Sample size assessments for thermal physiology studies: An R package and R Shiny application
- van Steenderen, Clarke J M, Sutton, Guy F, Owen, Candice A, Martin, Grant D, Coetzee, Julie A
- Authors: van Steenderen, Clarke J M , Sutton, Guy F , Owen, Candice A , Martin, Grant D , Coetzee, Julie A
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444455 , vital:74242 , https://doi.org/10.1111/phen.12416
- Description: Required sample sizes for a study need to be carefully assessed to account for logistics, cost, ethics and statistical rigour. For example, many studies have shown that methodological variations can impact the critical thermal limits (CTLs) recorded for a species, although studies on the impact of sample size on these measures are lacking. Here, we present ThermalSampleR; an R CRAN package and Shiny application that can assist researchers in determining when adequate sample sizes have been reached for their data. The method is particularly useful because it is not taxon specific. The Shiny application offers a user‐friendly interface equivalent to the package for users not familiar with R programming. ThermalSampleR is accompanied by an in‐built example dataset, which we use to guide the user through the workflow with a fully worked tutorial.
- Full Text:
- Date Issued: 2023
- Authors: van Steenderen, Clarke J M , Sutton, Guy F , Owen, Candice A , Martin, Grant D , Coetzee, Julie A
- Date: 2023
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/444455 , vital:74242 , https://doi.org/10.1111/phen.12416
- Description: Required sample sizes for a study need to be carefully assessed to account for logistics, cost, ethics and statistical rigour. For example, many studies have shown that methodological variations can impact the critical thermal limits (CTLs) recorded for a species, although studies on the impact of sample size on these measures are lacking. Here, we present ThermalSampleR; an R CRAN package and Shiny application that can assist researchers in determining when adequate sample sizes have been reached for their data. The method is particularly useful because it is not taxon specific. The Shiny application offers a user‐friendly interface equivalent to the package for users not familiar with R programming. ThermalSampleR is accompanied by an in‐built example dataset, which we use to guide the user through the workflow with a fully worked tutorial.
- Full Text:
- Date Issued: 2023
Biological control of South African plants that are invasive elsewhere in the world: A review of earlier and current programmes
- Olckers, Terence, Coetzee, Julie A, Egli, Daniella, Martin, Grant D, Paterson, Iain D, Sutton, Guy F, Wood, Alan R
- Authors: Olckers, Terence , Coetzee, Julie A , Egli, Daniella , Martin, Grant D , Paterson, Iain D , Sutton, Guy F , Wood, Alan R
- Date: 2021
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/414336 , vital:71137 , xlink:href="https://hdl.handle.net/10520/ejc-ento_v29_n3_a21"
- Description: South Africa supports a rich floral diversity, with 21 643 native plant taxa that include a high proportion (76.3%) of endemic species, and many of these favoured as ornamentals, both locally and globally. Consequently, South Africa has contributed substantially to global plant invasions, with 1093 native taxa (5% of all species) naturalized in other countries. At least 80 taxa are invasive in natural or semi-natural ecosystems elsewhere, while an additional 132 taxa are potentially invasive. Of the global naturalized flora, 8.2% originate from South Africa and largely comprise species of Poaceae, Asteraceae, Iridaceae and Fabaceae. Australia, in particular, but also Europe and North America are major recipients of South African weeds. However, few countries have targeted South African plants for biological control (biocontrol), with most efforts undertaken by Australia. Previous and current targets have involved only 26 species with 17 agents (15 insects, one mite and one rust fungus) of South African origin released on five target species in Australia and the United States of America. South Africa’s history of weed biocontrol, together with a large cohort of active scientists, is currently facilitating several internationally funded programmes targeting invasive plants of South African origin. In particular, the recently inaugurated Centre for Biological Control at Rhodes University and the University of KwaZulu-Natal have provided the impetus for novel efforts on five new target species and renewed efforts on four previously targeted species. In this contribution, we review the history of earlier biocontrol programmes against weeds of South African origin and the status of projects currently in progress in South Africa.
- Full Text:
- Date Issued: 2021
- Authors: Olckers, Terence , Coetzee, Julie A , Egli, Daniella , Martin, Grant D , Paterson, Iain D , Sutton, Guy F , Wood, Alan R
- Date: 2021
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/414336 , vital:71137 , xlink:href="https://hdl.handle.net/10520/ejc-ento_v29_n3_a21"
- Description: South Africa supports a rich floral diversity, with 21 643 native plant taxa that include a high proportion (76.3%) of endemic species, and many of these favoured as ornamentals, both locally and globally. Consequently, South Africa has contributed substantially to global plant invasions, with 1093 native taxa (5% of all species) naturalized in other countries. At least 80 taxa are invasive in natural or semi-natural ecosystems elsewhere, while an additional 132 taxa are potentially invasive. Of the global naturalized flora, 8.2% originate from South Africa and largely comprise species of Poaceae, Asteraceae, Iridaceae and Fabaceae. Australia, in particular, but also Europe and North America are major recipients of South African weeds. However, few countries have targeted South African plants for biological control (biocontrol), with most efforts undertaken by Australia. Previous and current targets have involved only 26 species with 17 agents (15 insects, one mite and one rust fungus) of South African origin released on five target species in Australia and the United States of America. South Africa’s history of weed biocontrol, together with a large cohort of active scientists, is currently facilitating several internationally funded programmes targeting invasive plants of South African origin. In particular, the recently inaugurated Centre for Biological Control at Rhodes University and the University of KwaZulu-Natal have provided the impetus for novel efforts on five new target species and renewed efforts on four previously targeted species. In this contribution, we review the history of earlier biocontrol programmes against weeds of South African origin and the status of projects currently in progress in South Africa.
- Full Text:
- Date Issued: 2021
Climate modelling suggests a review of the legal status of Brazilian pepper Schinus terebinthifolia in South Africa is required:
- Martin, Grant D, Magengelele, Nwabisa L, Paterson, Iain D, Sutton, Guy F
- Authors: Martin, Grant D , Magengelele, Nwabisa L , Paterson, Iain D , Sutton, Guy F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148606 , vital:38754 , https://doi.org/10.1016/j.sajb.2020.04.019
- Description: Brazilian pepper (Schinus terebinthifolia) is a tree native to subtropical South America that was introduced into South Africa in the early 1900s as an ornamental plant. The tree has since escaped cultivation and has invaded ruderal and pristine habitats along the eastern coast of South Africa. Brazilian Pepper is also one of the most problematic invasive alien plants in Florida, USA. We modelled the climatically suitable area for this species in South Africa using MaxEnt, with five distinct datasets: incorporating both the native and the invaded range of the species, as well as different backgrounds.
- Full Text:
- Date Issued: 2020
- Authors: Martin, Grant D , Magengelele, Nwabisa L , Paterson, Iain D , Sutton, Guy F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148606 , vital:38754 , https://doi.org/10.1016/j.sajb.2020.04.019
- Description: Brazilian pepper (Schinus terebinthifolia) is a tree native to subtropical South America that was introduced into South Africa in the early 1900s as an ornamental plant. The tree has since escaped cultivation and has invaded ruderal and pristine habitats along the eastern coast of South Africa. Brazilian Pepper is also one of the most problematic invasive alien plants in Florida, USA. We modelled the climatically suitable area for this species in South Africa using MaxEnt, with five distinct datasets: incorporating both the native and the invaded range of the species, as well as different backgrounds.
- Full Text:
- Date Issued: 2020
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