An investigation into the bacterial diversity associated with South African latrunculid sponges that produce bioactive secondary metabolites
- Authors: Walmsley, Tara Aisling
- Date: 2014
- Subjects: Sponges -- South Africa -- Algoa Bay , Sponges -- Classification , Metabolites -- South Africa -- Algoa Bay , Marine metabolites -- South Africa -- Algoa Bay , PQQ (Biochemistry) , Bacterial diversity
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4109 , http://hdl.handle.net/10962/d1012943
- Description: Algoa Bay Latrunculid sponges are well known for their production of cytotoxic pyrroloiminoquinones with speculation that these secondary metabolites may have a microbial origin. This study describes a thorough investigation into the bacterial community associated with Tsitsikamma favus, Tsitsikamma scurra a newly described Latrunculia sp. and a yellow encrusting sponge associated with T. scurra. Molecular and chemical characterisation were used in conjunction with traditional taxonomy in identification of the sponge specimens. The 28S rRNA and COX1 analysis confirmed the traditional taxonomy with T. favus and T. scurra being very closely related. Chemical analysis revealed that T. favus and T. scurra shared the discorhabdins 2,4-debromo-3-dihydrodiscorhabdin C, 7,8-dehydro-3-dihydrodiscorhabdin C and 14-bromo-1-hydroxy-discorhabdin V in common with each other and Tsitsikamma pedunculata indicating that these pyrroloiminoquinones are common to Tsitsikamma sponges in general. The bacterial community associated with T. favus was explored using 16S rRNA molecular techniques including DGGE, clonal libraries of full length 16S rRNA genes, as well as 454 pyrosequencing. DGGE analysis revealed that the bacterial community associated with T. favus appeared to be highly conserved, which was confirmed by both the clone library and 454 pyrosequencing, with the Betaproteobacteria as the most dominant class. Further exploration into T. favus, as well as T. scurra, Latrunculia sp. and the yellow encrusting sponge indicated that the bacterial populations associated with each of these sponge species were conserved and species specific. OTU analysis to the species level revealed that T. favus and T. scurra shared an abundant Spirochaete species in common while the most abundant species in the Latrunculia sp. and the yellow encrusting sponge belonged to the class Betaproteobacteria. The exclusivity of the tsitsikammamines to T. favus precipitated attempts to culture the T. favus associated bacteria, with a focus on the dominant betaproteobacterium as indicated by the 16S rRNA clone library. Actinobacteria associated with the Algoa Bay sponge specimens were also cultured and the actinobacterial isolates were sent for screening against Mycobacterium aurum with two Kocuria kristinae isolates and a Streptomyces albdioflavus isolate showing good antimycobacterial activity.
- Full Text:
- Date Issued: 2014
- Authors: Walmsley, Tara Aisling
- Date: 2014
- Subjects: Sponges -- South Africa -- Algoa Bay , Sponges -- Classification , Metabolites -- South Africa -- Algoa Bay , Marine metabolites -- South Africa -- Algoa Bay , PQQ (Biochemistry) , Bacterial diversity
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:4109 , http://hdl.handle.net/10962/d1012943
- Description: Algoa Bay Latrunculid sponges are well known for their production of cytotoxic pyrroloiminoquinones with speculation that these secondary metabolites may have a microbial origin. This study describes a thorough investigation into the bacterial community associated with Tsitsikamma favus, Tsitsikamma scurra a newly described Latrunculia sp. and a yellow encrusting sponge associated with T. scurra. Molecular and chemical characterisation were used in conjunction with traditional taxonomy in identification of the sponge specimens. The 28S rRNA and COX1 analysis confirmed the traditional taxonomy with T. favus and T. scurra being very closely related. Chemical analysis revealed that T. favus and T. scurra shared the discorhabdins 2,4-debromo-3-dihydrodiscorhabdin C, 7,8-dehydro-3-dihydrodiscorhabdin C and 14-bromo-1-hydroxy-discorhabdin V in common with each other and Tsitsikamma pedunculata indicating that these pyrroloiminoquinones are common to Tsitsikamma sponges in general. The bacterial community associated with T. favus was explored using 16S rRNA molecular techniques including DGGE, clonal libraries of full length 16S rRNA genes, as well as 454 pyrosequencing. DGGE analysis revealed that the bacterial community associated with T. favus appeared to be highly conserved, which was confirmed by both the clone library and 454 pyrosequencing, with the Betaproteobacteria as the most dominant class. Further exploration into T. favus, as well as T. scurra, Latrunculia sp. and the yellow encrusting sponge indicated that the bacterial populations associated with each of these sponge species were conserved and species specific. OTU analysis to the species level revealed that T. favus and T. scurra shared an abundant Spirochaete species in common while the most abundant species in the Latrunculia sp. and the yellow encrusting sponge belonged to the class Betaproteobacteria. The exclusivity of the tsitsikammamines to T. favus precipitated attempts to culture the T. favus associated bacteria, with a focus on the dominant betaproteobacterium as indicated by the 16S rRNA clone library. Actinobacteria associated with the Algoa Bay sponge specimens were also cultured and the actinobacterial isolates were sent for screening against Mycobacterium aurum with two Kocuria kristinae isolates and a Streptomyces albdioflavus isolate showing good antimycobacterial activity.
- Full Text:
- Date Issued: 2014
Curriculum outcomes, teaching practices and learner competencies in isiXhosa in three Grahamstown schools
- Authors: Fobe, Mila Pamella
- Date: 2014
- Subjects: Xhosa language -- Study and teaching (Primary) -- South Africa -- Grahamstown Xhosa language -- Study and teaching (Secondary) -- South Africa -- Grahamstown Language and education -- South Africa -- Grahamstown Curriculum planning Second language acquisition Public schools -- South Africa -- Grahamstown Language policy -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3630 , http://hdl.handle.net/10962/d1012072
- Description: This study looks at the curriculum outcomes, teaching practices and learner competencies in isiXhosa at three Eastern Cape schools and across three different grades, 7-9. It explores the link between language learning and teaching as well as the teaching strategies used within the classroom. In particular, the study seeks to analyse how isiXhosa is taught at three different levels of instruction, namely at Home Language (HL), First Additional Language (FAL) and Second Additional Language (SAL) levels. Qualitative methods were used, and the study took the form of interpretive case studies within the respective schools. The purpose of using multiple case studies was to investigate the reality within the three sites selected. The three schools had three extreme settings, in the sense that one of the schools is a rich isiXhosa environment and the other two schools are English environments. The tools used for data gathering were interviews, classroom observations, and an analysis of documents from the Department of Basic Education. Data was then presented and analysed in Chapter 4 and 5 against the backdrop of an extensive literature review in Chapter 2 as well as a detailed methodological approach as outlined in Chapter 3. One of the findings of this research indicates that in two of the schools the teaching culture is largely from a western perspective, whereas in one of the schools the learners are primarily isiXhosa speaking and teachers use a different linguistic approach to imparting knowledge. In the private and ex-Model C school it was found that a lack of exposure to isiXhosa is the primary cause of language problems for L2 learners. Secondly the L1 is not appropriately maintained or promoted in the school environment because it is presumed that learners are sufficiently exposed to their L1 at home. The research found therefore that in this particular schooling environment there is an inconsistency between the curricula that is taught in relation to the linguistic abilities of the learners, many of whom are mother tongue speakers of isiXhosa. Furthermore and more generally, it was found that teachers are still not well informed concerning South Africa’s Language-in-Education-Policy and there is a need for more inservice training that will focus on the nature of additional language acquisition in order to address the challenges of teaching these languages. The thesis concludes that extensive work needs to be done in order to reposition the teaching of isiXhosa at all three levels, but particularly at FAL level. This research shows that there is a disjuncture between the proposed curriculum/learning outcomes and the standards or levels achieved by the learners, more especially at FAL and SAL where oral proficiency in isiXhosa remains a challenge. Specific recommendations are contained in the final chapter of the thesis which also makes reference to the draft policy of the Ministry of Basic Education regarding the incremental introduction of the teaching of African languages from 2014 onwards. This thesis also makes takes as a point of departure the importance of multilingualism in a multicultural society such as South Africa where language is suggested as a strong factor in the fostering of social cohesion. It is for this reason that the thesis argues that the expert teaching of African languages, in this case isiXhosa, at both mother tongue and second language levels is of fundamental importance to the future of South African society.
- Full Text:
- Date Issued: 2014
- Authors: Fobe, Mila Pamella
- Date: 2014
- Subjects: Xhosa language -- Study and teaching (Primary) -- South Africa -- Grahamstown Xhosa language -- Study and teaching (Secondary) -- South Africa -- Grahamstown Language and education -- South Africa -- Grahamstown Curriculum planning Second language acquisition Public schools -- South Africa -- Grahamstown Language policy -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:3630 , http://hdl.handle.net/10962/d1012072
- Description: This study looks at the curriculum outcomes, teaching practices and learner competencies in isiXhosa at three Eastern Cape schools and across three different grades, 7-9. It explores the link between language learning and teaching as well as the teaching strategies used within the classroom. In particular, the study seeks to analyse how isiXhosa is taught at three different levels of instruction, namely at Home Language (HL), First Additional Language (FAL) and Second Additional Language (SAL) levels. Qualitative methods were used, and the study took the form of interpretive case studies within the respective schools. The purpose of using multiple case studies was to investigate the reality within the three sites selected. The three schools had three extreme settings, in the sense that one of the schools is a rich isiXhosa environment and the other two schools are English environments. The tools used for data gathering were interviews, classroom observations, and an analysis of documents from the Department of Basic Education. Data was then presented and analysed in Chapter 4 and 5 against the backdrop of an extensive literature review in Chapter 2 as well as a detailed methodological approach as outlined in Chapter 3. One of the findings of this research indicates that in two of the schools the teaching culture is largely from a western perspective, whereas in one of the schools the learners are primarily isiXhosa speaking and teachers use a different linguistic approach to imparting knowledge. In the private and ex-Model C school it was found that a lack of exposure to isiXhosa is the primary cause of language problems for L2 learners. Secondly the L1 is not appropriately maintained or promoted in the school environment because it is presumed that learners are sufficiently exposed to their L1 at home. The research found therefore that in this particular schooling environment there is an inconsistency between the curricula that is taught in relation to the linguistic abilities of the learners, many of whom are mother tongue speakers of isiXhosa. Furthermore and more generally, it was found that teachers are still not well informed concerning South Africa’s Language-in-Education-Policy and there is a need for more inservice training that will focus on the nature of additional language acquisition in order to address the challenges of teaching these languages. The thesis concludes that extensive work needs to be done in order to reposition the teaching of isiXhosa at all three levels, but particularly at FAL level. This research shows that there is a disjuncture between the proposed curriculum/learning outcomes and the standards or levels achieved by the learners, more especially at FAL and SAL where oral proficiency in isiXhosa remains a challenge. Specific recommendations are contained in the final chapter of the thesis which also makes reference to the draft policy of the Ministry of Basic Education regarding the incremental introduction of the teaching of African languages from 2014 onwards. This thesis also makes takes as a point of departure the importance of multilingualism in a multicultural society such as South Africa where language is suggested as a strong factor in the fostering of social cohesion. It is for this reason that the thesis argues that the expert teaching of African languages, in this case isiXhosa, at both mother tongue and second language levels is of fundamental importance to the future of South African society.
- Full Text:
- Date Issued: 2014
Fishing for resilience : herbivore and algal dynamics on coral reefs in Kenya.
- Authors: Humphries, Austin Turner
- Date: 2014
- Subjects: Coral reef conservation -- Kenya , Coral reef ecology -- Kenya , Coral reef biology -- Kenya , Coral reef fishes -- Kenya , Herbivores -- Kenya , Algae -- Control -- Kenya , Fishery management -- Kenya
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5877 , http://hdl.handle.net/10962/d1013147
- Description: Herbivory is a key process that mediates the abundance of primary producers and community composition in both terrestrial and aquatic ecosystems. On tropical coral reefs, changes in herbivory are often related to phase shifts between coral-dominance and dominance by seaweeds, or foliose macroalgae. Resilience or capacity to resist and reverse such phase shifts is, therefore, viewed as a critical function on coral reefs. This thesis used grazer exclusion and assay experiments at six sites within three different fisheries management regimes in Kenya to identify the impacts of herbivores (sea urchins and fishes) on algal dynamics in the context of coral reef resilience. First, I examined the grazing rates necessary to prevent phase shifts by quantifying consumption and algal production. Here, I found that, over a 390-day experiment, at least 50 percent of algal production must be consumed to avoid accumulation of algal biomass. Using video observations, I also showed that scraping parrotfishes remove more algae (per unit of fish biomass) than previously assumed, and that sea urchins, if released from predation, have similar impacts to fishes. Then I focused on algal succession, and found that sea urchins and fishes have different effects that are mediated by their abundances and species composition. Where sea urchins were less abundant and parrotfishes absent (e.g. young fisheries closures), progression of algae from turfs to early and then late successional macroalgae occurred rapidly and within 100 days. I then turned my focus to the removal of already established macroalgae (grown for > 1 yr in the absence of herbivores) and showed that sea urchins and browsing fishes were able to remove significant amounts of macroalgae where either herbivore was abundant. However, using multiple-choice selectivity assays and in situ video recordings, I found that browsing fishes fed very selectively with low overlap in diet among species, leading to low functional redundancy within a high diversity system. Finally, using long-term survey data (from 28 sites) to build a 43-year chronosequence, I showed that it is possible that the effects of herbivory will not be constant across transitions from open fishing to fishery closures through non-linear grazing intensity. Therefore, increases in herbivory within fisheries closures may not be immediate and may allow a window of opportunity for algae to go from turf to unpalatable macroalgae until scraping and browsing fishes fully recover from fishing (~ 20 years). The findings in this thesis are novel and raise concern over the potential implications of the slow recovery of parrotfishes or, given lower than expected functional redundancy in grazing effects, the absence of even one browsing fish species in fisheries closures. Overall, this thesis highlights the importance of herbivore community dynamics in mediating interactions among algae, and provides new insights for conservation and management actions that attempt to bolster the resilience of coral reefs.
- Full Text:
- Date Issued: 2014
- Authors: Humphries, Austin Turner
- Date: 2014
- Subjects: Coral reef conservation -- Kenya , Coral reef ecology -- Kenya , Coral reef biology -- Kenya , Coral reef fishes -- Kenya , Herbivores -- Kenya , Algae -- Control -- Kenya , Fishery management -- Kenya
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5877 , http://hdl.handle.net/10962/d1013147
- Description: Herbivory is a key process that mediates the abundance of primary producers and community composition in both terrestrial and aquatic ecosystems. On tropical coral reefs, changes in herbivory are often related to phase shifts between coral-dominance and dominance by seaweeds, or foliose macroalgae. Resilience or capacity to resist and reverse such phase shifts is, therefore, viewed as a critical function on coral reefs. This thesis used grazer exclusion and assay experiments at six sites within three different fisheries management regimes in Kenya to identify the impacts of herbivores (sea urchins and fishes) on algal dynamics in the context of coral reef resilience. First, I examined the grazing rates necessary to prevent phase shifts by quantifying consumption and algal production. Here, I found that, over a 390-day experiment, at least 50 percent of algal production must be consumed to avoid accumulation of algal biomass. Using video observations, I also showed that scraping parrotfishes remove more algae (per unit of fish biomass) than previously assumed, and that sea urchins, if released from predation, have similar impacts to fishes. Then I focused on algal succession, and found that sea urchins and fishes have different effects that are mediated by their abundances and species composition. Where sea urchins were less abundant and parrotfishes absent (e.g. young fisheries closures), progression of algae from turfs to early and then late successional macroalgae occurred rapidly and within 100 days. I then turned my focus to the removal of already established macroalgae (grown for > 1 yr in the absence of herbivores) and showed that sea urchins and browsing fishes were able to remove significant amounts of macroalgae where either herbivore was abundant. However, using multiple-choice selectivity assays and in situ video recordings, I found that browsing fishes fed very selectively with low overlap in diet among species, leading to low functional redundancy within a high diversity system. Finally, using long-term survey data (from 28 sites) to build a 43-year chronosequence, I showed that it is possible that the effects of herbivory will not be constant across transitions from open fishing to fishery closures through non-linear grazing intensity. Therefore, increases in herbivory within fisheries closures may not be immediate and may allow a window of opportunity for algae to go from turf to unpalatable macroalgae until scraping and browsing fishes fully recover from fishing (~ 20 years). The findings in this thesis are novel and raise concern over the potential implications of the slow recovery of parrotfishes or, given lower than expected functional redundancy in grazing effects, the absence of even one browsing fish species in fisheries closures. Overall, this thesis highlights the importance of herbivore community dynamics in mediating interactions among algae, and provides new insights for conservation and management actions that attempt to bolster the resilience of coral reefs.
- Full Text:
- Date Issued: 2014
Biology, stock assessment and management of the panga Pterogymnus laniarius on the Agulhas Bank, South Africa
- Authors: Booth, Anthony John
- Date: 1998
- Subjects: Fish stock assessment -- South Africa Bycatches (Fisheries) -- South Africa Pterogymnus laniarius Fishery management -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5242 , http://hdl.handle.net/10962/d1005085
- Description: The panga, Pterogymnus laniarius (Cuvier, 1830), is a South African endemic sparid fish species. On the Agulhas Bank, South Africa it is a commercially important species, caught as bycatch in the hake directed trawlfisheries and targeted by offshore hook-and-linefishers. Recently there has been considerable interest shown in directing further fishing effort on this species. The lack of a suitable management procedure for teleost bycatch in South Africa was the principal reason for undertaking this study. This thesis investigates aspects the panga's life history, particularly those aspects that have management implications. A full knowledge of this species' distribution and abundance was necessary as this could highlight the existence of any nursery areas, ontogenetic migratory patterns and areas of high spawner biomass. The derived parameter estimates were then included as inputs into stock assessment models to determine the status and productivity of the resource. Growth studies based on sectioned sagittal otoliths revealed that the panga was a relatively slow growing fish with ages of 16 years being recorded. Growth was best described by the von Bertalanffy growth model as Lt=379.4(1-e⁻°·¹³⁽t ⁺ ¹·⁷⁸⁾). Total, natural and fishing mortalities were estimated at 0.36 year⁻¹, 0.28 year⁻¹ and 0.08 year ⁻¹, respectively. Detailed histological examination of the gonads revealed that panga is a late gonochorist, males and females maturing after a non-functional intersexual stage. Females mature at approximately 200 mm fork length or 4 years of age. Reproduction occurs throughout the year although there is a slight peak in winter. Gametogenesis was found to be similar to that of other sparid fishes and marine teleosts in general. The panga feeds predominantly on crustaceans with a distinct ontogenetic shift in feeding habits. Juvenile fish feed predominantly in the water column on mysids after which they move to the benthos. Subadult fish feed principally on ophiuroids and amphipods. Adult fish remain on or near the benthos, feeding predominantly on crabs, and on polychaetes, ophiuroids and fishes to a lesser extent. Several aspects of the panga's biology contribute to its ability to sustain a higher fishing pressure than other sympatric sparid species. These include its late gonochoristic reproductive style, protracted spawning season, maturation before recruitment and preference for soft substratum prey that enables it to utilise large areas of the Agulhas Bank. The panga's longevity, slow growth and low natural mortality rate, however, mitigated against these factors and were considered in the stock assessments. A heterogeneous Geographical Information System (GIS) was developed to analyse the distribution and abundance patterns of the panga. The GIS developed in this thesis makes a significant contribution towards the development of a South African Fisheries Information System to analyse and manage fish resources in general and bycatch resources in particular. The GIS developed in this study combines statistical Generalized Additive Modelling and standard GIS methods. Analysis of fourteen biannual fishery independent biomass surveys, disaggregated by life history stage, revealed that a nursery area for immature fish (<23 cm TL or < 4 years of age) exists on the Central Agulhas Bank. After sexual maturation, approximately 40% of the biomass migrated eastwards, colonising large areas of the Eastern Agulhas Bank.ilie location of the nursery area appears to be a result of the pelagic eggs and larvae being advected towards the coast in an anti-cyclonic gyre, stemming off the Agulhas current and later deposited over the Central Agulhas Bank. The weak bottom currents on the Central Agulhas Bank prevented juvenile loss to the Benguela system. The eurytopy of adult fish to various physical variables such as temperature, dissolved oxygen and stronger currents enabled it to reduce conspecific competition and migrate eastwards with distribution primarily determined by depth. Relative biomass estimates revealed a gradual increase in biomass of 5.5% per annum between 1988 and 1995. Predictions from yield-per-recruit, biomass-per-recruit and spawner biomass-per-recruit analyses showed that there was scope for further exploitation. A FSB₅₀ fishing strategy was considered to be the most appropriate fishing strategy as it did not reduce the spawner biomass-per-recruit to less than 50% of unexploited levels. Effort control was considered the most effective management tool as the age-at-50%-selectivity occurred after age-at-sexual maturity and releasing undersized fish was undesirable due to heavy mortalities resulting from severe barotrauma. The panga resource was also assessed using an age-structured production model. The values for the free parameters of the model were estimated using biomass indices derived from fishery-independent trawl surveys. Although the data were fairly uninformative about the productivity of the resource, the results indicated robustly, that the population has recovered from low levels in the mid-1970's and could sustain higher levels of fishing intensity. Risk analysis calculations were used to assess the sustainability of different catch scenarios. The level of sustainable catch was found to be sensitive to the selectivity pattern of the gear utilised. Both stock assessment methods used in this study to investigate the status of the panga resource showed that the resource could theoretically sustain higher catches. It was found that although the stock could be harvested using available fishing methods, the sympatry of this species with other commercial species was of concern as the latter would form a significant bycatch in a panga directed fishery. The failure of current harvesting methods to address the bycatch problem highlights the management problem in South Africa and stresses the need for creativity by both scientists and fishers in designing new and improved methods for selectively harvesting bycatch fish resources. Considering that no suitable method is currently available to fish the panga stock in a directed fishery the fishery should be managed as status quo until some suitable and efficient gear is developed.
- Full Text:
- Date Issued: 1998
- Authors: Booth, Anthony John
- Date: 1998
- Subjects: Fish stock assessment -- South Africa Bycatches (Fisheries) -- South Africa Pterogymnus laniarius Fishery management -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5242 , http://hdl.handle.net/10962/d1005085
- Description: The panga, Pterogymnus laniarius (Cuvier, 1830), is a South African endemic sparid fish species. On the Agulhas Bank, South Africa it is a commercially important species, caught as bycatch in the hake directed trawlfisheries and targeted by offshore hook-and-linefishers. Recently there has been considerable interest shown in directing further fishing effort on this species. The lack of a suitable management procedure for teleost bycatch in South Africa was the principal reason for undertaking this study. This thesis investigates aspects the panga's life history, particularly those aspects that have management implications. A full knowledge of this species' distribution and abundance was necessary as this could highlight the existence of any nursery areas, ontogenetic migratory patterns and areas of high spawner biomass. The derived parameter estimates were then included as inputs into stock assessment models to determine the status and productivity of the resource. Growth studies based on sectioned sagittal otoliths revealed that the panga was a relatively slow growing fish with ages of 16 years being recorded. Growth was best described by the von Bertalanffy growth model as Lt=379.4(1-e⁻°·¹³⁽t ⁺ ¹·⁷⁸⁾). Total, natural and fishing mortalities were estimated at 0.36 year⁻¹, 0.28 year⁻¹ and 0.08 year ⁻¹, respectively. Detailed histological examination of the gonads revealed that panga is a late gonochorist, males and females maturing after a non-functional intersexual stage. Females mature at approximately 200 mm fork length or 4 years of age. Reproduction occurs throughout the year although there is a slight peak in winter. Gametogenesis was found to be similar to that of other sparid fishes and marine teleosts in general. The panga feeds predominantly on crustaceans with a distinct ontogenetic shift in feeding habits. Juvenile fish feed predominantly in the water column on mysids after which they move to the benthos. Subadult fish feed principally on ophiuroids and amphipods. Adult fish remain on or near the benthos, feeding predominantly on crabs, and on polychaetes, ophiuroids and fishes to a lesser extent. Several aspects of the panga's biology contribute to its ability to sustain a higher fishing pressure than other sympatric sparid species. These include its late gonochoristic reproductive style, protracted spawning season, maturation before recruitment and preference for soft substratum prey that enables it to utilise large areas of the Agulhas Bank. The panga's longevity, slow growth and low natural mortality rate, however, mitigated against these factors and were considered in the stock assessments. A heterogeneous Geographical Information System (GIS) was developed to analyse the distribution and abundance patterns of the panga. The GIS developed in this thesis makes a significant contribution towards the development of a South African Fisheries Information System to analyse and manage fish resources in general and bycatch resources in particular. The GIS developed in this study combines statistical Generalized Additive Modelling and standard GIS methods. Analysis of fourteen biannual fishery independent biomass surveys, disaggregated by life history stage, revealed that a nursery area for immature fish (<23 cm TL or < 4 years of age) exists on the Central Agulhas Bank. After sexual maturation, approximately 40% of the biomass migrated eastwards, colonising large areas of the Eastern Agulhas Bank.ilie location of the nursery area appears to be a result of the pelagic eggs and larvae being advected towards the coast in an anti-cyclonic gyre, stemming off the Agulhas current and later deposited over the Central Agulhas Bank. The weak bottom currents on the Central Agulhas Bank prevented juvenile loss to the Benguela system. The eurytopy of adult fish to various physical variables such as temperature, dissolved oxygen and stronger currents enabled it to reduce conspecific competition and migrate eastwards with distribution primarily determined by depth. Relative biomass estimates revealed a gradual increase in biomass of 5.5% per annum between 1988 and 1995. Predictions from yield-per-recruit, biomass-per-recruit and spawner biomass-per-recruit analyses showed that there was scope for further exploitation. A FSB₅₀ fishing strategy was considered to be the most appropriate fishing strategy as it did not reduce the spawner biomass-per-recruit to less than 50% of unexploited levels. Effort control was considered the most effective management tool as the age-at-50%-selectivity occurred after age-at-sexual maturity and releasing undersized fish was undesirable due to heavy mortalities resulting from severe barotrauma. The panga resource was also assessed using an age-structured production model. The values for the free parameters of the model were estimated using biomass indices derived from fishery-independent trawl surveys. Although the data were fairly uninformative about the productivity of the resource, the results indicated robustly, that the population has recovered from low levels in the mid-1970's and could sustain higher levels of fishing intensity. Risk analysis calculations were used to assess the sustainability of different catch scenarios. The level of sustainable catch was found to be sensitive to the selectivity pattern of the gear utilised. Both stock assessment methods used in this study to investigate the status of the panga resource showed that the resource could theoretically sustain higher catches. It was found that although the stock could be harvested using available fishing methods, the sympatry of this species with other commercial species was of concern as the latter would form a significant bycatch in a panga directed fishery. The failure of current harvesting methods to address the bycatch problem highlights the management problem in South Africa and stresses the need for creativity by both scientists and fishers in designing new and improved methods for selectively harvesting bycatch fish resources. Considering that no suitable method is currently available to fish the panga stock in a directed fishery the fishery should be managed as status quo until some suitable and efficient gear is developed.
- Full Text:
- Date Issued: 1998
Aspects of the symplectic and metric geometry of classical and quantum physics
- Authors: Russell, Neil Eric
- Date: 1993
- Subjects: Symplectic manifolds Geometry, Differential Geometric quantization Quantum theory Clifford algebras
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5452 , http://hdl.handle.net/10962/d1005237
- Description: I investigate some algebras and calculi naturally associated with the symplectic and metric Clifford algebras. In particular, I reformulate the well known Lepage decomposition for the symplectic exterior algebra in geometrical form and present some new results relating to the simple subspaces of the decomposition. I then present an analogous decomposition for the symmetric exterior algebra with a metric. Finally, I extend this symmetric exterior algebra into a new calculus for the symmetric differential forms on a pseudo-Riemannian manifold. The importance of this calculus lies in its potential for the description of bosonic systems in Quantum Theory.
- Full Text:
- Date Issued: 1993
- Authors: Russell, Neil Eric
- Date: 1993
- Subjects: Symplectic manifolds Geometry, Differential Geometric quantization Quantum theory Clifford algebras
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5452 , http://hdl.handle.net/10962/d1005237
- Description: I investigate some algebras and calculi naturally associated with the symplectic and metric Clifford algebras. In particular, I reformulate the well known Lepage decomposition for the symplectic exterior algebra in geometrical form and present some new results relating to the simple subspaces of the decomposition. I then present an analogous decomposition for the symmetric exterior algebra with a metric. Finally, I extend this symmetric exterior algebra into a new calculus for the symmetric differential forms on a pseudo-Riemannian manifold. The importance of this calculus lies in its potential for the description of bosonic systems in Quantum Theory.
- Full Text:
- Date Issued: 1993
Environmental physiology of the intertidal limpets Patella (Prosobranchia) and Siphonaria (Pulmonata)
- Authors: Marshall, David John
- Date: 1992
- Subjects: Prosobranchia Pulmonata Patellidae Siphonaria Limpets
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5686 , http://hdl.handle.net/10962/d1005372
- Description: Physiological response to environmental change is examined in species of the intertidal limpets, Patella (Prosobranchia) and Siphonaria (Pulmonata). Characteristics of heart beat were determined using impedance pneumography and these are described. Heart rate of P. granularis is related to temperature and body size, and cardiac arrest in this limpet is apparently stress-related. Siphonaria oculus may exhibit a temperature-independent, extreme, and often prolonged bradycardia (<10 beats/min). When measured shortly after aerial exposure, heart rate and oxygen consumption of the above limpet species are closely correlated. The relationships of aerial oxygen consumption with body weight and ambient temperature were determined for the above high shore species of limpet. Both have low aerial rates of oxygen consumption relative to low shore limpet species, and their QlO values decrease with increasing temperature. Diel field recordings of heart rate of S. oculus, taken during summer and winter, suggest absence of temperature acclimation, and this was also shown for oxygen consumption at high aerial temperatures (30°C) in laboratory experiments. Oxygen consumption of P. granularis is partially temperature compensated temperature acclimation). In air, even though S. oculus loses water faster, it shows greater tolerance of water loss and survives longer than P. granularis. Prolonged aerial exposure of S. oculus leads to depression of heart rate and of V02 (down to 18% of the pre-exposure rate), responses interpreted as representing adaptive metabolic rate depression. In P. granularis aerial heart rate remains constant and V02 never falls below IX 38% of pre-exposure rate. This reduction in V02 in air is considered as being stress-related, resulting from impairment of oxygen uptake. In declining oxygen tension S. capensis shows a better capacity for oxyregulation than P. granularis. On exposure to hypoxia, sand-inundation and hyposalinity, S. capensis may show typical bradycardia ( <10 beats/min), suggesting depression of aerobic metabolism, and on return to pre-exposure conditions there is no overshoot of heart rate, suggesting absence of oxygen debt. The effect of hypoxia, sand-inundation and hyposalinity on heart rate of P. granularis is variable; this becomes depressed and is often interspersed with extended cardiac arrest. When conditions are normalized, this species exhibits a clear overshoot of heart rate. The significance of differences in physiological response between patellid and siphonariid limpets is discussed with regard to their habitat segregation, particularly in the upper-shore zone (open rock and tidal pools) and sand-inundated rock substrata, where only siphonariid limpets may be found. While not previously characterized in marine gastropods, metabolic rate depression by Siphonaria, through facilitating isolation and conserving food reserves, is suggested as a key factor determining their distribution in physico-chemically more extreme and variable intertidal habitats.
- Full Text:
- Date Issued: 1992
- Authors: Marshall, David John
- Date: 1992
- Subjects: Prosobranchia Pulmonata Patellidae Siphonaria Limpets
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5686 , http://hdl.handle.net/10962/d1005372
- Description: Physiological response to environmental change is examined in species of the intertidal limpets, Patella (Prosobranchia) and Siphonaria (Pulmonata). Characteristics of heart beat were determined using impedance pneumography and these are described. Heart rate of P. granularis is related to temperature and body size, and cardiac arrest in this limpet is apparently stress-related. Siphonaria oculus may exhibit a temperature-independent, extreme, and often prolonged bradycardia (<10 beats/min). When measured shortly after aerial exposure, heart rate and oxygen consumption of the above limpet species are closely correlated. The relationships of aerial oxygen consumption with body weight and ambient temperature were determined for the above high shore species of limpet. Both have low aerial rates of oxygen consumption relative to low shore limpet species, and their QlO values decrease with increasing temperature. Diel field recordings of heart rate of S. oculus, taken during summer and winter, suggest absence of temperature acclimation, and this was also shown for oxygen consumption at high aerial temperatures (30°C) in laboratory experiments. Oxygen consumption of P. granularis is partially temperature compensated temperature acclimation). In air, even though S. oculus loses water faster, it shows greater tolerance of water loss and survives longer than P. granularis. Prolonged aerial exposure of S. oculus leads to depression of heart rate and of V02 (down to 18% of the pre-exposure rate), responses interpreted as representing adaptive metabolic rate depression. In P. granularis aerial heart rate remains constant and V02 never falls below IX 38% of pre-exposure rate. This reduction in V02 in air is considered as being stress-related, resulting from impairment of oxygen uptake. In declining oxygen tension S. capensis shows a better capacity for oxyregulation than P. granularis. On exposure to hypoxia, sand-inundation and hyposalinity, S. capensis may show typical bradycardia ( <10 beats/min), suggesting depression of aerobic metabolism, and on return to pre-exposure conditions there is no overshoot of heart rate, suggesting absence of oxygen debt. The effect of hypoxia, sand-inundation and hyposalinity on heart rate of P. granularis is variable; this becomes depressed and is often interspersed with extended cardiac arrest. When conditions are normalized, this species exhibits a clear overshoot of heart rate. The significance of differences in physiological response between patellid and siphonariid limpets is discussed with regard to their habitat segregation, particularly in the upper-shore zone (open rock and tidal pools) and sand-inundated rock substrata, where only siphonariid limpets may be found. While not previously characterized in marine gastropods, metabolic rate depression by Siphonaria, through facilitating isolation and conserving food reserves, is suggested as a key factor determining their distribution in physico-chemically more extreme and variable intertidal habitats.
- Full Text:
- Date Issued: 1992
An ecophysiological study of the effects of changes in salinity and temperature on the distribution of Macrobrachium Petersi (Hilgendorf) in the Keiskamma river and estuary
- Read, Graeme Hamilton Leonard
- Authors: Read, Graeme Hamilton Leonard
- Date: 1982
- Subjects: Macrobrachium -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5804 , http://hdl.handle.net/10962/d1006304
- Description: Summary: The distribution of adult, juvenile, post larval and larval Macrobrachium petersi (Hilgendorf) was studied in relation to temperature and salinity in the Keiskamma river and estuary from May 1979 to May 1981. M. petersi is a subtropical species, which confined activity of all stages in the field to the summer months. Variable freshwater discharge and tidal effects determined the salinity and temperature profiles in the middle and upper reaches of the Keiskamma estuary. Thus, a dry 1979/80 summer and a wet 1980/81 summer markedly influenced the abundance and distribution of adult M. petersi in the river and estuary respectively. Adult M. petersi migrate to the estuary under flooding conditions and upstream in response to elevated salinities. Although M. petersi has nine larval stages only a preponderance of stage I were caught in the field. These portray a distinct nocturnal and diurnal distribution pattern which is influenced by salinity, especially under stratified conditions. After flooding the larvae show an affinity for salt front regions and reach these by remaining in the water column on the ebbing tide. A substantial drop in abundance downstream from the salt front suggests that the larvae loose their planktonic phase which is an effective retention mechanism, and confines larval development to the middle and upper reaches of the estuary. Post larvae were caught towards the end of the 1981 breeding season which indicates that complete larval development takes place in the estuary. A post larval migration to freshwater, which reaches a peak in February and March, was monitored. Thus both the freshwater and estuarine environments form an inseparable link in the life cycle of M. petersi. The distribution of stage I larvae in the Keiskamma estuary suggested that salinity played a role in development. The fact that other larval stages were not found emphasised the necessity for a quantitative laboratory investigation to determine the importance of salinity in the developmental history of M. petersi larvae and post larvae. However, the modifying influence of temperature could not be ignored so a multivariable approach was adopted. This, together with a surface response technique, aided the interpretation of the effect of a variety of combinations of salinity and temperature on ecdysis to stage II, larval survival and requirements for metamorphosis to post larvae. It was estimated that the minimum salinity requirement for complete larval development, within a temperature range from 18 to 30⁰C was 8%₀, although ecdysis to stage II and metamorphosis to post larvae could occur in salinities less than this value. Despite the euryhalinity of the larvae, the behaviour of adult M. petersi to an increase in salinity and the affinity of stage I larvae to salt front regions restricted development to the upper reaches of the estuary. This is discussed as an adaptation which not only ensures retention within the estuary but favours recruitment to the adult population in freshwater. The osmoregulatory patterns of larval, post larval, juvenile and adult M. petersi correlated with their distribution. These were approximated by a cubic polynomial which enabled the different patterns to be compared. The larval stages investigated (I, II, V & IX) displayed a remarkable capacity to regulate which was strongest in stage I as these could regulate in both freshwater and 35%₀. The ability to regulate in freshwater was lost hereafter but regained in the post larvae, which also regulated in 35%₀. Juveniles (caught at the ebb and flow) displayed a similar regulatory pattern to the adults and "hyposmoconformed" in salinities beyond the isosmotic point as the need to regulate in 35%₀ was no longer necessary. The osmoregulatory capacity of M. petersi larvae in relation to other decapod larvae is discussed. Marine transport of the euryhaline larval and post larval stages accounts for the distribution of M. petersi along the South African coastline. However, south of 31°S latitude the sea-surface temperature decreases abruptly. This region coincides with the southern limit of the distribution of M. petersi. Although larval M. petersi can tolerate high salinity (35%₀) in combination with low temperature, the post larvae cannot, which is likely to account for their restricted southern distribution. The genus Macrobrachium are in the process of invading freshwater. The possible course that this might have taken has been discussed in the light of available evidence as well as the findings of this study.
- Full Text:
- Date Issued: 1982
- Authors: Read, Graeme Hamilton Leonard
- Date: 1982
- Subjects: Macrobrachium -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5804 , http://hdl.handle.net/10962/d1006304
- Description: Summary: The distribution of adult, juvenile, post larval and larval Macrobrachium petersi (Hilgendorf) was studied in relation to temperature and salinity in the Keiskamma river and estuary from May 1979 to May 1981. M. petersi is a subtropical species, which confined activity of all stages in the field to the summer months. Variable freshwater discharge and tidal effects determined the salinity and temperature profiles in the middle and upper reaches of the Keiskamma estuary. Thus, a dry 1979/80 summer and a wet 1980/81 summer markedly influenced the abundance and distribution of adult M. petersi in the river and estuary respectively. Adult M. petersi migrate to the estuary under flooding conditions and upstream in response to elevated salinities. Although M. petersi has nine larval stages only a preponderance of stage I were caught in the field. These portray a distinct nocturnal and diurnal distribution pattern which is influenced by salinity, especially under stratified conditions. After flooding the larvae show an affinity for salt front regions and reach these by remaining in the water column on the ebbing tide. A substantial drop in abundance downstream from the salt front suggests that the larvae loose their planktonic phase which is an effective retention mechanism, and confines larval development to the middle and upper reaches of the estuary. Post larvae were caught towards the end of the 1981 breeding season which indicates that complete larval development takes place in the estuary. A post larval migration to freshwater, which reaches a peak in February and March, was monitored. Thus both the freshwater and estuarine environments form an inseparable link in the life cycle of M. petersi. The distribution of stage I larvae in the Keiskamma estuary suggested that salinity played a role in development. The fact that other larval stages were not found emphasised the necessity for a quantitative laboratory investigation to determine the importance of salinity in the developmental history of M. petersi larvae and post larvae. However, the modifying influence of temperature could not be ignored so a multivariable approach was adopted. This, together with a surface response technique, aided the interpretation of the effect of a variety of combinations of salinity and temperature on ecdysis to stage II, larval survival and requirements for metamorphosis to post larvae. It was estimated that the minimum salinity requirement for complete larval development, within a temperature range from 18 to 30⁰C was 8%₀, although ecdysis to stage II and metamorphosis to post larvae could occur in salinities less than this value. Despite the euryhalinity of the larvae, the behaviour of adult M. petersi to an increase in salinity and the affinity of stage I larvae to salt front regions restricted development to the upper reaches of the estuary. This is discussed as an adaptation which not only ensures retention within the estuary but favours recruitment to the adult population in freshwater. The osmoregulatory patterns of larval, post larval, juvenile and adult M. petersi correlated with their distribution. These were approximated by a cubic polynomial which enabled the different patterns to be compared. The larval stages investigated (I, II, V & IX) displayed a remarkable capacity to regulate which was strongest in stage I as these could regulate in both freshwater and 35%₀. The ability to regulate in freshwater was lost hereafter but regained in the post larvae, which also regulated in 35%₀. Juveniles (caught at the ebb and flow) displayed a similar regulatory pattern to the adults and "hyposmoconformed" in salinities beyond the isosmotic point as the need to regulate in 35%₀ was no longer necessary. The osmoregulatory capacity of M. petersi larvae in relation to other decapod larvae is discussed. Marine transport of the euryhaline larval and post larval stages accounts for the distribution of M. petersi along the South African coastline. However, south of 31°S latitude the sea-surface temperature decreases abruptly. This region coincides with the southern limit of the distribution of M. petersi. Although larval M. petersi can tolerate high salinity (35%₀) in combination with low temperature, the post larvae cannot, which is likely to account for their restricted southern distribution. The genus Macrobrachium are in the process of invading freshwater. The possible course that this might have taken has been discussed in the light of available evidence as well as the findings of this study.
- Full Text:
- Date Issued: 1982
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