other recommendations included moving the division of old age pensions from the Pensions Department to the Ministry of Social Development which is the controlling body for other forms of social grants in Lesotho. The Ministry of Social Development is regarded as well equipped with qualified staff and facilities to deal with vulnerable people like the elderly.
- Full Text:
- Date Issued: 2017
- Authors: Sejanamane, Nkhahle Daniel
- Date: 2017
- Subjects: Old age pensions -- Lesotho Aging -- Economic aspects -- Lesotho , Defined contribution pension plans -- Lesotho Retirement income -- Lesotho
- Language: English
- Type: Thesis , Masters , MPhil
- Identifier: http://hdl.handle.net/10948/20477 , vital:29293
- Description: The research set out to explore the nature of challenges in distribution of old age pensions in Lesotho. Poor institutional capacity failed the implementing agency, the Department of Pensions; to set up competent administrative structures to run run the pensions effectively and efficiently. A number of challenges have been identified, some of which were: inadequate supervision of the paying officers, fraud by workers and community agents, missing funds, insufficient resources, inadequate administrative capacity, overworked employees, faulty targeting, soft and discriminatory approach to non-compliance with rules and multiple use of identity documents by recipients. On the other hand, a number of opportunities have been identified to counteract the challenges. The main recommendation of the study was the engagement of mobile phone-based money transfer facilities to transfer the old age pensions from the government to the recipients. The Department of Pensions should make use of baseline database like information from civil registration agency like the Ministry of Home Affairs to confirm the validity of the pension recipients. Other recommendations included moving the division of old age pensions from the Pensions Department to the Ministry of Social Development which is the controlling body for other forms of social grants in Lesotho. The Ministry of Social Development is regarded as well equipped with qualified staff and facilities to deal with vulnerable people like the elderly.
- Full Text:
- Date Issued: 2017
Changes in household food security, nutrition and food waste along an agro-ecological gradient and the rural-urban continuum in mid-sized South African towns
- Authors: Chakona, Gamuchirai
- Date: 2017
- Subjects: Food security -- South Africa , Women -- South Africa -- Nutritiona , Urban women -- South Africa -- Nutrition , Rural women -- South Africa -- Nutrition , Wild foods -- South Africa , Food supply -- South Africa , Malnutrition in children -- South Africa , Grants-in-aid -- South Africa , Household ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/6484 , vital:21127
- Description: The lack of dietary diversity is a severe problem experienced by most poor households globally. Most poor communities are at high risk of inadequate intake of micronutrients resulting from diets dominated by starchy staples. The present study considered the diets, dietary diversities and food security of women of reproductive age between 15-49 years, households and communities along the rural-urban continuum in three mid-sized towns situated along an agro-ecological gradient in South Africa. A 48-hour dietary recall was performed across two seasons (twice in summer and once in winter) and focus group discussions were held to gather all information including food abundance, seasons of food scarcity as well as coping strategies which households employ during periods of food shocks. Households were further asked to quantify any type of food waste that they could have generated in the previous 48 hours. Nutritional status of children under the age of five in all three towns was also measured using height-for-age (HAZ) and mid-upper arm circumference (MUAC) as indicators of stunting and wasting respectively. The household surveys were conducted with 554 women randomly selected in rural, peri-urban and urban locations of Richards Bay, Dundee and Harrismith. For nutritional status, the sample consisted of 216 children who were randomly selected from the sampled households in rural, peri-urban and urban locations of the study sites. Household Dietary Diversity Scores (HDDS) and Women’s Dietary Diversity Scores (WDDS) were calculated from the food items consumed by each household and each woman over a two-day period, respectively. Household food access was also measured for each household using Household Food Insecurity Access Scale (HFIAS). The mean WDDS and HDDS for the wettest site of Richards Bay (3.8±0.29 and 8.44±1.72, respectively) was significantly higher than at Dundee (3.4±0.30 and 7.76±1.63, respectively) and Harrismith (3.5±0.27 and 7.83±1.59, respectively) which were not different from one another. The mean HFIAS for Dundee (9.39±7.13) was significantly higher than that in Richards Bay (5.57±6.98) and Harrismith (6.43±6.59) which were not significantly different from one another. Dietary diversity scores were also significantly higher in urban locations than in peri-urban and rural ones whilst HFIAS was significantly lower in the urban locations than peri-urban and rural locations. There was lower dependence on food purchasing in Richards Bay compared to Dundee and Harrismith where the majority of the population was purchasing most of their food. The majority of Richards Bay households were involved in subsistence agriculture and also produced a surplus for sale, as well as collecting wild foods, which improved food security, unlike Dundee and Harrismith. Food insecurity was higher in rural and peri-urban areas compared to urban areas. In all towns, food was always available throughout the year but was beyond the reach of many households. In urban areas food was readily available and only limited by access, whereas rural populations have limited access to affordable food and face higher prices. The peri-urban populations were more food insecure because of high levels of poverty, unemployment and lack of access/entitlements to land. Periurban dwellers are therefore more sensitive to changes in incomes and food prices because they lack safety nets to absorb income or price shocks as they purchase more, rather than growing their own food. Household dietary diversity was significantly negatively correlated with household food access, that is households with low HDDS had higher HFIAS scores. Due to high levels of food insecurity, a greater percentage of children under the age of five years were stunted (35 %) and wasted (18 %). There were no significant differences in stunting along the agro-ecological gradient, along the rural-urban continuum and sex of child. However, significant differences were observed in child wasting along the agro-ecological gradient with Harrismith having more wasted children than the other two towns, which were not significantly different from each other. Significant differences were also observed between MUAC and sex of child where male children had higher MUAC than females. Wasting was significantly negatively associated with HDDS, with children from households with low HDDS tending to have large MUAC thus showing an inverse association among HDDS and obesity. However, further studies are needed to confirm this finding. In general food insecurity was closely associated with low wealth, food expenditure, large household size and limited access to land. The study did not find any significant role in the use of wild foods and social grants in improving food security for those households who were consuming wild foods and those receiving social grants. Although a greater percentage of households were food insecure, significant amounts of unprepared food (495±179 g per household) were wasted in Richards Bay alone in 48 hours mainly because the food had passed the best before date or had visibly gone bad. The amount of food waste was closely significantly negatively associated with household size. In general, the prevalence of food insecurity and wasting followed the agro-ecological gradient, with households in Richards Bay where the area.
- Full Text:
- Date Issued: 2017
- Authors: Chakona, Gamuchirai
- Date: 2017
- Subjects: Food security -- South Africa , Women -- South Africa -- Nutritiona , Urban women -- South Africa -- Nutrition , Rural women -- South Africa -- Nutrition , Wild foods -- South Africa , Food supply -- South Africa , Malnutrition in children -- South Africa , Grants-in-aid -- South Africa , Household ecology -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/6484 , vital:21127
- Description: The lack of dietary diversity is a severe problem experienced by most poor households globally. Most poor communities are at high risk of inadequate intake of micronutrients resulting from diets dominated by starchy staples. The present study considered the diets, dietary diversities and food security of women of reproductive age between 15-49 years, households and communities along the rural-urban continuum in three mid-sized towns situated along an agro-ecological gradient in South Africa. A 48-hour dietary recall was performed across two seasons (twice in summer and once in winter) and focus group discussions were held to gather all information including food abundance, seasons of food scarcity as well as coping strategies which households employ during periods of food shocks. Households were further asked to quantify any type of food waste that they could have generated in the previous 48 hours. Nutritional status of children under the age of five in all three towns was also measured using height-for-age (HAZ) and mid-upper arm circumference (MUAC) as indicators of stunting and wasting respectively. The household surveys were conducted with 554 women randomly selected in rural, peri-urban and urban locations of Richards Bay, Dundee and Harrismith. For nutritional status, the sample consisted of 216 children who were randomly selected from the sampled households in rural, peri-urban and urban locations of the study sites. Household Dietary Diversity Scores (HDDS) and Women’s Dietary Diversity Scores (WDDS) were calculated from the food items consumed by each household and each woman over a two-day period, respectively. Household food access was also measured for each household using Household Food Insecurity Access Scale (HFIAS). The mean WDDS and HDDS for the wettest site of Richards Bay (3.8±0.29 and 8.44±1.72, respectively) was significantly higher than at Dundee (3.4±0.30 and 7.76±1.63, respectively) and Harrismith (3.5±0.27 and 7.83±1.59, respectively) which were not different from one another. The mean HFIAS for Dundee (9.39±7.13) was significantly higher than that in Richards Bay (5.57±6.98) and Harrismith (6.43±6.59) which were not significantly different from one another. Dietary diversity scores were also significantly higher in urban locations than in peri-urban and rural ones whilst HFIAS was significantly lower in the urban locations than peri-urban and rural locations. There was lower dependence on food purchasing in Richards Bay compared to Dundee and Harrismith where the majority of the population was purchasing most of their food. The majority of Richards Bay households were involved in subsistence agriculture and also produced a surplus for sale, as well as collecting wild foods, which improved food security, unlike Dundee and Harrismith. Food insecurity was higher in rural and peri-urban areas compared to urban areas. In all towns, food was always available throughout the year but was beyond the reach of many households. In urban areas food was readily available and only limited by access, whereas rural populations have limited access to affordable food and face higher prices. The peri-urban populations were more food insecure because of high levels of poverty, unemployment and lack of access/entitlements to land. Periurban dwellers are therefore more sensitive to changes in incomes and food prices because they lack safety nets to absorb income or price shocks as they purchase more, rather than growing their own food. Household dietary diversity was significantly negatively correlated with household food access, that is households with low HDDS had higher HFIAS scores. Due to high levels of food insecurity, a greater percentage of children under the age of five years were stunted (35 %) and wasted (18 %). There were no significant differences in stunting along the agro-ecological gradient, along the rural-urban continuum and sex of child. However, significant differences were observed in child wasting along the agro-ecological gradient with Harrismith having more wasted children than the other two towns, which were not significantly different from each other. Significant differences were also observed between MUAC and sex of child where male children had higher MUAC than females. Wasting was significantly negatively associated with HDDS, with children from households with low HDDS tending to have large MUAC thus showing an inverse association among HDDS and obesity. However, further studies are needed to confirm this finding. In general food insecurity was closely associated with low wealth, food expenditure, large household size and limited access to land. The study did not find any significant role in the use of wild foods and social grants in improving food security for those households who were consuming wild foods and those receiving social grants. Although a greater percentage of households were food insecure, significant amounts of unprepared food (495±179 g per household) were wasted in Richards Bay alone in 48 hours mainly because the food had passed the best before date or had visibly gone bad. The amount of food waste was closely significantly negatively associated with household size. In general, the prevalence of food insecurity and wasting followed the agro-ecological gradient, with households in Richards Bay where the area.
- Full Text:
- Date Issued: 2017
Characterisation and cryopreservation of semen from indigenous Namaqua Afrikaner sheep breed, in comparison with Dorper and Dohne Merino breeds
- Authors: Letsoalo, Phutiane Thomas
- Date: 2017
- Subjects: Merino sheep Dorper sheep Semen
- Language: English
- Type: Thesis , Masters , Animal Science
- Identifier: http://hdl.handle.net/10353/11707 , vital:39099
- Description: The aim of this study was to characterise and cryopreserve semen of the indigenous Namaqua Afrikaner breed, and to compare it to that of Dorper and Dohne Merino sheep, whose semen is commercially frozen on a large scale. The study was conducted between January and August 2015. September 2013-born Namaqua Afrikaner (12), Dohne Merino (12) and Dorper (9) rams were used in the study. The rams were kept under kraal conditions with adequate shade, and they received a high protein, high energy diet. Originally it was envisaged to collect semen samples using the artificial vagina (AV) method, which proved to be problematic with the Namaqua Afrikaner rams. Semen samples were subsequently collected twice a week by either AV (Dohne Merino and Dorper) or electro-ejaculation (EE; all three breeds). Macroscopic sperm traits were assessed and sperm concentration determined immediately after collection. Each semen sample was diluted with Triladyl® (1:3) and subsequently frozen in liquid nitrogen vapour in straws. Frozen straws were thawed and evaluated at 7, 30 and 90 days after cryopreservation. A droplet (0.5 ml) from each thawed sample was assessed microscopically for post-thaw motility and percentage live sperm. Nigrosin-Eosin smears were prepared of fresh, diluted and frozen-thawed semen samples for determination of percentage live sperm. Data of all the traits were analysed with the GLM and CHI-SQUARE procedures of the SAS statistical package. Breed had a significant effect on ejaculate volume of fresh semen collected either via electro-ejaculation or artificial vagina. Dorper rams (1.37 ± 0.08 ml) and Dohne Merino rams (1.20 ± 0.08 ml) produced ejaculates with higher (P <0.05) semen volume than Namaqua Afrikaner rams (1.09 ± 0.08 ml) when using the EE. With the AV method, Dohne Merino rams (1.46 ± 0.08 ml) produced a higher (P <0.05) ejaculate volume than Dorper rams (1.22 ± 0.08 ml). Motility of the frozen-thawed semen samples was lower than that of the fresh and diluted samples for all breeds and collection methods. Furthermore, motility 3 hours after thawing was also lower than motility assessed immediately after thawing for all breeds and collection methods. Motility of frozen-thawed semen collected with an AV and evaluated at 7, 30 and 90 days after freezing was significantly higher than that collected via EE. Dorper rams had the lowest sperm concentration (1.10 ± 5.29x109 sperm/ml) and the Namaqua rams the highest sperm concentration (1.22 ± 5.20x109 sperm/ml) (P ˂0.05). The AV samples had a higher (P >0.05) sperm concentration (1.20 ± 3.68x109 sperm/ml) than the EE samples (1.11 ± 3.51x109 sperm/ml). The percentage live sperm in the fresh semen samples did not differ among Namaqua Afrikaner (67.76 ± 1.94percent), Dohne Merino (68.59 ± 1.94percent) and Dorper (72.82 ± 1.98percent) rams. The percentage live sperm for all three breeds dropped considerably after freezing to 17.76 ± 2.03percent, 17.86 ± 2.03percent and 22.72 ± 2.07percent respectively. It remained constant for all the breeds from 7 until 90 days after freezing, indicating that length of storage should not have an effect on percentage live sperm for semen collected via AV or EE. Percentage live sperm of the frozen-thawed semen of the Namaqua rams was lower than that of the Dorper rams, indicating that the Namaqua semen collected via EE did not freeze as well as that of the Dorper semen. In conclusion, neither fresh nor frozen-thawed Dorper and Dohne Merino semen collected via EE did differ significantly. Furthermore, except for semen volume, Dorper and Dohne Merino semen collected via AV did not differ significantly whether evaluated as fresh or frozen-thawed semen. However, both Dorper and Dohne Merino rams produced semen with higher motility and a higher percentage live sperm post-thaw when the semen samples were collected via an AV than via EE. From these results it can therefore be postulated that if Namaqua semen were collected via AV it could have a higher post-thaw percentage live sperm than if semen was collected via EE. Advanced further studies are necessary to investigate the reason for the lower post-thaw survival rate of sperm of the Namaqua Afrikaner rams. This is necessary as semen stored in a cryobank for breeding and conservation purposes for this endangered breed has to be of high quality. Such resources as cryobanks are expensive and funds cannot be wasted on preserving inferior samples that could not fertilize an ovum when needed. The low percentage of live sperm obtained with the frozen-thawed samples in this, as well as other studies on indigenous breeds, is an indication that further research is needed into more suitable freezing protocols. It can be concluded that Namaqua Afrikaner semen cannot be frozen successfully for the purpose of storage in a cryobank, when using a freezing protocol based on Triladyl® as extender. Furthermore, any increase in post-thaw survival rate of sperm will be beneficial and it is therefore suggested that all efforts be made to solve the problem of the Namaqua Afrikaner rams that do not want to ejaculate into an artificial vagina.
- Full Text:
- Date Issued: 2017
- Authors: Letsoalo, Phutiane Thomas
- Date: 2017
- Subjects: Merino sheep Dorper sheep Semen
- Language: English
- Type: Thesis , Masters , Animal Science
- Identifier: http://hdl.handle.net/10353/11707 , vital:39099
- Description: The aim of this study was to characterise and cryopreserve semen of the indigenous Namaqua Afrikaner breed, and to compare it to that of Dorper and Dohne Merino sheep, whose semen is commercially frozen on a large scale. The study was conducted between January and August 2015. September 2013-born Namaqua Afrikaner (12), Dohne Merino (12) and Dorper (9) rams were used in the study. The rams were kept under kraal conditions with adequate shade, and they received a high protein, high energy diet. Originally it was envisaged to collect semen samples using the artificial vagina (AV) method, which proved to be problematic with the Namaqua Afrikaner rams. Semen samples were subsequently collected twice a week by either AV (Dohne Merino and Dorper) or electro-ejaculation (EE; all three breeds). Macroscopic sperm traits were assessed and sperm concentration determined immediately after collection. Each semen sample was diluted with Triladyl® (1:3) and subsequently frozen in liquid nitrogen vapour in straws. Frozen straws were thawed and evaluated at 7, 30 and 90 days after cryopreservation. A droplet (0.5 ml) from each thawed sample was assessed microscopically for post-thaw motility and percentage live sperm. Nigrosin-Eosin smears were prepared of fresh, diluted and frozen-thawed semen samples for determination of percentage live sperm. Data of all the traits were analysed with the GLM and CHI-SQUARE procedures of the SAS statistical package. Breed had a significant effect on ejaculate volume of fresh semen collected either via electro-ejaculation or artificial vagina. Dorper rams (1.37 ± 0.08 ml) and Dohne Merino rams (1.20 ± 0.08 ml) produced ejaculates with higher (P <0.05) semen volume than Namaqua Afrikaner rams (1.09 ± 0.08 ml) when using the EE. With the AV method, Dohne Merino rams (1.46 ± 0.08 ml) produced a higher (P <0.05) ejaculate volume than Dorper rams (1.22 ± 0.08 ml). Motility of the frozen-thawed semen samples was lower than that of the fresh and diluted samples for all breeds and collection methods. Furthermore, motility 3 hours after thawing was also lower than motility assessed immediately after thawing for all breeds and collection methods. Motility of frozen-thawed semen collected with an AV and evaluated at 7, 30 and 90 days after freezing was significantly higher than that collected via EE. Dorper rams had the lowest sperm concentration (1.10 ± 5.29x109 sperm/ml) and the Namaqua rams the highest sperm concentration (1.22 ± 5.20x109 sperm/ml) (P ˂0.05). The AV samples had a higher (P >0.05) sperm concentration (1.20 ± 3.68x109 sperm/ml) than the EE samples (1.11 ± 3.51x109 sperm/ml). The percentage live sperm in the fresh semen samples did not differ among Namaqua Afrikaner (67.76 ± 1.94percent), Dohne Merino (68.59 ± 1.94percent) and Dorper (72.82 ± 1.98percent) rams. The percentage live sperm for all three breeds dropped considerably after freezing to 17.76 ± 2.03percent, 17.86 ± 2.03percent and 22.72 ± 2.07percent respectively. It remained constant for all the breeds from 7 until 90 days after freezing, indicating that length of storage should not have an effect on percentage live sperm for semen collected via AV or EE. Percentage live sperm of the frozen-thawed semen of the Namaqua rams was lower than that of the Dorper rams, indicating that the Namaqua semen collected via EE did not freeze as well as that of the Dorper semen. In conclusion, neither fresh nor frozen-thawed Dorper and Dohne Merino semen collected via EE did differ significantly. Furthermore, except for semen volume, Dorper and Dohne Merino semen collected via AV did not differ significantly whether evaluated as fresh or frozen-thawed semen. However, both Dorper and Dohne Merino rams produced semen with higher motility and a higher percentage live sperm post-thaw when the semen samples were collected via an AV than via EE. From these results it can therefore be postulated that if Namaqua semen were collected via AV it could have a higher post-thaw percentage live sperm than if semen was collected via EE. Advanced further studies are necessary to investigate the reason for the lower post-thaw survival rate of sperm of the Namaqua Afrikaner rams. This is necessary as semen stored in a cryobank for breeding and conservation purposes for this endangered breed has to be of high quality. Such resources as cryobanks are expensive and funds cannot be wasted on preserving inferior samples that could not fertilize an ovum when needed. The low percentage of live sperm obtained with the frozen-thawed samples in this, as well as other studies on indigenous breeds, is an indication that further research is needed into more suitable freezing protocols. It can be concluded that Namaqua Afrikaner semen cannot be frozen successfully for the purpose of storage in a cryobank, when using a freezing protocol based on Triladyl® as extender. Furthermore, any increase in post-thaw survival rate of sperm will be beneficial and it is therefore suggested that all efforts be made to solve the problem of the Namaqua Afrikaner rams that do not want to ejaculate into an artificial vagina.
- Full Text:
- Date Issued: 2017
Characterisation and cryopreservation of semen from indigenous Namaqua Afrikaner sheep breed, in comparison with Dorper and Dohne Merino breeds
- Authors: Letsoalo, Phutiane Thomas
- Date: 2017
- Subjects: Cryopreservation of organs, tissues, etc Merino sheep Dorper sheep
- Language: English
- Type: Thesis , Masters , Degree
- Identifier: http://hdl.handle.net/10353/4759 , vital:28510
- Description: The aim of this study was to characterise and cryopreserve semen of the indigenous Namaqua Afrikaner breed, and to compare it to that of Dorper and Dohne Merino sheep, whose semen is commercially frozen on a large scale. The study was conducted between January and August 2015. September 2013-born Namaqua Afrikaner (12), Dohne Merino (12) and Dorper (9) rams were used in the study. The rams were kept under kraal conditions with adequate shade, and they received a high protein, high energy diet. Originally it was envisaged to collect semen samples using the artificial vagina (AV) method, which proved to be problematic with the Namaqua Afrikaner rams. Semen samples were subsequently collected twice a week by either AV (Dohne Merino and Dorper) or electro-ejaculation (EE; all three breeds). Macroscopic sperm traits were assessed and sperm concentration determined immediately after collection. Each semen sample was diluted with Triladyl® (1:3) and subsequently frozen in liquid nitrogen vapour in straws. Frozen straws were thawed and evaluated at 7, 30 and 90 days after cryopreservation. A droplet (0.5 ml) from each thawed sample was assessed microscopically for post-thaw motility and percentage live sperm..
- Full Text:
- Date Issued: 2017
- Authors: Letsoalo, Phutiane Thomas
- Date: 2017
- Subjects: Cryopreservation of organs, tissues, etc Merino sheep Dorper sheep
- Language: English
- Type: Thesis , Masters , Degree
- Identifier: http://hdl.handle.net/10353/4759 , vital:28510
- Description: The aim of this study was to characterise and cryopreserve semen of the indigenous Namaqua Afrikaner breed, and to compare it to that of Dorper and Dohne Merino sheep, whose semen is commercially frozen on a large scale. The study was conducted between January and August 2015. September 2013-born Namaqua Afrikaner (12), Dohne Merino (12) and Dorper (9) rams were used in the study. The rams were kept under kraal conditions with adequate shade, and they received a high protein, high energy diet. Originally it was envisaged to collect semen samples using the artificial vagina (AV) method, which proved to be problematic with the Namaqua Afrikaner rams. Semen samples were subsequently collected twice a week by either AV (Dohne Merino and Dorper) or electro-ejaculation (EE; all three breeds). Macroscopic sperm traits were assessed and sperm concentration determined immediately after collection. Each semen sample was diluted with Triladyl® (1:3) and subsequently frozen in liquid nitrogen vapour in straws. Frozen straws were thawed and evaluated at 7, 30 and 90 days after cryopreservation. A droplet (0.5 ml) from each thawed sample was assessed microscopically for post-thaw motility and percentage live sperm..
- Full Text:
- Date Issued: 2017
Characterisation of antibacterial compounds produced by Pseudomonas spp. isolated from Hogsback wetlands, Eastern Cape, South Africa
- Authors: Obi, Akudo Odochi
- Date: 2017
- Subjects: Bacteriology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/15688 , vital:40507
- Description: With microbial pathogens developing resistance against currently existing antimicrobials, there is an earnest need to discover and develop new therapeutic compounds with unique and/or precise modes of action. Natural products have provided the inspiration for most of the active ingredients in medicines and thus are regarded as a potential screening resource lead for discovery of new drugs. Pseudomonads are ubiquitous, Gram-negative, motile bacteria that flourish and inhabit a diversity of environments. Literature has vastly revealed that some members of the genus Pseudomonas are capable of producing a plethora of biologically active metabolites and thus are regarded as “attractive” bacteria for testing as potential sources for new therapeutic compounds. In this regard, this study was undertaken with an aim to isolate and characterize antibacterial compounds produced by Pseudomonas species isolated from aquatic milieu of the Hogsback wetlands, Eastern Cape, South Africa. A total of 12 water samples were aseptically collected from Hogsback wetlands. To ascertain antimicrobial potential of the isolates, 9 test bacterial (sensitive) strains, namely Escherichia coli ATCC 3695, Vibrio fluvialis, Salmonella typhimurium, Salmonella enteritidis, Pseudomonas aeruginosa ATCC 27853, Escherichia coli (2), Listeria ivanovii, Listeria monocytogenes and Enterococcus faecalis ATCC 19433 were used for antimicrobial screening. A total of 500 presumptive Pseudomonas spp. were isolated and screened for the production of antibacterial compound through the Agar-well diffusion method. About 8percent of the presumptive Pseudomonas spp. produced compound with activity against the test bacteria and based on the levels of activity shown, three isolates coded as A53, Y55 and Y138 were selected and identified by 16S rDNA sequence analysis and The Basic Local Alignment Search Tool analysis revealed that the three isolates (A53, Y55 and Y138) belonged to the Pseudomonas genus. Using MEGA6 software, a molecular phylogenetic tree was constructed by Maximum Likelihood Method. The phylogenetic analysis by this method showed that all three isolate codes (A53, Y55 and Y138) formed the same clade with Pseudomonas viridiflava strain P3 (Accession number: AY972186) and Pseudomonas plecoglossicida strain P9 (Accession number: AY972231) at a high bootstrap value of 100percent. Isolate code A53 and Y55 also grouped together at a bootstrap value of 96percent. Factors affecting antibacterial compound production by the three isolates were elucidated. The effect of pH on the three isolates revealed that isolate code A53 and Y55 could produce antibacterial compounds over all pH ranges (pH 4-9), however, antibacterial production was produced optimally at acidic conditions (pH 4) and a less acidic-neutral condition (pH 6) respectively. Isolate Y138 showed optimal production at pH 5. The effect of temperature on all three isolates was studied at different temperatures ranging between 25°C-40°C. Study on effect of temperature variations on antibacterial production revealed that all three isolates are capable of growing and producing antibacterial compounds over all the different temperature ranges, however, maximum/optimum production was observed at temperature of 30°C. In order to establish the role of plasmids in antibacterial production, two curing agents; Sodium dodecyl sulfate (SDS) and Ethidium bromide under different sub-lethal concentrations (1 mg/ml -11mg/ml and 2.5 μg/ml- 125 μg/ml respectively) were used to cure the selected isolates. Plasmid DNA samples of A53, Y55 and Y138, were separated by electrophoresis on a 0.7percent (w/v) agarose. Agarose gel electrophoresis revealed that not all the concentrations used were effective in curing the plasmid. A Quick Load 1 kb Extend DNA ladder marker was used for determining the size of the plasmids. Isolate code A53 and Y138 had a plasmid size of 48.5 kb while isolate Y55 had a plasmid size of approximately 20 kb. Antibacterial activity by agar-well diffusion method after the curing process revealed that antibacterial production was not lost or prevented, but rather increased. Thus, it is suggested that the genes responsible for antibiotic production in this study were chromosomal-encoded and not plasmid-encoded. This study revealed that Hogsback wetlands may represent a previously unexplored environment/source of discovering novel and potent antibacterial compounds.
- Full Text:
- Date Issued: 2017
- Authors: Obi, Akudo Odochi
- Date: 2017
- Subjects: Bacteriology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/15688 , vital:40507
- Description: With microbial pathogens developing resistance against currently existing antimicrobials, there is an earnest need to discover and develop new therapeutic compounds with unique and/or precise modes of action. Natural products have provided the inspiration for most of the active ingredients in medicines and thus are regarded as a potential screening resource lead for discovery of new drugs. Pseudomonads are ubiquitous, Gram-negative, motile bacteria that flourish and inhabit a diversity of environments. Literature has vastly revealed that some members of the genus Pseudomonas are capable of producing a plethora of biologically active metabolites and thus are regarded as “attractive” bacteria for testing as potential sources for new therapeutic compounds. In this regard, this study was undertaken with an aim to isolate and characterize antibacterial compounds produced by Pseudomonas species isolated from aquatic milieu of the Hogsback wetlands, Eastern Cape, South Africa. A total of 12 water samples were aseptically collected from Hogsback wetlands. To ascertain antimicrobial potential of the isolates, 9 test bacterial (sensitive) strains, namely Escherichia coli ATCC 3695, Vibrio fluvialis, Salmonella typhimurium, Salmonella enteritidis, Pseudomonas aeruginosa ATCC 27853, Escherichia coli (2), Listeria ivanovii, Listeria monocytogenes and Enterococcus faecalis ATCC 19433 were used for antimicrobial screening. A total of 500 presumptive Pseudomonas spp. were isolated and screened for the production of antibacterial compound through the Agar-well diffusion method. About 8percent of the presumptive Pseudomonas spp. produced compound with activity against the test bacteria and based on the levels of activity shown, three isolates coded as A53, Y55 and Y138 were selected and identified by 16S rDNA sequence analysis and The Basic Local Alignment Search Tool analysis revealed that the three isolates (A53, Y55 and Y138) belonged to the Pseudomonas genus. Using MEGA6 software, a molecular phylogenetic tree was constructed by Maximum Likelihood Method. The phylogenetic analysis by this method showed that all three isolate codes (A53, Y55 and Y138) formed the same clade with Pseudomonas viridiflava strain P3 (Accession number: AY972186) and Pseudomonas plecoglossicida strain P9 (Accession number: AY972231) at a high bootstrap value of 100percent. Isolate code A53 and Y55 also grouped together at a bootstrap value of 96percent. Factors affecting antibacterial compound production by the three isolates were elucidated. The effect of pH on the three isolates revealed that isolate code A53 and Y55 could produce antibacterial compounds over all pH ranges (pH 4-9), however, antibacterial production was produced optimally at acidic conditions (pH 4) and a less acidic-neutral condition (pH 6) respectively. Isolate Y138 showed optimal production at pH 5. The effect of temperature on all three isolates was studied at different temperatures ranging between 25°C-40°C. Study on effect of temperature variations on antibacterial production revealed that all three isolates are capable of growing and producing antibacterial compounds over all the different temperature ranges, however, maximum/optimum production was observed at temperature of 30°C. In order to establish the role of plasmids in antibacterial production, two curing agents; Sodium dodecyl sulfate (SDS) and Ethidium bromide under different sub-lethal concentrations (1 mg/ml -11mg/ml and 2.5 μg/ml- 125 μg/ml respectively) were used to cure the selected isolates. Plasmid DNA samples of A53, Y55 and Y138, were separated by electrophoresis on a 0.7percent (w/v) agarose. Agarose gel electrophoresis revealed that not all the concentrations used were effective in curing the plasmid. A Quick Load 1 kb Extend DNA ladder marker was used for determining the size of the plasmids. Isolate code A53 and Y138 had a plasmid size of 48.5 kb while isolate Y55 had a plasmid size of approximately 20 kb. Antibacterial activity by agar-well diffusion method after the curing process revealed that antibacterial production was not lost or prevented, but rather increased. Thus, it is suggested that the genes responsible for antibiotic production in this study were chromosomal-encoded and not plasmid-encoded. This study revealed that Hogsback wetlands may represent a previously unexplored environment/source of discovering novel and potent antibacterial compounds.
- Full Text:
- Date Issued: 2017
Characterisation of human pathogenic vibrios and methicillin-resistant staphylococcus aureus (MRSA) from wild and tank cultured dusky kob (agyrosomus japonicus) in the Eastern Cape Province, South Africa
- Authors: Justine, Fri
- Date: 2017
- Subjects: Marine microbiology Marine microbiology--South Africa--Eastern Cape Staphylococcus aureus infections--South Africa--Eastern Cape
- Language: English
- Type: Thesis , Doctoral , Microbiology
- Identifier: http://hdl.handle.net/10353/16047 , vital:40607
- Description: Introduction: Marine finfish including dusky kob (Agyrosomus japonicus), in addition to its high protein value, is bestowed with numerous health benefits including being heart friendly due to high proportion of omega 3 fatty acids. They are therefore used as powerful preventive measures against cardiovaslcular diseases. They are also important in neurological development during gestation and infancy, thus a regular recommendation by nutritionists. However, fish and its environment may be contaminated by bacteria pathogens. Human infections caused by members of the genus Vibrio, and Staphylococcus especially Methicillin-resistant S. aureus (MRSA) are of increased concern worldwide especially with increased Vibrio disease outbreaks and rapid spread of MRSA in the community. Methicillin-resistant Staphylococcus aureus is regarded as an emerging zoonotic agent, therefore marine fish may be considered as a reservoir for infection. The emergence of multi-drug resistant organisms in both farm animals and humans has also been a challenge that hurdles chemotherapy worldwide. Methods: We enumerated the bacteria flora of skin, gill and gut of marine dusky kob (Agyrosomus japonicus) raised in a recirculatory aquaculture system using metagenomic sequencing of the 16S rRNA. We further screened 120 dusky kob fishes (skin, gill and gut) and 80 water samples from two fish farms and Kariega estuary collected over a 10 month period for human pathogenic vibrios, and MRSA using standard procedures. Vibrio species were further subjected to species specific PCRs delineating them into V. cholerae, V. parahaemolyticus, V. vulnificus, and V. fluvialis. This was followed by elucidation of the genotypic virulence determinants. The Reverse Fragment Length Polymorphism (RFLP) of the cytotoxin hemolysin (vvhA) gene of V. vulnificus strains was carried out to determine the associated biotypes. A total of 277 Vibrio strains consisting of 126 V. fluvialis, 45 Vibrio vulnificus, 30 V. parahaemolyticus and 76 vibrios belonging to other species were subjected to susceptibility testing to 15 antibiotics by the disc diffusion method and resistant strains were further evaluated for their genotypic antimicrobial resistant determinants by polymerase chain reaction followed by plasmid profiling. For MRSA screening, we evaluated the reliability of cefoxitin disc diffusion, oxacillin screen agar and BrillianceTM MRSA 2 agar tests, in detecting methicillin resistance from fish (environmental) samples using PCR detection of the mecA as the gold standard. A total of 33 mecA positive S. aureus strains (MRSA) were subjected to PCR detection of enterotoxins (Staphylococcal enterotoxin A-E) and Panton Valentine Leucocidin (PVL) encoding genes. The SCCmec types were also investigated by multiplex PCR targeting genes encoding type I-V. The antibiogram profiles of MRSA strains to 12 antibiotics by the disc diffusion method and to vancomycin by broth micro dilution method were elucidated. Polymerase chain reaction was employed to evaluate the presence of antibiotic resistant genes. The nucleotide sequences of the rpoB gene were analysed to determine mutations that could lead to rifampicin resistance. Results: A broad diversity of pathogenic and non-pathogenic bacterial species of different taxonomic groups was observed with Proteobacteria revealed as the most common bacteria phyla. Fifty one families were identified with Enterobacteriaceae the most frequently detected in all the anatomical sites and the gut showing the highest species diversity. A total of 606 (60.23 percent ) presumptive Vibrio isolates were confirmed by PCR of which V. fluvialis was the most predominant, 193 (31.85 percent ). This was followed by Vibrio vulnificus 74 (12.21 percent ), and V. parahaemolyticus 33 (5.45 percent ). No V. cholerae strain was detected. Only one of the V. parahaemolyticus strains possessed the trh virulent gene with no tdh detected. Virulence factors of V. fluvialis detected were stn (13.5 percent ), hupO (10.4 percent ), and vfpA (1.0 percent ). V. vulnificus biotype 3, formerly restricted to Isreal was identified. Generally, resistance among Vibrio isolates varied considerably with highest resistances recorded to amoxicillin (76.2 percent ), ampicillin (67.5 percent ), erythromycin (38.3 percent ), and doxycycline (35.0 percent ) while higher susceptibilities were revealed by gentamicin (100 percent ), norfloxacin (97.8 percent ), florfenicol (90.3 percent ), tetracycline (87.7 percent ), and chloramphenicol (87.4 percent ). Multiple antibiotic resistance (MAR) (resistance to ≥ 2 classes of antibiotics) was 58.5 percent . The MAR index did not vary significantly between sites (P>0.05) and values of >0.20 were recorded in 40 percent (108/277) of all the isolates. The resistant genes ampC, blaOXA, tetA, tetM, dfr1, sul1, sul2, ermB, nptII and strA were detected in two or more Vibrio isolates while the SXT intergrase was detected only in one isolate. Seven of the 18 extreme drug resistant isolates possessed 1–3 plasmids of 1.5–10 kb range. A total of 321 presumptive Staphylococcus aureus isolates were recovered by culture out of which 202 (62.9 percent ) were identified as S. aureus by PCR. Of these, 33 (16.3 percent ) strains were mecA positive while the rest, 169 (83.7 percent ) were mecA negative. The sensitivity and specificity of MRSA detection by use of cefoxitin disc (30 μg) test was 93.9 percent and 91.7 percent , that for oxacillin screen agar test (6 μg/mL) was 81.8 percent and 92.3 percent while that of BrillianceTM MRSATM 2 agar was 87.9 percent and 94.1 percent respectively. Staphylococcal enterotoxin SEE was detected in 12.1 percent (4/33) of total strains followed by SEA 3.0 percent (1/33), and SEC 3.0 percent (1/33). SEB and SED were absent. Six of the isolates had the PVL gene, giving a prevalence of 18.2 percent . The most frequently detected SCCmec type was SCCmec type III (17/33; 51.5 percent ), closely followed by SCCmec subtype IVc (10/33; 30.3 percent ) and the least were SCCmec types I and II with only 3.0 percent (1/33) each. The rest four (4/33; 12.1 percent ) did not belong to any of the above types and were therefore considered to belong to other subtypes of SCCmec type IV not tested in the study. For antibiogram patterns, 12 (36.4 percent ) strains were resistant to doxycyline, 10 (30.3 percent ) to trimethroprim-sulfamethoxazole, 9 (27.3 percent ) to tetracycline and only 1 (3.0 percent ) strain was resistant to ciprofloxacin. Nineteen (57.6 percent ) of the MRSA strains had vancomycin MIC of ≤ 2 μg/mL, 4 (12.1 percent ) with MIC range of 4-8 μg/mL, and 10 (30.3 percent ) with values ≥ 16 μg/mL. Overall, 27 (91.percent) isolates showed simultaneous resistance to 3 or more antibiotics. The resistant genes tetM, tetA, ermB, BlaZ femA were detected in two or more strains resistant to various antimicrobials. Resistance to rifampicin was not caused by mutations in the rpoB gene. Conclusions: To the best of our knowledge, this study is the first study reporting a broad, and diverse bacteria flora of skin, gill, and gut of the South African dusky kob as well as the first study on human pathogenic vibrios, and MRSA from marine finfish especially those from recirculatory aquaculture systems. Also, our study revealed that Vibrio species with pathogenic potential are present in marine dusky kob and its environs. Dusky kob is contaminated with CA- MRSA and HA- MRSA that may cause difficult to treat infections with regular antibiotics. Some of the MRSA strains contained toxins that can cause food-borne gastroeneteritis. The present study revealed that MRSA and Vibrio species are potential reservoirs for antibiotic resistant genes, which could be disseminated to other bacterial species probably through plasmids, a public health risk.
- Full Text:
- Date Issued: 2017
- Authors: Justine, Fri
- Date: 2017
- Subjects: Marine microbiology Marine microbiology--South Africa--Eastern Cape Staphylococcus aureus infections--South Africa--Eastern Cape
- Language: English
- Type: Thesis , Doctoral , Microbiology
- Identifier: http://hdl.handle.net/10353/16047 , vital:40607
- Description: Introduction: Marine finfish including dusky kob (Agyrosomus japonicus), in addition to its high protein value, is bestowed with numerous health benefits including being heart friendly due to high proportion of omega 3 fatty acids. They are therefore used as powerful preventive measures against cardiovaslcular diseases. They are also important in neurological development during gestation and infancy, thus a regular recommendation by nutritionists. However, fish and its environment may be contaminated by bacteria pathogens. Human infections caused by members of the genus Vibrio, and Staphylococcus especially Methicillin-resistant S. aureus (MRSA) are of increased concern worldwide especially with increased Vibrio disease outbreaks and rapid spread of MRSA in the community. Methicillin-resistant Staphylococcus aureus is regarded as an emerging zoonotic agent, therefore marine fish may be considered as a reservoir for infection. The emergence of multi-drug resistant organisms in both farm animals and humans has also been a challenge that hurdles chemotherapy worldwide. Methods: We enumerated the bacteria flora of skin, gill and gut of marine dusky kob (Agyrosomus japonicus) raised in a recirculatory aquaculture system using metagenomic sequencing of the 16S rRNA. We further screened 120 dusky kob fishes (skin, gill and gut) and 80 water samples from two fish farms and Kariega estuary collected over a 10 month period for human pathogenic vibrios, and MRSA using standard procedures. Vibrio species were further subjected to species specific PCRs delineating them into V. cholerae, V. parahaemolyticus, V. vulnificus, and V. fluvialis. This was followed by elucidation of the genotypic virulence determinants. The Reverse Fragment Length Polymorphism (RFLP) of the cytotoxin hemolysin (vvhA) gene of V. vulnificus strains was carried out to determine the associated biotypes. A total of 277 Vibrio strains consisting of 126 V. fluvialis, 45 Vibrio vulnificus, 30 V. parahaemolyticus and 76 vibrios belonging to other species were subjected to susceptibility testing to 15 antibiotics by the disc diffusion method and resistant strains were further evaluated for their genotypic antimicrobial resistant determinants by polymerase chain reaction followed by plasmid profiling. For MRSA screening, we evaluated the reliability of cefoxitin disc diffusion, oxacillin screen agar and BrillianceTM MRSA 2 agar tests, in detecting methicillin resistance from fish (environmental) samples using PCR detection of the mecA as the gold standard. A total of 33 mecA positive S. aureus strains (MRSA) were subjected to PCR detection of enterotoxins (Staphylococcal enterotoxin A-E) and Panton Valentine Leucocidin (PVL) encoding genes. The SCCmec types were also investigated by multiplex PCR targeting genes encoding type I-V. The antibiogram profiles of MRSA strains to 12 antibiotics by the disc diffusion method and to vancomycin by broth micro dilution method were elucidated. Polymerase chain reaction was employed to evaluate the presence of antibiotic resistant genes. The nucleotide sequences of the rpoB gene were analysed to determine mutations that could lead to rifampicin resistance. Results: A broad diversity of pathogenic and non-pathogenic bacterial species of different taxonomic groups was observed with Proteobacteria revealed as the most common bacteria phyla. Fifty one families were identified with Enterobacteriaceae the most frequently detected in all the anatomical sites and the gut showing the highest species diversity. A total of 606 (60.23 percent ) presumptive Vibrio isolates were confirmed by PCR of which V. fluvialis was the most predominant, 193 (31.85 percent ). This was followed by Vibrio vulnificus 74 (12.21 percent ), and V. parahaemolyticus 33 (5.45 percent ). No V. cholerae strain was detected. Only one of the V. parahaemolyticus strains possessed the trh virulent gene with no tdh detected. Virulence factors of V. fluvialis detected were stn (13.5 percent ), hupO (10.4 percent ), and vfpA (1.0 percent ). V. vulnificus biotype 3, formerly restricted to Isreal was identified. Generally, resistance among Vibrio isolates varied considerably with highest resistances recorded to amoxicillin (76.2 percent ), ampicillin (67.5 percent ), erythromycin (38.3 percent ), and doxycycline (35.0 percent ) while higher susceptibilities were revealed by gentamicin (100 percent ), norfloxacin (97.8 percent ), florfenicol (90.3 percent ), tetracycline (87.7 percent ), and chloramphenicol (87.4 percent ). Multiple antibiotic resistance (MAR) (resistance to ≥ 2 classes of antibiotics) was 58.5 percent . The MAR index did not vary significantly between sites (P>0.05) and values of >0.20 were recorded in 40 percent (108/277) of all the isolates. The resistant genes ampC, blaOXA, tetA, tetM, dfr1, sul1, sul2, ermB, nptII and strA were detected in two or more Vibrio isolates while the SXT intergrase was detected only in one isolate. Seven of the 18 extreme drug resistant isolates possessed 1–3 plasmids of 1.5–10 kb range. A total of 321 presumptive Staphylococcus aureus isolates were recovered by culture out of which 202 (62.9 percent ) were identified as S. aureus by PCR. Of these, 33 (16.3 percent ) strains were mecA positive while the rest, 169 (83.7 percent ) were mecA negative. The sensitivity and specificity of MRSA detection by use of cefoxitin disc (30 μg) test was 93.9 percent and 91.7 percent , that for oxacillin screen agar test (6 μg/mL) was 81.8 percent and 92.3 percent while that of BrillianceTM MRSATM 2 agar was 87.9 percent and 94.1 percent respectively. Staphylococcal enterotoxin SEE was detected in 12.1 percent (4/33) of total strains followed by SEA 3.0 percent (1/33), and SEC 3.0 percent (1/33). SEB and SED were absent. Six of the isolates had the PVL gene, giving a prevalence of 18.2 percent . The most frequently detected SCCmec type was SCCmec type III (17/33; 51.5 percent ), closely followed by SCCmec subtype IVc (10/33; 30.3 percent ) and the least were SCCmec types I and II with only 3.0 percent (1/33) each. The rest four (4/33; 12.1 percent ) did not belong to any of the above types and were therefore considered to belong to other subtypes of SCCmec type IV not tested in the study. For antibiogram patterns, 12 (36.4 percent ) strains were resistant to doxycyline, 10 (30.3 percent ) to trimethroprim-sulfamethoxazole, 9 (27.3 percent ) to tetracycline and only 1 (3.0 percent ) strain was resistant to ciprofloxacin. Nineteen (57.6 percent ) of the MRSA strains had vancomycin MIC of ≤ 2 μg/mL, 4 (12.1 percent ) with MIC range of 4-8 μg/mL, and 10 (30.3 percent ) with values ≥ 16 μg/mL. Overall, 27 (91.percent) isolates showed simultaneous resistance to 3 or more antibiotics. The resistant genes tetM, tetA, ermB, BlaZ femA were detected in two or more strains resistant to various antimicrobials. Resistance to rifampicin was not caused by mutations in the rpoB gene. Conclusions: To the best of our knowledge, this study is the first study reporting a broad, and diverse bacteria flora of skin, gill, and gut of the South African dusky kob as well as the first study on human pathogenic vibrios, and MRSA from marine finfish especially those from recirculatory aquaculture systems. Also, our study revealed that Vibrio species with pathogenic potential are present in marine dusky kob and its environs. Dusky kob is contaminated with CA- MRSA and HA- MRSA that may cause difficult to treat infections with regular antibiotics. Some of the MRSA strains contained toxins that can cause food-borne gastroeneteritis. The present study revealed that MRSA and Vibrio species are potential reservoirs for antibiotic resistant genes, which could be disseminated to other bacterial species probably through plasmids, a public health risk.
- Full Text:
- Date Issued: 2017
Characterisation of photovoltaic devices using large area light beam induced current measurements
- Okullo, Michael, Van Dyk, Ernes, Okullo, W
- Authors: Okullo, Michael , Van Dyk, Ernes , Okullo, W
- Date: 2017
- Subjects: Photovoltaic cells Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/20526 , vital:29314
- Description: Photovoltaic (PV) modules are made by connecting PV cells in series in order to generate a reasonable voltage that can be used for any productive work. Inaccuracy in cell sorting during crystalline silicon module construction, or non-uniform deposition of PV material and laser scribing during thin _lm module construction, may introduce current mismatch in the module. Current mismatch is a consequence of connecting module cells which have non-identical electrical characteristics. When current mismatch occurs in a module, it is the cell generating the lowest current that determines the module output current and this leads to a decrease in the output power and lifespan of the module. Investigation of current uniformity and the different current reducing features in PV modules, which are potential sources of current mismatch, is therefore critical in optimising the performance of PV modules. In this study, a large area light beam induced current (LA-LBIC) measurement system was developed. This non-destructive technique was used to characterise crystalline silicon PV modules (mono-crystalline and multi-crystalline), thin _lm PV modules (amorphous silicon and copper indium diselenide) and a combined concentrator photovoltaic (CPV) module. A light source mounted onto a motorised x-y scanning stage was used to illuminate a PV module, or the Fresnel lens of a CPV module, point-by-point, while measuring the module output current. The measured current was mapped as a function of position and presented as an LBIC image. The point-illuminated circuit model of a PV module was designed and used to explain the variation in current between and within module cells in the LA-LBIC maps. Application of the model to crystalline silicon modules attributes the variation in photo-generated current between cells mainly to current mismatch between series connected cells. Current variation within cells is attributed to individual cell shunts. In the thin _lm modules, the model attributes the variation in photo-generated current mainly to differences in local cell shunts and series resistances originating from the scribing procedure during cell formation in the manufacturing process. In the PV modules studied, variation in photo-generated current was found to exist both between and within cells. The variation was more pronounced between cells than within cells. Module point I-V curves at different points of the module were measured in order to extract short circuit current, to quantify the variations between and within cells. A striation ring defect, causing a drop in short circuit current of 38%, was detected in the mono-crystalline module. Investigation of the striation ring defect indicated that the defect is active in the bulk (p-type) but inactive in the top (n-type) layer. Further characterisation of the defect revealed that a higher percentage loss in short circuit current occurs at lower light intensities. In the multi-crystalline silicon module, cracks were detected and found to electrically isolate the module cells into two parts, causing them to operate in parallel and consequently introducing current mismatch in the module. The I-V curve of the module at standard test condition (STC) revealed a step below the knee, which is a manifestation of current mismatch in the module. High currents, as a consequence of diffuse reflection, leading to multiple reflections by the top glass were also observed at localised points on the bus bar and cell separations. In the a-Si module, the variation in photo-current within some cells, was found to be substantial. In the copper indium diselenide (CIS) module, an electrical disconnection across the module cells was identified. A disconnection in the form of a triangular shape was also identified in this module, which completely disconnected the front contact of this area from the module. This unique disconnection feature caused current in the module to follow in a reverse direction when the light spot was incident within the boundary of the disconnection. Scans performed under different forward voltage biases were useful in identifying severely shunted module cells. A severely shunted cell was found to generate a higher photo-current than a good cell at the same forward bias voltage. This unique observation was explored further using point-illuminated module I-V measurements, and was found to be due to the crossing over of the I-V curves of the two cells. In order to explore the relationship between cell photo-current and cell shunt resistance, a method to determine the shunt resistances of the cells in an encapsulated module was devised. The method involves measuring the I-V curves of a fully illuminated module and a partially illuminated module when one of its cells is shaded and the I-V curves used to determine the short circuit current and the shunt resistance of the shaded cell. A strong correlation was found to exist between the short circuit current of the shaded cell and the cell shunt resistance, as well as between the short circuit current of the shaded cell and dark LBIC. The LA-LBIC technique was further applied to characterise a combine CPV module. Results showed that the Fresnel lens facets close to the centre generate a higher photo-current at the receiver than those towards the edges. The reduced photo-current towards the edges was attributed to losses due to di_raction, dielectric reflection and internal re_ection. About 65% of the area of the Fresnel lenses were found to be e_ective in light collection in terms of the photo-current generated at the receiver. Abrasions and scratches on the Fresnel lenses were identi_ed as some of the current limiting features in a CPV module. The LA-LBIC technique used in this study has demonstrated the potential to investigate current mismatch, current limiting and current enhancing features in PV modules. The capacity to further characterise current limiting features in order to investigate their effects on photo-current under different wavelengths and light intensities was also demonstrated. Extending the LA-LBIC technique to characterise a combined CPV module is a great achievement of this work.
- Full Text:
- Date Issued: 2017
- Authors: Okullo, Michael , Van Dyk, Ernes , Okullo, W
- Date: 2017
- Subjects: Photovoltaic cells Photovoltaic power generation
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10948/20526 , vital:29314
- Description: Photovoltaic (PV) modules are made by connecting PV cells in series in order to generate a reasonable voltage that can be used for any productive work. Inaccuracy in cell sorting during crystalline silicon module construction, or non-uniform deposition of PV material and laser scribing during thin _lm module construction, may introduce current mismatch in the module. Current mismatch is a consequence of connecting module cells which have non-identical electrical characteristics. When current mismatch occurs in a module, it is the cell generating the lowest current that determines the module output current and this leads to a decrease in the output power and lifespan of the module. Investigation of current uniformity and the different current reducing features in PV modules, which are potential sources of current mismatch, is therefore critical in optimising the performance of PV modules. In this study, a large area light beam induced current (LA-LBIC) measurement system was developed. This non-destructive technique was used to characterise crystalline silicon PV modules (mono-crystalline and multi-crystalline), thin _lm PV modules (amorphous silicon and copper indium diselenide) and a combined concentrator photovoltaic (CPV) module. A light source mounted onto a motorised x-y scanning stage was used to illuminate a PV module, or the Fresnel lens of a CPV module, point-by-point, while measuring the module output current. The measured current was mapped as a function of position and presented as an LBIC image. The point-illuminated circuit model of a PV module was designed and used to explain the variation in current between and within module cells in the LA-LBIC maps. Application of the model to crystalline silicon modules attributes the variation in photo-generated current between cells mainly to current mismatch between series connected cells. Current variation within cells is attributed to individual cell shunts. In the thin _lm modules, the model attributes the variation in photo-generated current mainly to differences in local cell shunts and series resistances originating from the scribing procedure during cell formation in the manufacturing process. In the PV modules studied, variation in photo-generated current was found to exist both between and within cells. The variation was more pronounced between cells than within cells. Module point I-V curves at different points of the module were measured in order to extract short circuit current, to quantify the variations between and within cells. A striation ring defect, causing a drop in short circuit current of 38%, was detected in the mono-crystalline module. Investigation of the striation ring defect indicated that the defect is active in the bulk (p-type) but inactive in the top (n-type) layer. Further characterisation of the defect revealed that a higher percentage loss in short circuit current occurs at lower light intensities. In the multi-crystalline silicon module, cracks were detected and found to electrically isolate the module cells into two parts, causing them to operate in parallel and consequently introducing current mismatch in the module. The I-V curve of the module at standard test condition (STC) revealed a step below the knee, which is a manifestation of current mismatch in the module. High currents, as a consequence of diffuse reflection, leading to multiple reflections by the top glass were also observed at localised points on the bus bar and cell separations. In the a-Si module, the variation in photo-current within some cells, was found to be substantial. In the copper indium diselenide (CIS) module, an electrical disconnection across the module cells was identified. A disconnection in the form of a triangular shape was also identified in this module, which completely disconnected the front contact of this area from the module. This unique disconnection feature caused current in the module to follow in a reverse direction when the light spot was incident within the boundary of the disconnection. Scans performed under different forward voltage biases were useful in identifying severely shunted module cells. A severely shunted cell was found to generate a higher photo-current than a good cell at the same forward bias voltage. This unique observation was explored further using point-illuminated module I-V measurements, and was found to be due to the crossing over of the I-V curves of the two cells. In order to explore the relationship between cell photo-current and cell shunt resistance, a method to determine the shunt resistances of the cells in an encapsulated module was devised. The method involves measuring the I-V curves of a fully illuminated module and a partially illuminated module when one of its cells is shaded and the I-V curves used to determine the short circuit current and the shunt resistance of the shaded cell. A strong correlation was found to exist between the short circuit current of the shaded cell and the cell shunt resistance, as well as between the short circuit current of the shaded cell and dark LBIC. The LA-LBIC technique was further applied to characterise a combine CPV module. Results showed that the Fresnel lens facets close to the centre generate a higher photo-current at the receiver than those towards the edges. The reduced photo-current towards the edges was attributed to losses due to di_raction, dielectric reflection and internal re_ection. About 65% of the area of the Fresnel lenses were found to be e_ective in light collection in terms of the photo-current generated at the receiver. Abrasions and scratches on the Fresnel lenses were identi_ed as some of the current limiting features in a CPV module. The LA-LBIC technique used in this study has demonstrated the potential to investigate current mismatch, current limiting and current enhancing features in PV modules. The capacity to further characterise current limiting features in order to investigate their effects on photo-current under different wavelengths and light intensities was also demonstrated. Extending the LA-LBIC technique to characterise a combined CPV module is a great achievement of this work.
- Full Text:
- Date Issued: 2017
Characterisation, antimalarial and biological activities of secondary metabolites from leaves of anonidium mannii
- Authors: Makoni, Pfungwa Gervase
- Date: 2017
- Subjects: Anonidium mannii -- Therapeutic use , Botanical chemistry , Annonaceae -- Therapeutic use , Apocynaceae -- Therapeutic use , Malaria -- Chemotherapy , Tuberculosis -- Chemotherapy , Bacterial diseases -- Chemotherapy , Cancer -- Chemotherapy
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4797 , vital:20725
- Description: Anonidium mannii is a plant of the Annonaceae genus which is used traditionally in Africa for the treatment of gonorrhoea, malaria, cancer, skin inflammation and dysentery. In this study we will evaluate antimalarial, antifungal, anti - tuberculosis, antibacterial activities and cytotoxicity of different fractions in order to provide a scientific rationale for the traditional use of Anonidium mannii as well as provide possible novel drugs in the treatment of multi drug resistant strains of parasites and bacteria. Extracts from dried leaves were obtained by using solvent extraction and different fractions obtained using column chromatography eluted with solvents of varying polarities to obtain a wide range of metabolites. The antimalarial activity of the various fractions and some pure compounds was evaluated using plasmodium lactate dehydrogenase (pLDH) assay. Cytotoxicity was evaluated using HeLa cells while anti – tuberculosis assay was evaluated using the green fluorescent protein. Antibacterial activity of the extracts was evaluated using micro-dilution assay against Gram-positive (Staphylococcus aureus and Enterococcus faecalis) bacteria and Gram-negative (Escherichia coli and Salmonella typhi) bacteria. Antifungal activity was evaluated against Candida albicans. The antimalarial assays yielded some fractions with promising IC50 values. The selected fractions yielded activities ranging between 0.73 μg/mL and 20.23 μg/mL. The fraction with the best activity was obtained from a hexane/ethyl acetate fraction. AM1C, a cholestane, showed the best activity from the pure metabolites that were screened. AM3C, stigmasterol, a pure compound gave the best antifungal activity with an MIC of 0.063 μg/mL. AM9C another pure compound (sterol) showed the best activity against S. typhi with a value of 0.031 μg/mL. AM2C a pure compound showed an activity of 0.063 μg/mL against E. faecalis. The best cytotoxicity was demonstrated by the fraction C2AM3P with a cell viability of 7.1 ± 0.2 % while AM1C had a viability of 20.2 ± 1.2 %. Several pure metabolites were isolated and four of these were positively identified as steroids. Of these steroids the structure of three novel metabolites from A. mannii was deduced. The study showed promising antibacterial, antifungal, anti – tuberculosis, antimalarial and anticancer activity of A. mannii. These results validate the use of A. manni against cancer, skin inflammation which is caused by fungus, malaria and bacterial diseases.
- Full Text:
- Date Issued: 2017
- Authors: Makoni, Pfungwa Gervase
- Date: 2017
- Subjects: Anonidium mannii -- Therapeutic use , Botanical chemistry , Annonaceae -- Therapeutic use , Apocynaceae -- Therapeutic use , Malaria -- Chemotherapy , Tuberculosis -- Chemotherapy , Bacterial diseases -- Chemotherapy , Cancer -- Chemotherapy
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/4797 , vital:20725
- Description: Anonidium mannii is a plant of the Annonaceae genus which is used traditionally in Africa for the treatment of gonorrhoea, malaria, cancer, skin inflammation and dysentery. In this study we will evaluate antimalarial, antifungal, anti - tuberculosis, antibacterial activities and cytotoxicity of different fractions in order to provide a scientific rationale for the traditional use of Anonidium mannii as well as provide possible novel drugs in the treatment of multi drug resistant strains of parasites and bacteria. Extracts from dried leaves were obtained by using solvent extraction and different fractions obtained using column chromatography eluted with solvents of varying polarities to obtain a wide range of metabolites. The antimalarial activity of the various fractions and some pure compounds was evaluated using plasmodium lactate dehydrogenase (pLDH) assay. Cytotoxicity was evaluated using HeLa cells while anti – tuberculosis assay was evaluated using the green fluorescent protein. Antibacterial activity of the extracts was evaluated using micro-dilution assay against Gram-positive (Staphylococcus aureus and Enterococcus faecalis) bacteria and Gram-negative (Escherichia coli and Salmonella typhi) bacteria. Antifungal activity was evaluated against Candida albicans. The antimalarial assays yielded some fractions with promising IC50 values. The selected fractions yielded activities ranging between 0.73 μg/mL and 20.23 μg/mL. The fraction with the best activity was obtained from a hexane/ethyl acetate fraction. AM1C, a cholestane, showed the best activity from the pure metabolites that were screened. AM3C, stigmasterol, a pure compound gave the best antifungal activity with an MIC of 0.063 μg/mL. AM9C another pure compound (sterol) showed the best activity against S. typhi with a value of 0.031 μg/mL. AM2C a pure compound showed an activity of 0.063 μg/mL against E. faecalis. The best cytotoxicity was demonstrated by the fraction C2AM3P with a cell viability of 7.1 ± 0.2 % while AM1C had a viability of 20.2 ± 1.2 %. Several pure metabolites were isolated and four of these were positively identified as steroids. Of these steroids the structure of three novel metabolites from A. mannii was deduced. The study showed promising antibacterial, antifungal, anti – tuberculosis, antimalarial and anticancer activity of A. mannii. These results validate the use of A. manni against cancer, skin inflammation which is caused by fungus, malaria and bacterial diseases.
- Full Text:
- Date Issued: 2017
Characterization of a glycated gelatin model to explore the therapeutic properties of macrofungi in diabetic wound healing: an in vitro study
- Authors: Pringle, Nadine Alex
- Date: 2017
- Subjects: Diabetes -- Animal models Chronic diseases -- Age factors
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/11992 , vital:27017
- Description: Diabetic wounds frequently undergo impaired and prolonged wound healing due to a multitude of factors including hypoxia, impaired angiogenesis, hyperglycaemia, formation of ROS and AGEs, and infection - all of which may lead to cellular dysfunction. To date, however, treatment options for individuals suffering from impaired diabetic wound healing are limited, non-specific, and generally unsuccessful. The search for new and effective treatment strategies is severely hampered by the availability of adequately characterized screening models which comprehensively mimic the complexity of the diabetic wound healing process. In order to explore natural products as potential therapeutics to treat diabetic wounds and to encourage more research on this topic, this study sought out to develop and characterize a more convenient and cost effective in vitro screening assay which mimics the effects of protein glycation on the healing process of diabetic wounds. As proof of principal, this model was subsequently used to screen the potential of five wild mushroom species (P. tinctorius, R. capensis, B. badius, P. ostreatus and G. lucidum) as suitable diabetic wound healing therapies. The glycated gelatin model developed during this study was found to suitably mimic the diabetic state as it successfully simulated the major cellular dysfunctions in macrophages (NO production, phagocytosis, macrophage polarization, NF-ĸB translocation and COX-2 expression) and fibroblasts (proliferation and migration) documented during diabetic wound healing. Together these findings provide confidence that the model may serve as a valuable tool to study the poorly understood mechanisms which characterize cellular dysfunction in response to AGE accumulation and also to aid the identification of novel therapeutic agents to treat this pathology. Screening a number of mushroom extracts revealed that the ethanol extracts of R. capensis and P. ostreatus had the greatest potential for attenuating chronic inflammation due to their ability to promote macrophage phagocytosis, increased M2 activation (R. capensis) and decreased M1 activation (P. ostreatus) as well as reduced COX-2 expression while the water extract of G. lucidum proved to be the most promising candidate for stimulating fibroplasia as it was the most successful at promoting both fibroblast proliferation and migration. Different mushroom species were thus shown to promote different stages of the wound healing process providing sufficient evidence to support further studies related to the use of macrofungi as therapeutic agents in the search for more cost-effective and efficient treatment strategies for impaired diabetic wound healing.
- Full Text:
- Date Issued: 2017
- Authors: Pringle, Nadine Alex
- Date: 2017
- Subjects: Diabetes -- Animal models Chronic diseases -- Age factors
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/11992 , vital:27017
- Description: Diabetic wounds frequently undergo impaired and prolonged wound healing due to a multitude of factors including hypoxia, impaired angiogenesis, hyperglycaemia, formation of ROS and AGEs, and infection - all of which may lead to cellular dysfunction. To date, however, treatment options for individuals suffering from impaired diabetic wound healing are limited, non-specific, and generally unsuccessful. The search for new and effective treatment strategies is severely hampered by the availability of adequately characterized screening models which comprehensively mimic the complexity of the diabetic wound healing process. In order to explore natural products as potential therapeutics to treat diabetic wounds and to encourage more research on this topic, this study sought out to develop and characterize a more convenient and cost effective in vitro screening assay which mimics the effects of protein glycation on the healing process of diabetic wounds. As proof of principal, this model was subsequently used to screen the potential of five wild mushroom species (P. tinctorius, R. capensis, B. badius, P. ostreatus and G. lucidum) as suitable diabetic wound healing therapies. The glycated gelatin model developed during this study was found to suitably mimic the diabetic state as it successfully simulated the major cellular dysfunctions in macrophages (NO production, phagocytosis, macrophage polarization, NF-ĸB translocation and COX-2 expression) and fibroblasts (proliferation and migration) documented during diabetic wound healing. Together these findings provide confidence that the model may serve as a valuable tool to study the poorly understood mechanisms which characterize cellular dysfunction in response to AGE accumulation and also to aid the identification of novel therapeutic agents to treat this pathology. Screening a number of mushroom extracts revealed that the ethanol extracts of R. capensis and P. ostreatus had the greatest potential for attenuating chronic inflammation due to their ability to promote macrophage phagocytosis, increased M2 activation (R. capensis) and decreased M1 activation (P. ostreatus) as well as reduced COX-2 expression while the water extract of G. lucidum proved to be the most promising candidate for stimulating fibroplasia as it was the most successful at promoting both fibroblast proliferation and migration. Different mushroom species were thus shown to promote different stages of the wound healing process providing sufficient evidence to support further studies related to the use of macrofungi as therapeutic agents in the search for more cost-effective and efficient treatment strategies for impaired diabetic wound healing.
- Full Text:
- Date Issued: 2017
Characterization of livestock manures biochar and their effect on soil chemical properties and crop growth under glasshouse conditions
- Authors: Dzvene, Admire Rukudzo
- Date: 2017
- Subjects: Biochar Soil fertility
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9863 , vital:35091
- Description: Biochar is being promoted as an amendment to improve soil properties, crop productivity, and carbon sequestration. In Africa, biochar adoption is hindered by production systems which include technology and feedstocks availability. However, little research has been published on the influence of biochar incorporation on soil chemical properties and early crop establishment. The aim of this study was to characterize biochar from cattle, goat, sheep and poultry kraal manures and their effect on soil properties and crop growth. This was guided by the following specific objectives, (i) to explore the mixed-farming system of Raymond Mhlaba Municipality on availability and utilization of livestock kraal manures (ii) to characterize biochar samples produced from cattle, goat, sheep and poultry kraal manures (iii) to determine the nutrient release patterns of biochars amended in a degraded soil (iv) to determine the effectiveness of converting manure to biochar and cattle manure on maize early development and, (v) to determine the effects of biochar type and application rate on early maize development. The farming system was surveyed to identify quantities of livestock manure, its availability and utilization for soil fertility amendment in cropping in the Raymond Mhlaba Municipality. The emerging results across all the villages revealed that, the mean livestock numbers were, 9.24±8.21 sheep, 9.37±8.15 goats, 7.95±7.66 cattle and 9.02±9.47 chickens. The findings revealed that 94 (82.4percent) of the respondents had access to cropland allocations in the form of outfields and homegardens. However, only 55 (48.2percent) of the respondents were currently cropping their fields. Maize was the most common crop grown followed by butternuts and potatoes. The application of manure by the respondents currently cropping their lands was only 40 (35.1percent) and the quantities used ranged from 210-1450 kg ha-1. The results further showed that the estimated total manure production was 2.9 t year-1, 0.82 t year-1, 0.04 t year-1, and 0.8 t year-1 from cattle, goats, chicken, and sheeps respectively. Drum retort method of slow pyrolysis at a temperature of 400°C was used to produce biochar from cattle, goat, sheep and poultry manure feedstocks. The biochar yields were 63percent, 72percent, 61percent and 83percent on a weight basis for the different feedstocks. The chemical properties of the biochar were significantly different from those of the manure from which they were made. Biochars that were high in Ca and K such as poultry manure biochar and sheep manure biochar indicated higher pH and electrical conductivity values. For instance, sheep manure biochar was (8.1 mS cm-1) and poultry manure biochar was (9.2 mS cm-1). The scanning electron microscopy (SEM) revealed that, the biochars had porous structures ranging from 1.23um to 5.23um in diameter which are important for water conductance and holding capacity. The target soil carbon level to determine the effects of biochar soil incorporation was 2percent and the soil had 0.7percent. Therefore, it was treated with four livestock manure biochars at application rates of 0; 53.2 t ha-1 (CMB); 48.1 t ha-1 (GMB); 50.7 t ha-1 (SMB); and 40.2 t ha-1 (PMB) based on their carbon content to supplement the soil carbon difference. The effect on soil pH was such that SMB increased to 6.44, PMB (6.45), CMB (6.54), and GMB (6.53) relative to the control which did not show any changes. An increase was also observed on Olsen P concentrations (mg P kg-1) which varied with biochar treatments: PMB (6.22), GMB (6.37), SMB (6.44) and CMB (6.44) and were significantly higher than the control. Ammonium-N(NH4+) concentrations (mg NH4+-N) were increased in biochar treatments but, no significant differences were obtained with sampling time. SMB released 7.95 mg kg-1, CMB 7.50 mg kg- 1, PMB 7.46 mg kg-1 and GMB 7.05 mg kg-1, compared to the control 3.23 mg kg-1. Maize growth in soil sampled from farmers fields in cultivation and abandoned treated with biochar without application of inorganic fertilizer did not differ with control (soil only) treatments. However, maize growth in soil treated with biochar and inorganic fertilizer was comparative to manure treatments. This resulted in a follow up study to elucidate the effects of biochar alone and was carried out with cattle, goat, sheep and poultry biochars at five application rates (0, 100, 200, 300, and 400 kg C ha-1) applied to a sandy loam and a clayey loam soil of the Oakleaf and Tukulu soil forms respectively. Post-harvest soil pH, electrical conductivity and Olsen P showed improvements in biochar treatments relative to the control. Improvements in the chemical parameters and plant growth increased simultaneously with biochar application rate. Maize growth was not affected by biochar application at different rates.
- Full Text:
- Date Issued: 2017
- Authors: Dzvene, Admire Rukudzo
- Date: 2017
- Subjects: Biochar Soil fertility
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9863 , vital:35091
- Description: Biochar is being promoted as an amendment to improve soil properties, crop productivity, and carbon sequestration. In Africa, biochar adoption is hindered by production systems which include technology and feedstocks availability. However, little research has been published on the influence of biochar incorporation on soil chemical properties and early crop establishment. The aim of this study was to characterize biochar from cattle, goat, sheep and poultry kraal manures and their effect on soil properties and crop growth. This was guided by the following specific objectives, (i) to explore the mixed-farming system of Raymond Mhlaba Municipality on availability and utilization of livestock kraal manures (ii) to characterize biochar samples produced from cattle, goat, sheep and poultry kraal manures (iii) to determine the nutrient release patterns of biochars amended in a degraded soil (iv) to determine the effectiveness of converting manure to biochar and cattle manure on maize early development and, (v) to determine the effects of biochar type and application rate on early maize development. The farming system was surveyed to identify quantities of livestock manure, its availability and utilization for soil fertility amendment in cropping in the Raymond Mhlaba Municipality. The emerging results across all the villages revealed that, the mean livestock numbers were, 9.24±8.21 sheep, 9.37±8.15 goats, 7.95±7.66 cattle and 9.02±9.47 chickens. The findings revealed that 94 (82.4percent) of the respondents had access to cropland allocations in the form of outfields and homegardens. However, only 55 (48.2percent) of the respondents were currently cropping their fields. Maize was the most common crop grown followed by butternuts and potatoes. The application of manure by the respondents currently cropping their lands was only 40 (35.1percent) and the quantities used ranged from 210-1450 kg ha-1. The results further showed that the estimated total manure production was 2.9 t year-1, 0.82 t year-1, 0.04 t year-1, and 0.8 t year-1 from cattle, goats, chicken, and sheeps respectively. Drum retort method of slow pyrolysis at a temperature of 400°C was used to produce biochar from cattle, goat, sheep and poultry manure feedstocks. The biochar yields were 63percent, 72percent, 61percent and 83percent on a weight basis for the different feedstocks. The chemical properties of the biochar were significantly different from those of the manure from which they were made. Biochars that were high in Ca and K such as poultry manure biochar and sheep manure biochar indicated higher pH and electrical conductivity values. For instance, sheep manure biochar was (8.1 mS cm-1) and poultry manure biochar was (9.2 mS cm-1). The scanning electron microscopy (SEM) revealed that, the biochars had porous structures ranging from 1.23um to 5.23um in diameter which are important for water conductance and holding capacity. The target soil carbon level to determine the effects of biochar soil incorporation was 2percent and the soil had 0.7percent. Therefore, it was treated with four livestock manure biochars at application rates of 0; 53.2 t ha-1 (CMB); 48.1 t ha-1 (GMB); 50.7 t ha-1 (SMB); and 40.2 t ha-1 (PMB) based on their carbon content to supplement the soil carbon difference. The effect on soil pH was such that SMB increased to 6.44, PMB (6.45), CMB (6.54), and GMB (6.53) relative to the control which did not show any changes. An increase was also observed on Olsen P concentrations (mg P kg-1) which varied with biochar treatments: PMB (6.22), GMB (6.37), SMB (6.44) and CMB (6.44) and were significantly higher than the control. Ammonium-N(NH4+) concentrations (mg NH4+-N) were increased in biochar treatments but, no significant differences were obtained with sampling time. SMB released 7.95 mg kg-1, CMB 7.50 mg kg- 1, PMB 7.46 mg kg-1 and GMB 7.05 mg kg-1, compared to the control 3.23 mg kg-1. Maize growth in soil sampled from farmers fields in cultivation and abandoned treated with biochar without application of inorganic fertilizer did not differ with control (soil only) treatments. However, maize growth in soil treated with biochar and inorganic fertilizer was comparative to manure treatments. This resulted in a follow up study to elucidate the effects of biochar alone and was carried out with cattle, goat, sheep and poultry biochars at five application rates (0, 100, 200, 300, and 400 kg C ha-1) applied to a sandy loam and a clayey loam soil of the Oakleaf and Tukulu soil forms respectively. Post-harvest soil pH, electrical conductivity and Olsen P showed improvements in biochar treatments relative to the control. Improvements in the chemical parameters and plant growth increased simultaneously with biochar application rate. Maize growth was not affected by biochar application at different rates.
- Full Text:
- Date Issued: 2017
Characterization of maize biochars, their effects on soils, early maize growth and effectiveness of fertilizers
- Authors: Pinkson, Sibusisiwe
- Date: 2017
- Subjects: Soil fertility Crops and soils Biochar
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9974 , vital:35211
- Description: The use of maize biochar in smallholder cropping systems of the Eastern Cape (EC) Province could be a strategy that helps mitigate a common challenge such as poor soil fertility in maize productivity. The current study investigated the following: a) comparison of maize biochars derived from the drum and pit kiln pyrolytic systems as soil amendments; b) effects of maize biochars on soil acidity and extractable nutrients of three arable soil types of the EC Province; c) effects of maize biochars on early maize growth and nutrient uptake; d) effect of maize biochars on the effectiveness of organic and inorganic fertilizers for improved soil quality and maize growth. Maize biochars were produced from two pyrolytic systems namely the pit and drum kiln, each maize biochar type was analyzed with respect to its chemical and physical characteristics to investigate its potential as a soil amendment. Both pyrolytic systems were monitored to identify optimum pyrolytic temperatures reached by each process. Observed peak pyrolytic temperature were 300 °C and 500 °C for the pit and drum pyrolytic systems respectively. Both maize biochar types were alkaline in nature with pH values of 8.36 (H2O) and 7.45 (KCl) and 8.95 (H2O) and 7.82 (KCl) for pit and drum biochar respectively. Electrical conductivity (Ec) of drum biochar was 199 mS /m and that of pit biochar 186 mS /m. Generally, there were no differences in the chemical compositions of the two biochar types. However, in most analysis drum biochar gave higher values in nutrient composition compared to the pit biochar. Moreover, according to SEM analysis both biochar materials consisted of an increase in pore size distribution compared to the original feedstock material. In addition, an increase in nutrient composition in the two biochar types compared to the original feedstock was also observed. In an incubation experiment, potential effects of the two maize biochar types derived from the pit and drum kiln pyrolytic systems on soil acidity and nutrients were investigated on three arable soil types of the EC Province. Three soil types investigated were obtained from the University of Fort Hare (UFH), Phandulwazi (PND) and Msobomvu (MSV). The UFH soil was a sandy loam of the Oakleaf form or Eutric Cambisol, the PND soil was a sandy loam over sandy clay a Haplic Luvisol, while the MSV soil was a clay loam of Westleigh form a Ferric luvisol. Both maize biochar types significantly (p< 0.05) increased soil pH of the three soil types in the incubation study from an average of 4.68- 7.5. Soil pH improvement was in the following order pit biochar> drum biochar> control. Also, the two maize biochar types significantly (p< 0.05) increased the release of cations namely Ca, Mg and Na however, some decrease in nutrient concentrations were observed due to increase in pH levels at the later stage of the study. Biochar incorporation increased extractable P release from 30- 40 mg P/kg to an average range of between 120- 160 mg P/kg across all soil types. A glasshouse study was also conducted investigating the effect of different biochar rates of the two maize biochar types used in the previous studies on early maize growth and nutrient uptake, same soil types were used as those in the incubation study. Biochar was applied at application rates of 0, 100, 200 and 300 kg C/ha of biochar. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. Generally, a significant increase in maize growth parameters such as plant height, stem girth, number of leaves and leaf area increased after biochar additions compared to the control. Both biochars significantly improved maize seedling growth at an application rate of 200 kg C/haHowever, the two biochar types displayed varying impacts on maize growth due to influence of soil type and biochar application rates. Nutrient- uptake of Ca, P, Na and Mg showed to improve at an application rate of 200 kg C/ha for both biochar types showing a 50 percent increase compared to the control. Nutrient- uptake patterns for P, Ca, Mg and Na differed across all soil types, mainly due to changes in pH and Na levels which were influenced by increased biochar concentrations resulting in nutrient deficiency. Another glasshouse experiment aimed at investigating the effects on the two maize biochar types on influencing the effectiveness of both organic and inorganic fertilizers for improved early maize growth and soil productivity. Biochar was applied at an application rate of 400 kg C/ha of biochar, fertilizer was applied at application rates of 0, 10, 20, 30 and 40 kg N/ha and manure at 0, 10, 20, 30 and 40 t/ha respectively. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. In the 1st cycle, manure rate of 40 t/ha resulted in the highest plant height of maize seedlings grown in the glasshouse, biochar type also showed to influence plant height. After the 1st harvest Mg, K and P levels improved at 30 t/ha, Na at 20 t/ha and Ca 40 t/ha of manure. Plant height and stem girth improved at 30 kg N/ha of fertilizer, however, nutrient levels for Ca, K and Mg decreased after the 1st harvest, while Na levels increased. Nutrient uptake was the highest for Mg and Na at 40 kg N/ha while for Ca at 30 kg N/ha of fertilizer. During the 2nd cycle plant height was the highest at 30 t/ha of manure, and effect of manure rate was significant (p<0.05) for number of leaves, plant height and biomass. Whereas, manure rate and biochar type effect were insignificant (p>0.05) for pH, Ec and nutrient uptake changes. Maize seedling showed significant response to fertilizer 40 kg N/ha for most of the growth parameters measured (P<0.05), except for germination percentage. All treatments investigated had no effect on germination percentage. The two biochar types showed significant (p<0.05) effects on soil pH and Ec. Drum biochar was slightly better performing than pit biochar. Results obtained from the various studies suggests that maize biochars derived from the pit and drum pyrolytic systems are potential soil amendments in correcting soil acidity and nutrient deficiency in the EC Province. Both biochar types have shown abilities to improve early maize growth and effectiveness of fertilizers in maize based systems of the EC Province. However, some variations in soil fertility and early maize growth were observed as a result of the soil type response towards the two biochar applications. This could also have risen as a result of a number of factors such as the nutritional composition of biochar material, initial soil type chemical composition, biochar and fertilizer application rates and time taken or period to complete each study. Therefore, further experiments should be conducted to validate these results, preferable having longer periods of study, moreover, field experiments. In addition, investigations on potential feedstock materials such as animal wastes used as biochar in the EC Province can be conducted.
- Full Text:
- Date Issued: 2017
- Authors: Pinkson, Sibusisiwe
- Date: 2017
- Subjects: Soil fertility Crops and soils Biochar
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/9974 , vital:35211
- Description: The use of maize biochar in smallholder cropping systems of the Eastern Cape (EC) Province could be a strategy that helps mitigate a common challenge such as poor soil fertility in maize productivity. The current study investigated the following: a) comparison of maize biochars derived from the drum and pit kiln pyrolytic systems as soil amendments; b) effects of maize biochars on soil acidity and extractable nutrients of three arable soil types of the EC Province; c) effects of maize biochars on early maize growth and nutrient uptake; d) effect of maize biochars on the effectiveness of organic and inorganic fertilizers for improved soil quality and maize growth. Maize biochars were produced from two pyrolytic systems namely the pit and drum kiln, each maize biochar type was analyzed with respect to its chemical and physical characteristics to investigate its potential as a soil amendment. Both pyrolytic systems were monitored to identify optimum pyrolytic temperatures reached by each process. Observed peak pyrolytic temperature were 300 °C and 500 °C for the pit and drum pyrolytic systems respectively. Both maize biochar types were alkaline in nature with pH values of 8.36 (H2O) and 7.45 (KCl) and 8.95 (H2O) and 7.82 (KCl) for pit and drum biochar respectively. Electrical conductivity (Ec) of drum biochar was 199 mS /m and that of pit biochar 186 mS /m. Generally, there were no differences in the chemical compositions of the two biochar types. However, in most analysis drum biochar gave higher values in nutrient composition compared to the pit biochar. Moreover, according to SEM analysis both biochar materials consisted of an increase in pore size distribution compared to the original feedstock material. In addition, an increase in nutrient composition in the two biochar types compared to the original feedstock was also observed. In an incubation experiment, potential effects of the two maize biochar types derived from the pit and drum kiln pyrolytic systems on soil acidity and nutrients were investigated on three arable soil types of the EC Province. Three soil types investigated were obtained from the University of Fort Hare (UFH), Phandulwazi (PND) and Msobomvu (MSV). The UFH soil was a sandy loam of the Oakleaf form or Eutric Cambisol, the PND soil was a sandy loam over sandy clay a Haplic Luvisol, while the MSV soil was a clay loam of Westleigh form a Ferric luvisol. Both maize biochar types significantly (p< 0.05) increased soil pH of the three soil types in the incubation study from an average of 4.68- 7.5. Soil pH improvement was in the following order pit biochar> drum biochar> control. Also, the two maize biochar types significantly (p< 0.05) increased the release of cations namely Ca, Mg and Na however, some decrease in nutrient concentrations were observed due to increase in pH levels at the later stage of the study. Biochar incorporation increased extractable P release from 30- 40 mg P/kg to an average range of between 120- 160 mg P/kg across all soil types. A glasshouse study was also conducted investigating the effect of different biochar rates of the two maize biochar types used in the previous studies on early maize growth and nutrient uptake, same soil types were used as those in the incubation study. Biochar was applied at application rates of 0, 100, 200 and 300 kg C/ha of biochar. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. Generally, a significant increase in maize growth parameters such as plant height, stem girth, number of leaves and leaf area increased after biochar additions compared to the control. Both biochars significantly improved maize seedling growth at an application rate of 200 kg C/haHowever, the two biochar types displayed varying impacts on maize growth due to influence of soil type and biochar application rates. Nutrient- uptake of Ca, P, Na and Mg showed to improve at an application rate of 200 kg C/ha for both biochar types showing a 50 percent increase compared to the control. Nutrient- uptake patterns for P, Ca, Mg and Na differed across all soil types, mainly due to changes in pH and Na levels which were influenced by increased biochar concentrations resulting in nutrient deficiency. Another glasshouse experiment aimed at investigating the effects on the two maize biochar types on influencing the effectiveness of both organic and inorganic fertilizers for improved early maize growth and soil productivity. Biochar was applied at an application rate of 400 kg C/ha of biochar, fertilizer was applied at application rates of 0, 10, 20, 30 and 40 kg N/ha and manure at 0, 10, 20, 30 and 40 t/ha respectively. The glasshouse experiment consisted of two cycles, each with a six week period of monitoring maize seedling growth development. In the 1st cycle, manure rate of 40 t/ha resulted in the highest plant height of maize seedlings grown in the glasshouse, biochar type also showed to influence plant height. After the 1st harvest Mg, K and P levels improved at 30 t/ha, Na at 20 t/ha and Ca 40 t/ha of manure. Plant height and stem girth improved at 30 kg N/ha of fertilizer, however, nutrient levels for Ca, K and Mg decreased after the 1st harvest, while Na levels increased. Nutrient uptake was the highest for Mg and Na at 40 kg N/ha while for Ca at 30 kg N/ha of fertilizer. During the 2nd cycle plant height was the highest at 30 t/ha of manure, and effect of manure rate was significant (p<0.05) for number of leaves, plant height and biomass. Whereas, manure rate and biochar type effect were insignificant (p>0.05) for pH, Ec and nutrient uptake changes. Maize seedling showed significant response to fertilizer 40 kg N/ha for most of the growth parameters measured (P<0.05), except for germination percentage. All treatments investigated had no effect on germination percentage. The two biochar types showed significant (p<0.05) effects on soil pH and Ec. Drum biochar was slightly better performing than pit biochar. Results obtained from the various studies suggests that maize biochars derived from the pit and drum pyrolytic systems are potential soil amendments in correcting soil acidity and nutrient deficiency in the EC Province. Both biochar types have shown abilities to improve early maize growth and effectiveness of fertilizers in maize based systems of the EC Province. However, some variations in soil fertility and early maize growth were observed as a result of the soil type response towards the two biochar applications. This could also have risen as a result of a number of factors such as the nutritional composition of biochar material, initial soil type chemical composition, biochar and fertilizer application rates and time taken or period to complete each study. Therefore, further experiments should be conducted to validate these results, preferable having longer periods of study, moreover, field experiments. In addition, investigations on potential feedstock materials such as animal wastes used as biochar in the EC Province can be conducted.
- Full Text:
- Date Issued: 2017
Characterization of Staphylococcus aureus and Methicillin-resistant Staphylococcus aureus (MRSA) in selected recreational marine waters and beach sand in the Eastern Cape Province, South Africa
- Authors: Ankabi, Olufemi Emmanuel
- Date: 2017
- Subjects: Marine microbiology -- South Africa -- Eastern Cape Staphylococcus aureus infections -- South Africa -- Eastern Cape Pathogenic microorganisms
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/4992 , vital:28915
- Description: Staphylococcus aureus is a Gram-positive bacterium predominantly found on human skin and in nasal passages with 20 to 40 percent of the population carrying this organism. Although S. aureus is an unspectacular, non-motile coccoid bacterium, it is a perilous human pathogen associated with both nosocomial and community-acquired infections and it is increasingly becoming virulent and resistant to most antibiotics. It is responsible for several infections such as osteomyelitis, toxin-mediated diseases and bacteraemia, with severe infections arising from strains harbouring antibiotic resistance genes together with virulence genes. S. aureus has been largely confined to hospitals and long-term care facilities, but it is now emerging in the community in places such as recreational beach waters, and occurring in healthy individuals with no associated risk factors. This organism has been reported to be released by swimmers in beaches, suggesting that recreational waters are a potential source of community-acquired S. aureus infections. It is possibly the pathogen of greatest concern due to its intrinsic virulence, its capacity to cause various life-threatening infections, and its ability to adapt to varying environmental conditions. This study was aimed at characterizing S. aureus and methicillin-resistant S. aureus (MRSA) in Port Elizabeth, Port Alfred, Kenton-on-sea and East London beaches of the Eastern Cape Province of South Africa. This was done by investigating the occurrence, antibiotic susceptibilities, antibiotic-resistant genes and virulence genes profiles of S. aureus in the selected beaches. To achieve this aim, 249 beach sand and water samples were obtained from the beaches during the period of April 2015 to April 2016. Physico-chemical parameters of beach water was investigated on site using a multi-parameter ion specific meter during sample collection. Samples were filtered and inoculated on m-Endo agar, m-FC agar and bile aesculin azide agar for total and faecal coliform as well as Enterococci respectively. For isolation of S. aureus and MRSA, samples were cultured on Mannitol salt agar and Staph 24 agar. S. aureus was identified using morphological, Gram staining and molecular (PCR) methods. The isolates were further characterized by determining their antimicrobial resistance profiles, antibiotic resistant genes (mecA, rpoB, blaZ, ermB and tetK genes) and detection of virulent genes encoding intracellular adhesion (icaA), enterotoxin (seaA) and cytolytic toxins (PVL). The majority of study sites passed the directives of physico-chemical standards levels set by WHO during the study period. A total of 143 presumptive isolates were obtained of which 30 (30 percent) were confirmed as S. aureus with 22 (73.3 percent) of these confirmed isolates from marine water and 8 (26.7 percent) from marine sand. Upon culturing on MRSA 2 agar, 15 (50 percent) of isolates showed phonotypic resistance to methicillin. Based on Antimicrobial susceptibility tests, (22/30) 73.3 percent of the isolates showed phonotypic resistance to oxacillin. Out of the 30 isolates, 16 (53.3 percent) were mecA positive and were considered methicillin-resistant S. aureus. S. aureus showed high susceptibility to gentamycin, cefoxithin, levofloxacin, ciprofloxacin, imipenem, and chloramphenicol. A large proportion (36.67 percent to 96.7 percent) of the S. aureus isolates was resistant to penicillin G, ampicillin, oxacillin, tetracycline, clindamycin, rifampicin, vancomycin, sulfamethoxazole-Trimethoprim and erythromycin. Multiple antibiotic resistance (MAR) phenotypes were generated from 7 S. aureus isolates showing resistance to three or more antibiotics. The mecA, rpoB, blaZ, ermB and tetM genes coding for methicillin, rifampicin, βeta-lactam, erythromycin and tetracycline antibiotics resistance was detected in 5 (22.7 percent), 11 (45.8 percent), 16 (55.2 percent), 15 (71.4 percent) and 8 (72.7 percent) respectively. The PVL, icaA and seaA genes coding for virulent determinants were detected in 50, 20 and 13.3 percent of the confirmed isolates respectively. Physico-chemical and faecal indicator bacteria results obtained from this study can assist municipal authorities in developing appropriate management strategies for beaches in the study area. The findings of this study showed that the investigated beaches were contaminated with toxigenic and multi-drug resistant S. aureus strains. This emphasizes the need for the implementation of better control measures to reduce the occurrence of antibiotic resistant S. aureus and of virulent S. aureus strains in recreational waters. In our study it was established that the potential of recreational waters to be reservoirs of S. aureus should not be taken for granted, and it is important that beach goers be educated about this organism as well as other related pathogens that could affect human health, especially immuno-compromised individuals. The community should be educated on antibiotic stewardship and the detrimental effects of antibiotics abuse.
- Full Text:
- Date Issued: 2017
- Authors: Ankabi, Olufemi Emmanuel
- Date: 2017
- Subjects: Marine microbiology -- South Africa -- Eastern Cape Staphylococcus aureus infections -- South Africa -- Eastern Cape Pathogenic microorganisms
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/4992 , vital:28915
- Description: Staphylococcus aureus is a Gram-positive bacterium predominantly found on human skin and in nasal passages with 20 to 40 percent of the population carrying this organism. Although S. aureus is an unspectacular, non-motile coccoid bacterium, it is a perilous human pathogen associated with both nosocomial and community-acquired infections and it is increasingly becoming virulent and resistant to most antibiotics. It is responsible for several infections such as osteomyelitis, toxin-mediated diseases and bacteraemia, with severe infections arising from strains harbouring antibiotic resistance genes together with virulence genes. S. aureus has been largely confined to hospitals and long-term care facilities, but it is now emerging in the community in places such as recreational beach waters, and occurring in healthy individuals with no associated risk factors. This organism has been reported to be released by swimmers in beaches, suggesting that recreational waters are a potential source of community-acquired S. aureus infections. It is possibly the pathogen of greatest concern due to its intrinsic virulence, its capacity to cause various life-threatening infections, and its ability to adapt to varying environmental conditions. This study was aimed at characterizing S. aureus and methicillin-resistant S. aureus (MRSA) in Port Elizabeth, Port Alfred, Kenton-on-sea and East London beaches of the Eastern Cape Province of South Africa. This was done by investigating the occurrence, antibiotic susceptibilities, antibiotic-resistant genes and virulence genes profiles of S. aureus in the selected beaches. To achieve this aim, 249 beach sand and water samples were obtained from the beaches during the period of April 2015 to April 2016. Physico-chemical parameters of beach water was investigated on site using a multi-parameter ion specific meter during sample collection. Samples were filtered and inoculated on m-Endo agar, m-FC agar and bile aesculin azide agar for total and faecal coliform as well as Enterococci respectively. For isolation of S. aureus and MRSA, samples were cultured on Mannitol salt agar and Staph 24 agar. S. aureus was identified using morphological, Gram staining and molecular (PCR) methods. The isolates were further characterized by determining their antimicrobial resistance profiles, antibiotic resistant genes (mecA, rpoB, blaZ, ermB and tetK genes) and detection of virulent genes encoding intracellular adhesion (icaA), enterotoxin (seaA) and cytolytic toxins (PVL). The majority of study sites passed the directives of physico-chemical standards levels set by WHO during the study period. A total of 143 presumptive isolates were obtained of which 30 (30 percent) were confirmed as S. aureus with 22 (73.3 percent) of these confirmed isolates from marine water and 8 (26.7 percent) from marine sand. Upon culturing on MRSA 2 agar, 15 (50 percent) of isolates showed phonotypic resistance to methicillin. Based on Antimicrobial susceptibility tests, (22/30) 73.3 percent of the isolates showed phonotypic resistance to oxacillin. Out of the 30 isolates, 16 (53.3 percent) were mecA positive and were considered methicillin-resistant S. aureus. S. aureus showed high susceptibility to gentamycin, cefoxithin, levofloxacin, ciprofloxacin, imipenem, and chloramphenicol. A large proportion (36.67 percent to 96.7 percent) of the S. aureus isolates was resistant to penicillin G, ampicillin, oxacillin, tetracycline, clindamycin, rifampicin, vancomycin, sulfamethoxazole-Trimethoprim and erythromycin. Multiple antibiotic resistance (MAR) phenotypes were generated from 7 S. aureus isolates showing resistance to three or more antibiotics. The mecA, rpoB, blaZ, ermB and tetM genes coding for methicillin, rifampicin, βeta-lactam, erythromycin and tetracycline antibiotics resistance was detected in 5 (22.7 percent), 11 (45.8 percent), 16 (55.2 percent), 15 (71.4 percent) and 8 (72.7 percent) respectively. The PVL, icaA and seaA genes coding for virulent determinants were detected in 50, 20 and 13.3 percent of the confirmed isolates respectively. Physico-chemical and faecal indicator bacteria results obtained from this study can assist municipal authorities in developing appropriate management strategies for beaches in the study area. The findings of this study showed that the investigated beaches were contaminated with toxigenic and multi-drug resistant S. aureus strains. This emphasizes the need for the implementation of better control measures to reduce the occurrence of antibiotic resistant S. aureus and of virulent S. aureus strains in recreational waters. In our study it was established that the potential of recreational waters to be reservoirs of S. aureus should not be taken for granted, and it is important that beach goers be educated about this organism as well as other related pathogens that could affect human health, especially immuno-compromised individuals. The community should be educated on antibiotic stewardship and the detrimental effects of antibiotics abuse.
- Full Text:
- Date Issued: 2017