Habitat use by Juvenile coastal fish in subtidal vegetated habitats of Algoa Bay;s shallow water seascape
- Authors: Mkhize,Thembani
- Date: 2022-12
- Subjects: Sailing ships -- South Africa -- Algoa Bay --History , Marine fishes -- Algoa Bay -- South Africa , Fish improvement habitat
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59788 , vital:62429
- Description: Structurally complex habitats such as seagrass, mangroves, and seaweed are important as nurseries in estuaries and nearshore marine environments. While numerous studies have focussed on structurally complex vegetated habitats in estuaries, few studies have focussed on vegetated nursery habitats (particularly seaweed) in coastal areas and their importance. The main aim of this project is to examine the nature of shallow water vegetated habitat (Zostera capensis seagrass and Plocamium corallorhiza macroalga) usage by juvenile fish in the Algoa Bay shallow water seascape (Swartkops Estuary and Flat Rocks nearshore subtidal reef). This aim was achieved by quantifying and comparing complexity of these two habitat-forming species, and the fish assemblages (relative abundance, richness, size structure and behaviour) across the two habitats. To measure and compare complexity of Z. capensis and P. corallorhiza, canopy height, density and leaf/blade width were sampled. In addition to these structural complexity indices, Fractal D (dimensionless complexity indices) was also quantified using Image software. Zostera capensis (1553.3 Indiv/m2 ) had a slightly higher mean density compared to P. corallorhiza (1303.7 Indiv/m2 ) but the difference was not significant. When sites (within each habitat) were compared, density did not show any significant differences between sites. Canopy height of Z. capensis (56.9 cm) was significantly higher compared to P. corallorhiza (16.6 cm), with no significant differences between sites. On the other hand, P. corallorhiza (0.9 cm) blades were significantly wider than Z. capensis (0.2 cm) leaves. Fractal D values followed the same trend as leaf/blade width with, with P. corallorhiza (1.8) having significantly higher Fractal D values than Z. capensis (1.5). The last two indices also had a positive relationship as Fractal D increased with increasing leaf/blade width. These results show that overall P. corallorhiza is more structurally complex than Z. capensis. Calibrated mini stereo underwater remote video systems (mini stereo-RUVs) were optimised in these two studied habitats to ensure they were suitable to measure and identify juvenile fishes. A pilot optimization study found that a minimum of five deployments and a minimum of 45 minutes filming duration is required to study fish assemblages in these two habitats. For comparison of fish assemblages and assessment of habitat use by fish, mini stereo-RUVs were deployed in both habitats (three sites per habitat) and were left to record for 60 minutes for a v total of five sampling occasions in seagrass and seven sampling occasions in macroalga between 7 September 2020 and 9 April 2021. Collected videos were analysed, with relative abundance (MaxN), richness and fish length extracted. Fish behaviour was also analysed and compared between habitats. Mean fish MaxN was slightly higher in Z. capensis (3.4) than in P. corallorhiza (2.9), although this result was not significant. Species diversity was significantly higher in P. corallorhiza as shown by both richness (Z. capensis = 11 and P. corallorhiza = 18) and the Shannon diversity index (Z. capensis = 1.3 and P. corallorhiza = 1.7). Both habitats were dominated by species from the family Sparidae, with six estuary-associated marine species common between the two habitats. Both Z. capensis and P. corallorhiza were dominated by juvenile fish, with more than 70 % of measured fish being juveniles. Fish length was not significantly different in the two habitats. Juvenile fish assemblages were significantly distinct between the two habitats (ANOSIM). In terms of habitat use, fish behaviour analysis showed that fish use both habitats as nurseries. There was no significant difference in fish behaviour in the two habitats and fish behaviours associated with higher levels of habitat use (slow meandering and feeding) were the most common behaviours in both habitats. Although not significant, feeding behaviour (also associated with a high degree of habitat use) was observed more in macroalga than in the seagrass habitat. Although none of the studied complexity indices could be related to abundance, both leaf/blade width and Fractal Dimension showed a positive relationship with the number of species recorded, while canopy height showed a strong negative relationship with the number of species. Overall, this study shows that Plocamium corallorhiza red macroalga in the shallow marine environment may be as important in shallow marine environments as Zostera capensis seagrass in estuaries as nursery habitats for marine fi , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Mkhize,Thembani
- Date: 2022-12
- Subjects: Sailing ships -- South Africa -- Algoa Bay --History , Marine fishes -- Algoa Bay -- South Africa , Fish improvement habitat
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59788 , vital:62429
- Description: Structurally complex habitats such as seagrass, mangroves, and seaweed are important as nurseries in estuaries and nearshore marine environments. While numerous studies have focussed on structurally complex vegetated habitats in estuaries, few studies have focussed on vegetated nursery habitats (particularly seaweed) in coastal areas and their importance. The main aim of this project is to examine the nature of shallow water vegetated habitat (Zostera capensis seagrass and Plocamium corallorhiza macroalga) usage by juvenile fish in the Algoa Bay shallow water seascape (Swartkops Estuary and Flat Rocks nearshore subtidal reef). This aim was achieved by quantifying and comparing complexity of these two habitat-forming species, and the fish assemblages (relative abundance, richness, size structure and behaviour) across the two habitats. To measure and compare complexity of Z. capensis and P. corallorhiza, canopy height, density and leaf/blade width were sampled. In addition to these structural complexity indices, Fractal D (dimensionless complexity indices) was also quantified using Image software. Zostera capensis (1553.3 Indiv/m2 ) had a slightly higher mean density compared to P. corallorhiza (1303.7 Indiv/m2 ) but the difference was not significant. When sites (within each habitat) were compared, density did not show any significant differences between sites. Canopy height of Z. capensis (56.9 cm) was significantly higher compared to P. corallorhiza (16.6 cm), with no significant differences between sites. On the other hand, P. corallorhiza (0.9 cm) blades were significantly wider than Z. capensis (0.2 cm) leaves. Fractal D values followed the same trend as leaf/blade width with, with P. corallorhiza (1.8) having significantly higher Fractal D values than Z. capensis (1.5). The last two indices also had a positive relationship as Fractal D increased with increasing leaf/blade width. These results show that overall P. corallorhiza is more structurally complex than Z. capensis. Calibrated mini stereo underwater remote video systems (mini stereo-RUVs) were optimised in these two studied habitats to ensure they were suitable to measure and identify juvenile fishes. A pilot optimization study found that a minimum of five deployments and a minimum of 45 minutes filming duration is required to study fish assemblages in these two habitats. For comparison of fish assemblages and assessment of habitat use by fish, mini stereo-RUVs were deployed in both habitats (three sites per habitat) and were left to record for 60 minutes for a v total of five sampling occasions in seagrass and seven sampling occasions in macroalga between 7 September 2020 and 9 April 2021. Collected videos were analysed, with relative abundance (MaxN), richness and fish length extracted. Fish behaviour was also analysed and compared between habitats. Mean fish MaxN was slightly higher in Z. capensis (3.4) than in P. corallorhiza (2.9), although this result was not significant. Species diversity was significantly higher in P. corallorhiza as shown by both richness (Z. capensis = 11 and P. corallorhiza = 18) and the Shannon diversity index (Z. capensis = 1.3 and P. corallorhiza = 1.7). Both habitats were dominated by species from the family Sparidae, with six estuary-associated marine species common between the two habitats. Both Z. capensis and P. corallorhiza were dominated by juvenile fish, with more than 70 % of measured fish being juveniles. Fish length was not significantly different in the two habitats. Juvenile fish assemblages were significantly distinct between the two habitats (ANOSIM). In terms of habitat use, fish behaviour analysis showed that fish use both habitats as nurseries. There was no significant difference in fish behaviour in the two habitats and fish behaviours associated with higher levels of habitat use (slow meandering and feeding) were the most common behaviours in both habitats. Although not significant, feeding behaviour (also associated with a high degree of habitat use) was observed more in macroalga than in the seagrass habitat. Although none of the studied complexity indices could be related to abundance, both leaf/blade width and Fractal Dimension showed a positive relationship with the number of species recorded, while canopy height showed a strong negative relationship with the number of species. Overall, this study shows that Plocamium corallorhiza red macroalga in the shallow marine environment may be as important in shallow marine environments as Zostera capensis seagrass in estuaries as nursery habitats for marine fi , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
In vitro evaluation of vernonia amygdalina gold nanoparticles to stimulate apoptosis in breast cancer lines
- Authors: Pali, Zenande
- Date: 2022-12
- Subjects: Breast--Cancer--Treatment--Technological innovations , Apoptosis -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59933 , vital:62696
- Description: Breast cancer is the most prevalent cancer in women and triple negative breast cancer (TNBC) is one of the most aggressive breast cancer subtypes. Current breast cancer therapies are associated with several side effects and less effective treatment. Therefore, the development of new approaches to improve cancer treatment are needed. The use of gold nanoparticles (AuNPs) for anti-cancer effects is one of the most promising research areas in the field of nanotechnology, because nanoparticles are readily functionalized and can passively accumulate at the tumor site without affecting healthy tissues. The green synthesis of AuNPs is an eco-friendly, costeffective, fast, and non-toxic method that is associated with fewer side effects.The aim of this study was to evaluate the cytotoxicity and apoptotic activity exhibted by Vernonia amygdalina gold nanoparticles (VA-AuNPs) in triple negative breast cancer cell lines. The aqueous extract of Vernonia amygdalina was used to reduce gold salts to form VA-AuNPs. The VA-AuNPs were synthesised at a temperature of 100 °C and pH 7. The synthesised green AuNPs were charactised using ultraviolet-visible spectroscopy, dynamic light scattering, and high resolution transmission electron microscopy. Spherical VA-AuNPs were succesfully synthesized with average size of 17.11 ± 2.82 nm and a zeta potential of -36.55 ± 1.15 mV. The MTT assay revealed that VA-AuNPs significantly reduced (p cell viability for both mouse (E0771) and human (MDA-MB231) TNBC cell lines in a dose-dependent manner. The PrestoBlue assay showed a consistent decrease in cell numbers over time, suggesting either a decrease in proliferation or increase in apoptosis. The apoptotic effects of VAAuNPs were assessed using the CaspGLOW Fluorescein active caspase-8 staining kit. It indicated that caspase 8 was activated when cells were treated with VA-AuNPs. E0771 and MDA-MB231 cells were compared when treated with VA-AuNP and a similar trend was established. The HRTEM image showed VA-AuNPs in an vesiclelike structure inside the cell. It can be concluded that the VA-AuNPs showed anticancer activities against TNBC cells. Caspase 8 is activated by VA-AuNPs, confirming the induction of apoptosis, but does not exclude the activation of the intrinsic apoptotic pathway or inhibition of proliferation activity. E0771 and MDA-MB231 cells showed similar cytotoxic activity and thus expected that the mechanism of action in these cell lines should also be similar. Future in vivo research, using the mouse model inoculated with E0771 TNBC cells, should be justified and comparable with human TNBC cells. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Pali, Zenande
- Date: 2022-12
- Subjects: Breast--Cancer--Treatment--Technological innovations , Apoptosis -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59933 , vital:62696
- Description: Breast cancer is the most prevalent cancer in women and triple negative breast cancer (TNBC) is one of the most aggressive breast cancer subtypes. Current breast cancer therapies are associated with several side effects and less effective treatment. Therefore, the development of new approaches to improve cancer treatment are needed. The use of gold nanoparticles (AuNPs) for anti-cancer effects is one of the most promising research areas in the field of nanotechnology, because nanoparticles are readily functionalized and can passively accumulate at the tumor site without affecting healthy tissues. The green synthesis of AuNPs is an eco-friendly, costeffective, fast, and non-toxic method that is associated with fewer side effects.The aim of this study was to evaluate the cytotoxicity and apoptotic activity exhibted by Vernonia amygdalina gold nanoparticles (VA-AuNPs) in triple negative breast cancer cell lines. The aqueous extract of Vernonia amygdalina was used to reduce gold salts to form VA-AuNPs. The VA-AuNPs were synthesised at a temperature of 100 °C and pH 7. The synthesised green AuNPs were charactised using ultraviolet-visible spectroscopy, dynamic light scattering, and high resolution transmission electron microscopy. Spherical VA-AuNPs were succesfully synthesized with average size of 17.11 ± 2.82 nm and a zeta potential of -36.55 ± 1.15 mV. The MTT assay revealed that VA-AuNPs significantly reduced (p cell viability for both mouse (E0771) and human (MDA-MB231) TNBC cell lines in a dose-dependent manner. The PrestoBlue assay showed a consistent decrease in cell numbers over time, suggesting either a decrease in proliferation or increase in apoptosis. The apoptotic effects of VAAuNPs were assessed using the CaspGLOW Fluorescein active caspase-8 staining kit. It indicated that caspase 8 was activated when cells were treated with VA-AuNPs. E0771 and MDA-MB231 cells were compared when treated with VA-AuNP and a similar trend was established. The HRTEM image showed VA-AuNPs in an vesiclelike structure inside the cell. It can be concluded that the VA-AuNPs showed anticancer activities against TNBC cells. Caspase 8 is activated by VA-AuNPs, confirming the induction of apoptosis, but does not exclude the activation of the intrinsic apoptotic pathway or inhibition of proliferation activity. E0771 and MDA-MB231 cells showed similar cytotoxic activity and thus expected that the mechanism of action in these cell lines should also be similar. Future in vivo research, using the mouse model inoculated with E0771 TNBC cells, should be justified and comparable with human TNBC cells. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-12
Investigation of thermal and electrical characteristics of crystalline silicon photovoltaic modules under varying operational conditions
- Authors: Vumbugwa, Monphias
- Date: 2022-12
- Subjects: Photovoltaic power generation -- South Africa , Silicon crystals -- South Africa , Solar cells
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/60014 , vital:62733
- Description: Solar energy has become an attractive and environmentally mindful method in electrical power generation as it contributes significantly to meeting the high demand for the power needed for socio and economic developments. The rise in deployment of Photovoltaic (PV) facilities with large capacity creates the need for accurate and reliable PV inspection techniques for optimum performance, the longevity of PV modules and quick return on PV investment. The performance of PV modules in the field is often monitored through several inspection methods that require a rapid throughput such as Thermal Infrared (TIR) imaging and current-voltage (I-V) measurements. Unmanned Aerial Vehicle (UAV) based TIR imaging is widely applied in large PV plants since it is cost-effective and is usually conducted in-situ while the plant is operating at irradiance levels above 600 W.m-2 . One of the outcomes of the interpretations of TIR images is an attempt to quantify the energy loss in PV plants associated with the abnormal thermal signatures identified on TIR images. No standard procedure has yet outlined the quantification of energy loss related to TIR images of underperforming modules since the interpretation of TIR images remains a challenge. PV modules operate under dynamic operating conditions which can influence the results and interpretation of thermal and electrical characterisation measurements. Dynamic operation conditions refer to any disorders in the operation of the modules and cells which cause a change in the current and voltage characteristics of the PV source. These dynamic operation conditions include; changesin load conditions, irradiance, soiling and shading levels. The tests were done under steady state conditions. Although measurements are generally done while the operating conditions are as steady as possible, some changes in conditions have a profound effect on thermal and electrical measurements. In this study, these effects and some of the changes in conditions that cause them were studied. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Vumbugwa, Monphias
- Date: 2022-12
- Subjects: Photovoltaic power generation -- South Africa , Silicon crystals -- South Africa , Solar cells
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/60014 , vital:62733
- Description: Solar energy has become an attractive and environmentally mindful method in electrical power generation as it contributes significantly to meeting the high demand for the power needed for socio and economic developments. The rise in deployment of Photovoltaic (PV) facilities with large capacity creates the need for accurate and reliable PV inspection techniques for optimum performance, the longevity of PV modules and quick return on PV investment. The performance of PV modules in the field is often monitored through several inspection methods that require a rapid throughput such as Thermal Infrared (TIR) imaging and current-voltage (I-V) measurements. Unmanned Aerial Vehicle (UAV) based TIR imaging is widely applied in large PV plants since it is cost-effective and is usually conducted in-situ while the plant is operating at irradiance levels above 600 W.m-2 . One of the outcomes of the interpretations of TIR images is an attempt to quantify the energy loss in PV plants associated with the abnormal thermal signatures identified on TIR images. No standard procedure has yet outlined the quantification of energy loss related to TIR images of underperforming modules since the interpretation of TIR images remains a challenge. PV modules operate under dynamic operating conditions which can influence the results and interpretation of thermal and electrical characterisation measurements. Dynamic operation conditions refer to any disorders in the operation of the modules and cells which cause a change in the current and voltage characteristics of the PV source. These dynamic operation conditions include; changesin load conditions, irradiance, soiling and shading levels. The tests were done under steady state conditions. Although measurements are generally done while the operating conditions are as steady as possible, some changes in conditions have a profound effect on thermal and electrical measurements. In this study, these effects and some of the changes in conditions that cause them were studied. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-12
Mesozooplankton and particle dynamics in Algoa Bay, South Africa
- Engelbrecht, Melindi Frances
- Authors: Engelbrecht, Melindi Frances
- Date: 2022-12
- Subjects: Marine zooplankton – Algoa bay -- South Africa , Estuarine ecology , Zooplankton –Ecology --South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59544 , vital:62157
- Description: Coastal ecosystems provide society with important ecosystem services: climate regulation, biogeochemical nutrient and waste cycling, food security, shoreline protection, tourism, and recreational support. Increased anthropogenic pressure on coastal ecosystems and changing environmental variables ultimately affect the provision of ecosystem services. Mesozooplankton are key trophic species and biological indicators of change within the marine environment and provide sound predictions of ecosystem responses to a changing climate due to their short life cycles and physiology linked to temperature. Algoa Bay has been the subject of extensive research and monitoring and encompasses a marine protected area (Addo Elephant National Park MPA). The Underwater Vision Profiler 5 (UVP5) was utilised with conventional sampling techniques of the PELTER monitoring program (i.e., Bongo nets) to investigate mesozooplankton (200 – 2000 µm) and particle (> 100 µm) dynamics within the dynamic coastal ecosystem of Algoa Bay, located within warmtemperate South Africa, in spring 2020 and summer 2021. This study revealed seasonal shifts in mesozooplankton taxa succession from spring herbivorous/omnivorous, dominated by copepods, to summer omnivorous/carnivorous mesozooplankton, dominated by copepods, Noctiluca sp., Cladocera, doliolids, salps and siphonophores. The mesozooplankton integrated abundance (mean ± standard error) increased from spring to summer, with 101 ± 26 (min. – max.: 18 – 200) x 103 ind m¯ 2 and 422 ± 80 (min. – max.: 37 – 1056) x 103 ind m¯ 2 , respectively. In summer, mesozooplankton composition was affected by the passage of a Natal Pulse, identified from satellite-derived sea level anomaly data. This study also provided the first vertical profiles of copepod distributions and suspended particles in Algoa Bay, with a peak of small particle (< 1 mm ESD) biomass close to the bottom and often, but not systematically, higher copepod abundances above the thermocline. The results presented herein are expected to contribute to the understanding of the coastal pelagic ecosystem in Algoa Bay in response to environmental perturbations , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Engelbrecht, Melindi Frances
- Date: 2022-12
- Subjects: Marine zooplankton – Algoa bay -- South Africa , Estuarine ecology , Zooplankton –Ecology --South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59544 , vital:62157
- Description: Coastal ecosystems provide society with important ecosystem services: climate regulation, biogeochemical nutrient and waste cycling, food security, shoreline protection, tourism, and recreational support. Increased anthropogenic pressure on coastal ecosystems and changing environmental variables ultimately affect the provision of ecosystem services. Mesozooplankton are key trophic species and biological indicators of change within the marine environment and provide sound predictions of ecosystem responses to a changing climate due to their short life cycles and physiology linked to temperature. Algoa Bay has been the subject of extensive research and monitoring and encompasses a marine protected area (Addo Elephant National Park MPA). The Underwater Vision Profiler 5 (UVP5) was utilised with conventional sampling techniques of the PELTER monitoring program (i.e., Bongo nets) to investigate mesozooplankton (200 – 2000 µm) and particle (> 100 µm) dynamics within the dynamic coastal ecosystem of Algoa Bay, located within warmtemperate South Africa, in spring 2020 and summer 2021. This study revealed seasonal shifts in mesozooplankton taxa succession from spring herbivorous/omnivorous, dominated by copepods, to summer omnivorous/carnivorous mesozooplankton, dominated by copepods, Noctiluca sp., Cladocera, doliolids, salps and siphonophores. The mesozooplankton integrated abundance (mean ± standard error) increased from spring to summer, with 101 ± 26 (min. – max.: 18 – 200) x 103 ind m¯ 2 and 422 ± 80 (min. – max.: 37 – 1056) x 103 ind m¯ 2 , respectively. In summer, mesozooplankton composition was affected by the passage of a Natal Pulse, identified from satellite-derived sea level anomaly data. This study also provided the first vertical profiles of copepod distributions and suspended particles in Algoa Bay, with a peak of small particle (< 1 mm ESD) biomass close to the bottom and often, but not systematically, higher copepod abundances above the thermocline. The results presented herein are expected to contribute to the understanding of the coastal pelagic ecosystem in Algoa Bay in response to environmental perturbations , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
Moult and energetics in three species from the Euplectes genus representing a gradient of elaborate plumage ornamentation
- Authors: Webb, Stacey Leigh
- Date: 2022-12
- Subjects: Sexual selection in animals – South Africa , Bird watching -- Africa, Southern , Plumage
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/60026 , vital:62734
- Description: Elaborate plumage ornamentation in birds has fascinated scientists since the 1800s. The evolution and persistence of elaborate and costly ornamentation seemed to be in opposition to the theory of natural selection. However, over the years research has revealed the role and functional significance of elaborate plumage ornamentation in sexual selection. Recent studies have shown that the energetic costs associated with moulting into new plumages are higher than maintenance costs, but these costs have not been quantified for species that exhibit elaborate breeding plumage ornamentation for sexual selection. In addition, for these sexually selected ornamental traits (signals) to have evolved and be maintained, there must be some aspect of individual quality that they convey to the receiver. Despite a large body of literature on sexual selection, honest signalling and ornamental plumage in birds, the physiological correlates of honest signalling during sexual selection and the messages these signals convey to the receivers are poorly understood. In this study, I investigated four aspects related to the honesty of the sexual selection signal. These were (i) seasonal variation in standardised resting metabolic rates of breeding and non-breeding birds, (ii) moult phenology, (iii) physiological parameters linked to honest signalling, and (iv) the energetic costs of production and maintenance of elaborate plumage ornamentation using three species from the Euplectes genus as model species. The three species selected, the red-collared widowbird (Euplectes ardens), fan-tailed widowbird (Euplectes axillaris) and the southern red bishop (Euplectes orix) represent a gradient of plumage elaboration and although the receivers of the sexual selection signals are known for these three species, the energetic cost of the signals and the underlying message the signals convey remain unknown. I measured seasonal variation in resting metabolic rate (RMR), body mass (Mb), thermoneutral zone (TNZ) and body temperature (Tb) over the course of two years in the three selected Euplectes species (E. ardens, E. axillaris and E. orix; chapter 2). My results showed no significant effect of season on RMR (except in E. orix females) suggesting that in these species the metabolic costs in summer (associated with breeding season) are comparable to the metabolic costs associated with thermoregulation during winter. Contrary to my prediction that metabolic costs would increase along a gradient of increasing tail length (due to the energetic costs Webb V associated with elaborate plumage ornamentation), I found no significant effect of species. The lack of a significant result indicates that once the initial investment in plumage is complete, other predictor variables play a role (in this case body mass). , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Webb, Stacey Leigh
- Date: 2022-12
- Subjects: Sexual selection in animals – South Africa , Bird watching -- Africa, Southern , Plumage
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/60026 , vital:62734
- Description: Elaborate plumage ornamentation in birds has fascinated scientists since the 1800s. The evolution and persistence of elaborate and costly ornamentation seemed to be in opposition to the theory of natural selection. However, over the years research has revealed the role and functional significance of elaborate plumage ornamentation in sexual selection. Recent studies have shown that the energetic costs associated with moulting into new plumages are higher than maintenance costs, but these costs have not been quantified for species that exhibit elaborate breeding plumage ornamentation for sexual selection. In addition, for these sexually selected ornamental traits (signals) to have evolved and be maintained, there must be some aspect of individual quality that they convey to the receiver. Despite a large body of literature on sexual selection, honest signalling and ornamental plumage in birds, the physiological correlates of honest signalling during sexual selection and the messages these signals convey to the receivers are poorly understood. In this study, I investigated four aspects related to the honesty of the sexual selection signal. These were (i) seasonal variation in standardised resting metabolic rates of breeding and non-breeding birds, (ii) moult phenology, (iii) physiological parameters linked to honest signalling, and (iv) the energetic costs of production and maintenance of elaborate plumage ornamentation using three species from the Euplectes genus as model species. The three species selected, the red-collared widowbird (Euplectes ardens), fan-tailed widowbird (Euplectes axillaris) and the southern red bishop (Euplectes orix) represent a gradient of plumage elaboration and although the receivers of the sexual selection signals are known for these three species, the energetic cost of the signals and the underlying message the signals convey remain unknown. I measured seasonal variation in resting metabolic rate (RMR), body mass (Mb), thermoneutral zone (TNZ) and body temperature (Tb) over the course of two years in the three selected Euplectes species (E. ardens, E. axillaris and E. orix; chapter 2). My results showed no significant effect of season on RMR (except in E. orix females) suggesting that in these species the metabolic costs in summer (associated with breeding season) are comparable to the metabolic costs associated with thermoregulation during winter. Contrary to my prediction that metabolic costs would increase along a gradient of increasing tail length (due to the energetic costs Webb V associated with elaborate plumage ornamentation), I found no significant effect of species. The lack of a significant result indicates that once the initial investment in plumage is complete, other predictor variables play a role (in this case body mass). , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
Spatial and temporal analysis of the critical zone in the Western rift valley corridor: towards earth stewardship science in East Africa
- Authors: Miller, Warren David
- Date: 2022-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/59771 , vital:62423
- Description: Over the coming decades, Africa is expected to experience disturbing effects due to climate change and increased land cover change due to human influences presenting a significant concern for the future well-being of human and biological systems, the latter being the foundation of ecosystem services supplied to humanity. Therefore, unprecedented transdisciplinary cooperation, coordination, and integration amongst researchers, government, and civil society are necessary to increase the resiliency of these systems. This study aims to provide an outline of the Africa Alive Corridors (AAC) as an essential model for the encouragement of sustainable development through Earth Stewardship science. These aims are accompanied by the quantification and forward modelling for land cover change of the Critical Zone over 10 Great Lake Basins across one of the AAC, the Western Rift Valley Corridor (WRVC), in East Africa between the years 2018 and 2060. This approach provides the foundation for implementing improved regional governance, better encouragement of sustainable development beyond the 2030 United Nations Sustainable Development Goals, and education programs, such as the AAC, that promote socio-ecological resilience through Earth Stewardship Science. The AAC archives a portion of East Africa as the WRVC, a corridor along the western branch of the East African Rift System that highlights twenty heritage nodes, primarily great lakes, mountain ranges, national parks, and biological hotspots. These heritage entities are associated with ca. 12-million-years of evolution and transformation of the East African topography and related African Great Lake (AGL) systems. The thesis defines the study area by delineating AGL basins intersected by the WRVC. Across these basins, land cover change analysis provides a platform for an integrated assessment of the projected health of the corridor region. Existing land cover datasets provide the initial conditions of the study area for 2008 and 2013. Land cover between 2008 and 2013 is cross-tabulated using the Land Cover Module in the Terrset software, followed by the iii delineation of sub-models and driver variable identification. The Multi-Layer Perceptron algorithm provides the transition potentials between tree cover, urban area, cropland, wetland, and open area classes. Change quantification and prediction using Markov Chain analysis are then established for 2018, 2030, and 2060. The model successfully simulated future land cover change and concluded that: (1) proximity to existing human activity, proximity to existing tree cover, and population are the primary drivers of change; (2) the dominant land cover of the ten lake basins for 2018 was cropland at ca. 48%, followed by tree cover at ca. 33%; (3) total anthropogenic change over the coming four decades equates to over ca. 52 000 km2 (5 200 000 ha), and particularly (4) an urban area is expected to increase by >130%. This assessment ultimately provides a platform for regional governance development at the basin scale and Earth Stewardship science in East Africa. These changes require transdisciplinary action from researchers to civil society. The AAC provides the foundation for understanding the dynamics of the systems that support life across broader spatial and temporal resolutions in Africa, highlighting the need for future generations to build socio-ecological resilience to anticipate challenges such as biodiversity loss posed by climate change and excessive land cover change. , Thesis (DSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Miller, Warren David
- Date: 2022-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/59771 , vital:62423
- Description: Over the coming decades, Africa is expected to experience disturbing effects due to climate change and increased land cover change due to human influences presenting a significant concern for the future well-being of human and biological systems, the latter being the foundation of ecosystem services supplied to humanity. Therefore, unprecedented transdisciplinary cooperation, coordination, and integration amongst researchers, government, and civil society are necessary to increase the resiliency of these systems. This study aims to provide an outline of the Africa Alive Corridors (AAC) as an essential model for the encouragement of sustainable development through Earth Stewardship science. These aims are accompanied by the quantification and forward modelling for land cover change of the Critical Zone over 10 Great Lake Basins across one of the AAC, the Western Rift Valley Corridor (WRVC), in East Africa between the years 2018 and 2060. This approach provides the foundation for implementing improved regional governance, better encouragement of sustainable development beyond the 2030 United Nations Sustainable Development Goals, and education programs, such as the AAC, that promote socio-ecological resilience through Earth Stewardship Science. The AAC archives a portion of East Africa as the WRVC, a corridor along the western branch of the East African Rift System that highlights twenty heritage nodes, primarily great lakes, mountain ranges, national parks, and biological hotspots. These heritage entities are associated with ca. 12-million-years of evolution and transformation of the East African topography and related African Great Lake (AGL) systems. The thesis defines the study area by delineating AGL basins intersected by the WRVC. Across these basins, land cover change analysis provides a platform for an integrated assessment of the projected health of the corridor region. Existing land cover datasets provide the initial conditions of the study area for 2008 and 2013. Land cover between 2008 and 2013 is cross-tabulated using the Land Cover Module in the Terrset software, followed by the iii delineation of sub-models and driver variable identification. The Multi-Layer Perceptron algorithm provides the transition potentials between tree cover, urban area, cropland, wetland, and open area classes. Change quantification and prediction using Markov Chain analysis are then established for 2018, 2030, and 2060. The model successfully simulated future land cover change and concluded that: (1) proximity to existing human activity, proximity to existing tree cover, and population are the primary drivers of change; (2) the dominant land cover of the ten lake basins for 2018 was cropland at ca. 48%, followed by tree cover at ca. 33%; (3) total anthropogenic change over the coming four decades equates to over ca. 52 000 km2 (5 200 000 ha), and particularly (4) an urban area is expected to increase by >130%. This assessment ultimately provides a platform for regional governance development at the basin scale and Earth Stewardship science in East Africa. These changes require transdisciplinary action from researchers to civil society. The AAC provides the foundation for understanding the dynamics of the systems that support life across broader spatial and temporal resolutions in Africa, highlighting the need for future generations to build socio-ecological resilience to anticipate challenges such as biodiversity loss posed by climate change and excessive land cover change. , Thesis (DSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
The co-evolution of Africa’s eastern margin and its primate fauna: implications for hominin evolution
- Authors: Mambalu, Philasande
- Date: 2022-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59755 , vital:62418
- Description: I investigated potential links between the diversification of African primate lineages and the physical evolution of the continent. I compared published phylogenetic trees based on mitochondrial and nuclear DNA for five clades: (a) Lorisoidea (galagos and pottos); (b) arboreal guenon monkeys (Cercopithecus and its allies); (c) living apes (including humans); (d) Papionini (baboons); and (e) savanna or “vervet” monkeys (Chlorocebus). I compared primate divergence dates with the ages of tectonic events, patterns of climatic change, and their palaeo-vegetational consequences. Based on present primate distributions, I estimated likely geographic locations of the divergence events. Finally, I compared the phylogenetic patterns of the primate clades with hominin evolutionary scenarios. Phylogenetic comparisons indicated three time periods when rates of speciation increased across the five primate clades: the Eocene – Oligocene transition (34 – 32 Ma); the mid-late Miocene (10 – 5 Ma); and the Pliocene – Pleistocene transition (2.7 – 2.3 Ma). Concentrated bursts of lineage splitting indicate a broadscale causal relationship between environmental change and lineage divergence. Human evolution followed similar biogeographic patterns to those of other primate clades. Tectonic events, climatic changes and palaeo-vegetational shifts are intimately connected, and have synergistic effects on biotic diversity. Tectonic events influence climatic change through their effects on oceanic circulation, planetary temperatures and rainfall patterns. Additionally, tectonic uplift and erosion may create geographic barriers to organismal dispersal across the continent, increasing the likelihood of geographic separation of populations and speciation. Recently evolved primate species show high levels of hybridisation for several generations after their initial divergence. Genus Homo generated ~10 species over 2.5 Ma. The emergence of these taxa likely involved substantial hybridisation, as demonstrated by the presence of Neanderthal genes within the H. sapiens genome. I suggest that this hybridisation contributed to the difficulties palaeoanthropologists often experience in distinguishing fossil hominin taxa. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Mambalu, Philasande
- Date: 2022-12
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59755 , vital:62418
- Description: I investigated potential links between the diversification of African primate lineages and the physical evolution of the continent. I compared published phylogenetic trees based on mitochondrial and nuclear DNA for five clades: (a) Lorisoidea (galagos and pottos); (b) arboreal guenon monkeys (Cercopithecus and its allies); (c) living apes (including humans); (d) Papionini (baboons); and (e) savanna or “vervet” monkeys (Chlorocebus). I compared primate divergence dates with the ages of tectonic events, patterns of climatic change, and their palaeo-vegetational consequences. Based on present primate distributions, I estimated likely geographic locations of the divergence events. Finally, I compared the phylogenetic patterns of the primate clades with hominin evolutionary scenarios. Phylogenetic comparisons indicated three time periods when rates of speciation increased across the five primate clades: the Eocene – Oligocene transition (34 – 32 Ma); the mid-late Miocene (10 – 5 Ma); and the Pliocene – Pleistocene transition (2.7 – 2.3 Ma). Concentrated bursts of lineage splitting indicate a broadscale causal relationship between environmental change and lineage divergence. Human evolution followed similar biogeographic patterns to those of other primate clades. Tectonic events, climatic changes and palaeo-vegetational shifts are intimately connected, and have synergistic effects on biotic diversity. Tectonic events influence climatic change through their effects on oceanic circulation, planetary temperatures and rainfall patterns. Additionally, tectonic uplift and erosion may create geographic barriers to organismal dispersal across the continent, increasing the likelihood of geographic separation of populations and speciation. Recently evolved primate species show high levels of hybridisation for several generations after their initial divergence. Genus Homo generated ~10 species over 2.5 Ma. The emergence of these taxa likely involved substantial hybridisation, as demonstrated by the presence of Neanderthal genes within the H. sapiens genome. I suggest that this hybridisation contributed to the difficulties palaeoanthropologists often experience in distinguishing fossil hominin taxa. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
The development of a flow route to synthesize 3- benzyl-6-bromo-2-methoxyquinoline, an intermediate of an anti-TB drug, bedaquilin
- Authors: Mpalala, Anele
- Date: 2022-12
- Subjects: Multidrug-resistant tuberculosis -- South Africa , Tuberculosis --Chemotherapy -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59864 , vital:62455
- Description: SA has a high number of reported cases of multidrug-resistant tuberculosis (MDR-TB). Bedaquiline is a newly approved active ingredient of an anti-tuberculosis drug with high potency against MDR-TB. The limited access to this life-saving medicine to many people in the world has driven a great deal of research effort by the scientific community to find new, better and more practical approaches to this drug. However, many of the reported synthetic procedures suffer from long reaction times, which in turn require many hours of effort by the chemists conducting the reactions. This has prompted us to investigate an efficient process towards the synthesis to produce the key intermediates of bedaquiline using continuous flow technology. Additionally, since there is not much literature on continuous flow synthesis of bedaquiline, this research revealed interesting continuous flow processes towards the drug. Chapter 1: In order to provide insight, the first chapter of this dissertation presents a comprehensive background and literature review on tuberculosis; its pathogenesis, impact, medicines available for the treatment as well as the drug classes with novel mode of action and new chemical entities. Furthermore, bedaquiline is discussed in detail with the various synthetic protocols of the drug. An introduction to continuous flow chemistry is discussed, along with an outline of its advantages and disadvantages. Chapter 2: The second chapter encompasses the experimental procedures utilized for both batch and continuous flow syntheses. The three key intermediates of bedaquiline were synthesized in batch synthesis and these compounds were characterized using 1H-NMR, 13C-NMR and FT-IR spectroscopy. Subsequently, the continuous flow synthesis protocols for the preparations of these intermediates and their optimization are outlined. Chapter 3: The results are explained in this chapter with detailed discussions of the batch synthesis and the continuous flow optimization of each step within the scope of this research. The investigation started with the batch preparation of the primary intermediate, N-(4-bromophenyl)-3-phenylpropanamide via an amidation reaction between 3-phenylpropanoyl chloride and p-bromoaniline. The primary intermediate then undergoes a subsequent formylation and cyclization via a Vilsmeier–Haack reaction to yield 3-benzyl-6-bromo-2-chloroquinoline. The chloroquinoline ii intermediate undergoes a methoxylation reaction to form 3-benzyl-6-bromo-2- methoxyquinoline. Subsequently, the batch protocol was transferred into continuous flow systems, optimized by varying reaction parameters within the synthesis route to achieve the as much yield as possible. The optimization studies showed an improvement in conversions in the various steps with shorter reaction times. The first step was optimized in a 0.2ml microreactor and because of the enhanced safety of flow chemistry, this exothermic amidation reaction was optimised at elevated temperatures to afford the primary intermediate at a 100% conversion within a residence time of 5 seconds using DMF as a solvent with DIPEA as a base. Next, the Vilsmier-Haack cyclization and chlorination was optimised in flow to afford the 2-chloroquinoline intermediate. The ability to use a back pressure regulator allowed for investigation of the effect of high temperature on the reaction and the 2- chloroquinoline intermediate was obtained at 78% conversion in a residence time of 30 min at 150 ⁰C using acetonitrile as a solvent. Subsequently, the optimization of the third step in flow to afford the central core intermediate of bedaquiline, 3-benzyl-6-bromo-2-methoxyquinoline, achieved 100% conversion in DMSO/MeOH solvent system at a residence time of 5 min. The effect of temperature, molar equivalence and solvent on reaction conversions could be observed in these steps. The results obtained from this study clearly demonstrated the successful establishment of an efficient flow chemistry protocol that can be used to successfully synthesize all intermediates within the scope of this research. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Mpalala, Anele
- Date: 2022-12
- Subjects: Multidrug-resistant tuberculosis -- South Africa , Tuberculosis --Chemotherapy -- South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59864 , vital:62455
- Description: SA has a high number of reported cases of multidrug-resistant tuberculosis (MDR-TB). Bedaquiline is a newly approved active ingredient of an anti-tuberculosis drug with high potency against MDR-TB. The limited access to this life-saving medicine to many people in the world has driven a great deal of research effort by the scientific community to find new, better and more practical approaches to this drug. However, many of the reported synthetic procedures suffer from long reaction times, which in turn require many hours of effort by the chemists conducting the reactions. This has prompted us to investigate an efficient process towards the synthesis to produce the key intermediates of bedaquiline using continuous flow technology. Additionally, since there is not much literature on continuous flow synthesis of bedaquiline, this research revealed interesting continuous flow processes towards the drug. Chapter 1: In order to provide insight, the first chapter of this dissertation presents a comprehensive background and literature review on tuberculosis; its pathogenesis, impact, medicines available for the treatment as well as the drug classes with novel mode of action and new chemical entities. Furthermore, bedaquiline is discussed in detail with the various synthetic protocols of the drug. An introduction to continuous flow chemistry is discussed, along with an outline of its advantages and disadvantages. Chapter 2: The second chapter encompasses the experimental procedures utilized for both batch and continuous flow syntheses. The three key intermediates of bedaquiline were synthesized in batch synthesis and these compounds were characterized using 1H-NMR, 13C-NMR and FT-IR spectroscopy. Subsequently, the continuous flow synthesis protocols for the preparations of these intermediates and their optimization are outlined. Chapter 3: The results are explained in this chapter with detailed discussions of the batch synthesis and the continuous flow optimization of each step within the scope of this research. The investigation started with the batch preparation of the primary intermediate, N-(4-bromophenyl)-3-phenylpropanamide via an amidation reaction between 3-phenylpropanoyl chloride and p-bromoaniline. The primary intermediate then undergoes a subsequent formylation and cyclization via a Vilsmeier–Haack reaction to yield 3-benzyl-6-bromo-2-chloroquinoline. The chloroquinoline ii intermediate undergoes a methoxylation reaction to form 3-benzyl-6-bromo-2- methoxyquinoline. Subsequently, the batch protocol was transferred into continuous flow systems, optimized by varying reaction parameters within the synthesis route to achieve the as much yield as possible. The optimization studies showed an improvement in conversions in the various steps with shorter reaction times. The first step was optimized in a 0.2ml microreactor and because of the enhanced safety of flow chemistry, this exothermic amidation reaction was optimised at elevated temperatures to afford the primary intermediate at a 100% conversion within a residence time of 5 seconds using DMF as a solvent with DIPEA as a base. Next, the Vilsmier-Haack cyclization and chlorination was optimised in flow to afford the 2-chloroquinoline intermediate. The ability to use a back pressure regulator allowed for investigation of the effect of high temperature on the reaction and the 2- chloroquinoline intermediate was obtained at 78% conversion in a residence time of 30 min at 150 ⁰C using acetonitrile as a solvent. Subsequently, the optimization of the third step in flow to afford the central core intermediate of bedaquiline, 3-benzyl-6-bromo-2-methoxyquinoline, achieved 100% conversion in DMSO/MeOH solvent system at a residence time of 5 min. The effect of temperature, molar equivalence and solvent on reaction conversions could be observed in these steps. The results obtained from this study clearly demonstrated the successful establishment of an efficient flow chemistry protocol that can be used to successfully synthesize all intermediates within the scope of this research. , Thesis (MSc) -- Faculty of Science, School of Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-12
The effect of limestone ammonium nitrate and chicken manure fertilizers on growth, yield and quality of two cabbage cultivators
- Authors: Nongogo Chumani
- Date: 2022-12
- Subjects: Cabbage -- South Africa , Field crops -- Nutrition -- South Africa , fertilizers
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59922 , vital:62695
- Description: Cabbage is a well-known and popular crop in South Africa. As a highly nutritious leafy green vegetable, it is produced and sold to a variety of markets, from formal markets to hawkers, for human consumption and as animal feed. The cabbage crop contributes positively to food security, health, and households’ financial wellbeing. As a crop, cabbage is known to be a heavy feeder due to its high nutritional requirements (in terms of fertiliser) particularly nitrogen. This high requirement can be supplied by either synthetic or by organic fertilisers in the form of animal manures. However, fertiliser has proven to be a challenge due to its high costs, as its prices increase rapidly each year. The current study aimed to determine the most effective fertilisation method for the growth, quality, and yield of cabbage (Brassica oleracea var. capitata). Two fertiliser types (chicken manure and limestone ammonium nitrate) were applied, and the treatments were repeated five times over two planting sessions on two cultivars, Grandslam and Empowa, at concentrations of 0%, 100% and 150%. A control for each treatment / cultivar was also grown. The parameters plant height, head diameter, pests and disease development, quality and dry mass were measured to determine the effect on growth, yield, and quality of the cabbage crop. From each planting, a total of 60 cabbages served as specimens for data collection purposes. The research trial was conducted in open field and laid out in a split-plot block method. The cultivar was allocated to the main plot, while the fertiliser treatments served as the sub-plots. The study was carried out for a period of six months, which allowed for data collection to be done in two different growing conditions. Planting was done manually by hand in planting bags, and washed river sand was used as a substrate (growing medium). The data collected during the experiment was analysed by means of statistical data analysis software STATISTICA and the methods applied were a three-way analysis of variance (ANOVA). The analysis of variance was performed at a significance level of p as a means to determine a correlation of relationships for all set parameters (variables) for both cultivars, treatments and plantings. The results of the study showed that the two fertiliser types, namely limestone ammonium nitrate (LAN) and chicken manure, both had a significant effect (p on plant height, head diameter, dry mass. Also, the pest and disease development and quality of cabbage were significantly influenced by the fertiliser types and season (climate). The interactive effect of cultivar and fertiliser was statistically significant. Empowa showed better results on chicken manure compared to LAN. In the case of Grandslam, however, no significant fertiliser effect was observed. The study also showed that fertilisation with a fertiliser that contains high nitrogen (N) content promotes pest and disease incidence. Increasing N application rate resulted into an increase of pest and disease incidence. The change of season, which promotes different growth conditions (in terms of temperature, water requirements, pests, and diseases) for the plants was found to have had an influence on the study results. Lasty, it was observed that chicken manure fertiliser yields a cabbage with a good internal and external quality compared to limestone ammonium nitrate fertiliser. Lastly, when considering all treatment rates applied, the recommended quantity of 100% (in both chicken manure and LAN) yielded favorable results. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Nongogo Chumani
- Date: 2022-12
- Subjects: Cabbage -- South Africa , Field crops -- Nutrition -- South Africa , fertilizers
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59922 , vital:62695
- Description: Cabbage is a well-known and popular crop in South Africa. As a highly nutritious leafy green vegetable, it is produced and sold to a variety of markets, from formal markets to hawkers, for human consumption and as animal feed. The cabbage crop contributes positively to food security, health, and households’ financial wellbeing. As a crop, cabbage is known to be a heavy feeder due to its high nutritional requirements (in terms of fertiliser) particularly nitrogen. This high requirement can be supplied by either synthetic or by organic fertilisers in the form of animal manures. However, fertiliser has proven to be a challenge due to its high costs, as its prices increase rapidly each year. The current study aimed to determine the most effective fertilisation method for the growth, quality, and yield of cabbage (Brassica oleracea var. capitata). Two fertiliser types (chicken manure and limestone ammonium nitrate) were applied, and the treatments were repeated five times over two planting sessions on two cultivars, Grandslam and Empowa, at concentrations of 0%, 100% and 150%. A control for each treatment / cultivar was also grown. The parameters plant height, head diameter, pests and disease development, quality and dry mass were measured to determine the effect on growth, yield, and quality of the cabbage crop. From each planting, a total of 60 cabbages served as specimens for data collection purposes. The research trial was conducted in open field and laid out in a split-plot block method. The cultivar was allocated to the main plot, while the fertiliser treatments served as the sub-plots. The study was carried out for a period of six months, which allowed for data collection to be done in two different growing conditions. Planting was done manually by hand in planting bags, and washed river sand was used as a substrate (growing medium). The data collected during the experiment was analysed by means of statistical data analysis software STATISTICA and the methods applied were a three-way analysis of variance (ANOVA). The analysis of variance was performed at a significance level of p as a means to determine a correlation of relationships for all set parameters (variables) for both cultivars, treatments and plantings. The results of the study showed that the two fertiliser types, namely limestone ammonium nitrate (LAN) and chicken manure, both had a significant effect (p on plant height, head diameter, dry mass. Also, the pest and disease development and quality of cabbage were significantly influenced by the fertiliser types and season (climate). The interactive effect of cultivar and fertiliser was statistically significant. Empowa showed better results on chicken manure compared to LAN. In the case of Grandslam, however, no significant fertiliser effect was observed. The study also showed that fertilisation with a fertiliser that contains high nitrogen (N) content promotes pest and disease incidence. Increasing N application rate resulted into an increase of pest and disease incidence. The change of season, which promotes different growth conditions (in terms of temperature, water requirements, pests, and diseases) for the plants was found to have had an influence on the study results. Lasty, it was observed that chicken manure fertiliser yields a cabbage with a good internal and external quality compared to limestone ammonium nitrate fertiliser. Lastly, when considering all treatment rates applied, the recommended quantity of 100% (in both chicken manure and LAN) yielded favorable results. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
Uptake and storage of nutrients by primary producers in the Swartkops Estuary
- Authors: Whitfield, Emily Cailyn
- Date: 2022-12
- Subjects: Estuarine ecology --South Africa --Swartkops River Estuary , Eutrophication—Research
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59611 , vital:62195
- Description: Estuaries occur at the interface between the terrestrial and marine environment and as such act as the last ‘filtering’ mechanism prior to nutrient pollution entering the adjacent ocean. This study focused on the Swartkops Estuary which is eutrophic and requires the removal of nutrients. The role of phytoplankton as nutrient filters and storage of nutrients by seagrass and salt marsh was investigated. This study found that phytoplankton temporarily took up a large percentage of dissolved inorganic nitrogen (max. 99%) and dissolved silica (max. 76%) and limited amounts of dissolved inorganic phosphorus (max. 18%). The amount of carbon, nitrogen and phosphorus stored by the salt marsh species Spartina maritima and Salicornia tegetaria and the seagrass species Zostera capensis were determined. It was found that the salt marsh grass Spartina maritima stored the most nutrients (149.61 ± 16.59 N g m-2 ; 105.44 ± 13.41 P g m-2 ; 1690.52 ± 168.90 C g m-2 ), while for the salt marsh succulent Salicornia tegetaria less nutrients were stored (27.01 ± 4.17 N g m-2 ; 22.97 ± 3.21 P g m-2 ; 458.66 ± 69.43 C g m-2 ). Zostera capensis also acted as a nutrient store (22.17 ± 6.94 N g m-2 ; 23.75 ± 4.70 P g m-2 ; 221.10 ± 26.74 C g m-2 ). The macrophytes were able to store nutrients for longer periods and thus prevent these nutrients from being exported into the adjacent ocean. On the contrary, phytoplankton uptake was temporary as the nutrients are released once the bloom decays. Without intervention there will be an increase of harmful algal blooms (HABs) and fish kills in the eutrophic Swartkops Estuary. Nutrient input from upstream wastewater treatment works, canals and stormwater run-off must be reduced. Conservation and management of the seagrass and salt marsh habitats is needed to ensure the long-term storage of nutrients , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Whitfield, Emily Cailyn
- Date: 2022-12
- Subjects: Estuarine ecology --South Africa --Swartkops River Estuary , Eutrophication—Research
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59611 , vital:62195
- Description: Estuaries occur at the interface between the terrestrial and marine environment and as such act as the last ‘filtering’ mechanism prior to nutrient pollution entering the adjacent ocean. This study focused on the Swartkops Estuary which is eutrophic and requires the removal of nutrients. The role of phytoplankton as nutrient filters and storage of nutrients by seagrass and salt marsh was investigated. This study found that phytoplankton temporarily took up a large percentage of dissolved inorganic nitrogen (max. 99%) and dissolved silica (max. 76%) and limited amounts of dissolved inorganic phosphorus (max. 18%). The amount of carbon, nitrogen and phosphorus stored by the salt marsh species Spartina maritima and Salicornia tegetaria and the seagrass species Zostera capensis were determined. It was found that the salt marsh grass Spartina maritima stored the most nutrients (149.61 ± 16.59 N g m-2 ; 105.44 ± 13.41 P g m-2 ; 1690.52 ± 168.90 C g m-2 ), while for the salt marsh succulent Salicornia tegetaria less nutrients were stored (27.01 ± 4.17 N g m-2 ; 22.97 ± 3.21 P g m-2 ; 458.66 ± 69.43 C g m-2 ). Zostera capensis also acted as a nutrient store (22.17 ± 6.94 N g m-2 ; 23.75 ± 4.70 P g m-2 ; 221.10 ± 26.74 C g m-2 ). The macrophytes were able to store nutrients for longer periods and thus prevent these nutrients from being exported into the adjacent ocean. On the contrary, phytoplankton uptake was temporary as the nutrients are released once the bloom decays. Without intervention there will be an increase of harmful algal blooms (HABs) and fish kills in the eutrophic Swartkops Estuary. Nutrient input from upstream wastewater treatment works, canals and stormwater run-off must be reduced. Conservation and management of the seagrass and salt marsh habitats is needed to ensure the long-term storage of nutrients , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-12
Using spatial explicit capture-recapture model to investigate the demography and spatial dynamics of lion prides in Pilanesberg National Park
- Authors: Bettings, Isabella Aletta
- Date: 2022-12
- Subjects: Lions--Behavior--South Africa , Animals tracks -- Pilanesberg National Park -- North West
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59655 , vital:62318
- Description: Lions are apex predators that play a vital role in the ecosystem. They regulate prey species through predation and other non-consumptive means. Factors that have influenced the decline of lion populations across Africa in the last half century, are loss of habitat, human wildlife conflict and the depletion of prey species. Extensive reintroductions of lions have been conducted across South Africa in order to restore their numbers in protected areas. The Pilanesberg National Park (PNP) was one of many protected areas that reintroduced lions. Their numbers were well documented by management until 2005 where they lost track of the population numbers. During this unfortunate period, there was an observed decline in prey numbers. The aim of this dissertation was to estimate the abundance, movement, and sex ratio of lions, in PNP. Abundance, movement, and sex ratio were determined by a three-month intensive lion survey. The location of each lion encounter was recorded on a mobile device which had an application installed called Cybertracker (v3). Photographs were taken of each Lion to build identification kits. For the data analysis, I used the Bayesian spatial explicit capture-recapture (SECR) model. This model takes time, space, and the robustness of an individual lion into account. Robustness is the measure of how well a lion maintains their functionality, when various stressors are applied (Harmsen, Foster, & Quigley, 2020). The estimated lion population in PNP was 44 lions (>1 year) with a density of 8.8 lions per 100 km2 . The estimated mean home range size of male lions was 279 km2 with a highest probability density (HPD) range of 179 – 385 km2 . The estimated mean home range of female lions was 191 km2 with a HPD range of 135 – 262 km2 . The larger home range size for male lions and smaller home range size for females is found v throughout the African continent in protected areas. The estimated sex ratio was 0.9♀:1♂, which is unexpected as PNP sex ratios between male and female lions is usually 2♀:1♂. A future sampling design for PNP was produced from the completed lion survey dataset. I drove a total of 7350 km and evaluated the influence of varied sampling efforts (i.e., kms driven) on precision estimates and relative bias for abundance, movement, and sex ratio. I found that a minimum of 4 000 km was needed to adequately estimate the lion abundance, movement, and sex ratio in this small fenced protected area. These findings can be used to help guide management to the most cost-effective sampling method and still obtain accurate estimates for monitoring lions. By showing management what is required for appropriate lion surveys this might help improve future monitoring. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2022
- Full Text:
- Date Issued: 2022-12
- Authors: Bettings, Isabella Aletta
- Date: 2022-12
- Subjects: Lions--Behavior--South Africa , Animals tracks -- Pilanesberg National Park -- North West
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/59655 , vital:62318
- Description: Lions are apex predators that play a vital role in the ecosystem. They regulate prey species through predation and other non-consumptive means. Factors that have influenced the decline of lion populations across Africa in the last half century, are loss of habitat, human wildlife conflict and the depletion of prey species. Extensive reintroductions of lions have been conducted across South Africa in order to restore their numbers in protected areas. The Pilanesberg National Park (PNP) was one of many protected areas that reintroduced lions. Their numbers were well documented by management until 2005 where they lost track of the population numbers. During this unfortunate period, there was an observed decline in prey numbers. The aim of this dissertation was to estimate the abundance, movement, and sex ratio of lions, in PNP. Abundance, movement, and sex ratio were determined by a three-month intensive lion survey. The location of each lion encounter was recorded on a mobile device which had an application installed called Cybertracker (v3). Photographs were taken of each Lion to build identification kits. For the data analysis, I used the Bayesian spatial explicit capture-recapture (SECR) model. This model takes time, space, and the robustness of an individual lion into account. Robustness is the measure of how well a lion maintains their functionality, when various stressors are applied (Harmsen, Foster, & Quigley, 2020). The estimated lion population in PNP was 44 lions (>1 year) with a density of 8.8 lions per 100 km2 . The estimated mean home range size of male lions was 279 km2 with a highest probability density (HPD) range of 179 – 385 km2 . The estimated mean home range of female lions was 191 km2 with a HPD range of 135 – 262 km2 . The larger home range size for male lions and smaller home range size for females is found v throughout the African continent in protected areas. The estimated sex ratio was 0.9♀:1♂, which is unexpected as PNP sex ratios between male and female lions is usually 2♀:1♂. A future sampling design for PNP was produced from the completed lion survey dataset. I drove a total of 7350 km and evaluated the influence of varied sampling efforts (i.e., kms driven) on precision estimates and relative bias for abundance, movement, and sex ratio. I found that a minimum of 4 000 km was needed to adequately estimate the lion abundance, movement, and sex ratio in this small fenced protected area. These findings can be used to help guide management to the most cost-effective sampling method and still obtain accurate estimates for monitoring lions. By showing management what is required for appropriate lion surveys this might help improve future monitoring. , Thesis (MSc) -- Faculty of Science, School of Natural Resource Management, 2022
- Full Text:
- Date Issued: 2022-12
A 5G Communication system based on flexible spectrum technology for the SKA
- Authors: Karembera, Reinhard Siwombe
- Date: 2022-04
- Subjects: Mobile communication systems--Technological innovations , Wireless communication systems -- Standards --South Africa
- Language: English
- Type: Doctoral theses
- Identifier: http://hdl.handle.net/10948/56177 , vital:56013
- Description: Faculty of Science Radio astronomy research is rapidly expanding across the African continent. At the same time, the fifth generation (5G) of mobile communication systems are also being researched and developed. Throughout history, mobile communication networks are known to affect the activities of radio astronomy. If not carefully managed, radio frequencies from mobile communication devices can severely affect radio astronomy observations. To that end, many techniques have been proposed to protect the radio astronomer from RFIs coming from radio communication networks. Some of the proposed techniques such as RFI quite zones and spectrum assignment by regulatory authorities will not be convenient during the implementation of 5G mobile networks. This is because 5G radio communication systems are expected to support spectrum-hungry application such as video-on-demand, augmented realities, high-definition television and so on. To realize this, the 5G networks will be forced to have access to protected radio spectrum, including those at which radio astronomy activities are being researched. To facilitate this, the 5G radio communication networks should have the intelligence to coexist within such protected spectrums without the consequences of radio frequency interferences (RFI) to the primary user. In this thesis, we present novel 5G networks with the intelligence that allow them to coexist within radio astronomy areas without introducing RFIs to the primary user. We proposed a photonic solution, keeping in mind the characteristic requirements for future 5G radio communication networks. The thesis begins by reviewing the current trend of radio astronomy research in Africa. It was found that radio astronomy research in Africa is growing rapidly. Many African countries such as South Africa and Ghana are at advanced stages when it comes to radio astronomy research. Therefore, the finding and proposal of this thesis will be valuable to such countries. In order to develop a radio access network (RAN) that can coexist within radio astronomy areas, the thesis reviewed past and present state-of-the-art RANs. Each access network was analyses for its feasibility to be implemented within radio astronomy areas to realize mobile communication without the consequences of RFIs to the astronomer. It was motivated that the current centralized radio access network (C-RAN) the best solution to be developed for radio communication within radio astronomy areas. This is because the C-RAN architecture is centralized by pooling network resources to a common point. From such pool, network resources can be controlled and shared among 5G network user, including radio astronomers and the surrounding communities. The next chapters reviewed photonic RF transmitters and their associated lasers currently being proposed to be used within C-RANs. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Karembera, Reinhard Siwombe
- Date: 2022-04
- Subjects: Mobile communication systems--Technological innovations , Wireless communication systems -- Standards --South Africa
- Language: English
- Type: Doctoral theses
- Identifier: http://hdl.handle.net/10948/56177 , vital:56013
- Description: Faculty of Science Radio astronomy research is rapidly expanding across the African continent. At the same time, the fifth generation (5G) of mobile communication systems are also being researched and developed. Throughout history, mobile communication networks are known to affect the activities of radio astronomy. If not carefully managed, radio frequencies from mobile communication devices can severely affect radio astronomy observations. To that end, many techniques have been proposed to protect the radio astronomer from RFIs coming from radio communication networks. Some of the proposed techniques such as RFI quite zones and spectrum assignment by regulatory authorities will not be convenient during the implementation of 5G mobile networks. This is because 5G radio communication systems are expected to support spectrum-hungry application such as video-on-demand, augmented realities, high-definition television and so on. To realize this, the 5G networks will be forced to have access to protected radio spectrum, including those at which radio astronomy activities are being researched. To facilitate this, the 5G radio communication networks should have the intelligence to coexist within such protected spectrums without the consequences of radio frequency interferences (RFI) to the primary user. In this thesis, we present novel 5G networks with the intelligence that allow them to coexist within radio astronomy areas without introducing RFIs to the primary user. We proposed a photonic solution, keeping in mind the characteristic requirements for future 5G radio communication networks. The thesis begins by reviewing the current trend of radio astronomy research in Africa. It was found that radio astronomy research in Africa is growing rapidly. Many African countries such as South Africa and Ghana are at advanced stages when it comes to radio astronomy research. Therefore, the finding and proposal of this thesis will be valuable to such countries. In order to develop a radio access network (RAN) that can coexist within radio astronomy areas, the thesis reviewed past and present state-of-the-art RANs. Each access network was analyses for its feasibility to be implemented within radio astronomy areas to realize mobile communication without the consequences of RFIs to the astronomer. It was motivated that the current centralized radio access network (C-RAN) the best solution to be developed for radio communication within radio astronomy areas. This is because the C-RAN architecture is centralized by pooling network resources to a common point. From such pool, network resources can be controlled and shared among 5G network user, including radio astronomers and the surrounding communities. The next chapters reviewed photonic RF transmitters and their associated lasers currently being proposed to be used within C-RANs. , Thesis (PhD) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-04
A case study assessment of the ecological and social status of the South African boat-based whale watching industry
- Authors: Tolsma, Minke
- Date: 2022-04
- Subjects: Whale watching --South Africa , Dolphin watching
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55887 , vital:54397
- Description: Boat-based whale-watching (BBWW) is a rapidly growing marine tourism industry globally and in South Africa (SA). BBWW in SA was established in 1998, and since then the number of permits available has doubled from 20 to 40. However, the establishment and past growth of the industry was undertaken without ecological research or impact assessments. Global research has shown that BBWW has the potential to cause short-term changes in cetacean behaviour and movement, which in turn can have long-term population-level consequences. National policies to grow ocean economies in SA may encourage excessive growth in the BBWW industry, impacting the ecological sustainability. In the absence of long-term impact data, the BBWW industry should be managed to minimise short-term changes. This study aimed to determine the social and ecological status of the SA BBWW industry, using Plettenberg Bay as a case study, to inform its long term sustainability. To achieve this aim: 1) the short-term behavioural and movement responses of six cetacean species to encounters with commercial BBWW vessels were measured; 2) the efficacy of three permit regulations (approach speed, approach angle, and encounter duration) to prevent short-term behavioural changes in three cetacean species was measured; 3) rates of compliance of BBWWoperators with current regulations were recorded; 4) BBWW tourists’ expectations of and satisfaction with the industry were investigated; as well as 5) operators’ views on the current permit regulations of the industry All research was conducted between September 2018 and November 2020 in Plettenberg Bay (SA) where two BBWW companies operating two vessels each are active. Three dolphin (bottlenose, common and humpback dolphins) and three whale (Bryde’s, humpback and southern right whales) species are targeted by the industry, and were encountered during this study. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Tolsma, Minke
- Date: 2022-04
- Subjects: Whale watching --South Africa , Dolphin watching
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55887 , vital:54397
- Description: Boat-based whale-watching (BBWW) is a rapidly growing marine tourism industry globally and in South Africa (SA). BBWW in SA was established in 1998, and since then the number of permits available has doubled from 20 to 40. However, the establishment and past growth of the industry was undertaken without ecological research or impact assessments. Global research has shown that BBWW has the potential to cause short-term changes in cetacean behaviour and movement, which in turn can have long-term population-level consequences. National policies to grow ocean economies in SA may encourage excessive growth in the BBWW industry, impacting the ecological sustainability. In the absence of long-term impact data, the BBWW industry should be managed to minimise short-term changes. This study aimed to determine the social and ecological status of the SA BBWW industry, using Plettenberg Bay as a case study, to inform its long term sustainability. To achieve this aim: 1) the short-term behavioural and movement responses of six cetacean species to encounters with commercial BBWW vessels were measured; 2) the efficacy of three permit regulations (approach speed, approach angle, and encounter duration) to prevent short-term behavioural changes in three cetacean species was measured; 3) rates of compliance of BBWWoperators with current regulations were recorded; 4) BBWW tourists’ expectations of and satisfaction with the industry were investigated; as well as 5) operators’ views on the current permit regulations of the industry All research was conducted between September 2018 and November 2020 in Plettenberg Bay (SA) where two BBWW companies operating two vessels each are active. Three dolphin (bottlenose, common and humpback dolphins) and three whale (Bryde’s, humpback and southern right whales) species are targeted by the industry, and were encountered during this study. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
A case study on the incidence and extent of medullated and coloured fibres in the commercially produced South African wool clip 2010 – 2017
- Authors: Zietsman, Jolandrie
- Date: 2022-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55445 , vital:52002
- Description: No formal study on the incidence and extent of medullated and coloured fibres has been performed in South Africa. The purpose of this research project was to investigate the validity of the claims that there has been an increase in the production of wool contaminated with medullated and coloured fibres. Therefore, the main aim of this study was to determine whether the incidence and extent of medullated and coloured fibres in the South African wool clip have changed over time. Secondly, the study aimed to determine whether the incidence and extent of medullated and coloured fibres have a distinct geographic distribution. This study explored eight years of wool production records (2010 to 2017) obtained from BKB, the largest wool broker in South Africa. For the purpose of this research, the wool-producing areas of South Africa were divided into 6 regions, according to average annual rainfall, vegetation type and major farming practices applied in the area. Statistical analysis of the data included descriptive statistics, analysis of variance and post-hoc tests, as well as regression analyses. This study succeeded in quantifying the extent and prevalence of contamination with medullated and coloured fibres in the South African wool clip. The overarching conclusions were: • Floating kemp is the most important contaminant of wool in South Africa, with the incidence of harsh kemp and coloured fibres being very low. • Generally, the most important areas that need attention in combatting contamination in the South African wool clip, are the Mixed Farming Summer Rainfall Region, the Semi-Arid Grassveld and the High Rainfall Grassland. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Zietsman, Jolandrie
- Date: 2022-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55445 , vital:52002
- Description: No formal study on the incidence and extent of medullated and coloured fibres has been performed in South Africa. The purpose of this research project was to investigate the validity of the claims that there has been an increase in the production of wool contaminated with medullated and coloured fibres. Therefore, the main aim of this study was to determine whether the incidence and extent of medullated and coloured fibres in the South African wool clip have changed over time. Secondly, the study aimed to determine whether the incidence and extent of medullated and coloured fibres have a distinct geographic distribution. This study explored eight years of wool production records (2010 to 2017) obtained from BKB, the largest wool broker in South Africa. For the purpose of this research, the wool-producing areas of South Africa were divided into 6 regions, according to average annual rainfall, vegetation type and major farming practices applied in the area. Statistical analysis of the data included descriptive statistics, analysis of variance and post-hoc tests, as well as regression analyses. This study succeeded in quantifying the extent and prevalence of contamination with medullated and coloured fibres in the South African wool clip. The overarching conclusions were: • Floating kemp is the most important contaminant of wool in South Africa, with the incidence of harsh kemp and coloured fibres being very low. • Generally, the most important areas that need attention in combatting contamination in the South African wool clip, are the Mixed Farming Summer Rainfall Region, the Semi-Arid Grassveld and the High Rainfall Grassland. , Thesis (MSc) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
An evolutionary algorithm approach to ecological optimal control problems
- Authors: Westcott, Amy-Rose
- Date: 2022-04
- Subjects: Mathematical optimization -- South africa , Evolutionary programming (Computer science)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55544 , vital:52812
- Description: There are several challenges associated with applying conventional (hereafter classic) optimal control (OC) methods to ecological optimal control problems (OCPs). Conditions required by these methods, including differentiability and convexity, for example, are not always met, and ecological problems do not always adhere to solvable OCP formulations. Moreover, mathematically optimal solutions do not always translate to optimal ecological strategies in practice. Despite this, alternative OC approaches are relatively under-explored. Evolutionary algorithms (EAs) circumvent many of the complex aspects of classic OC methods and have been successfully applied to diverse OCPs. Nevertheless, EAs have sel dom been applied to ecological OCPs. The viability of an EA approach to ecological OCPs was therefore investigated in the current study, facilitated by four case studies of increasing complexity and a genetic algorithm (GA) as a representative EA approach. To ascertain the accuracy of a GA approach, comparisons between a GA and classic OC methods were conducted in the first three case studies. The GA generated near-optima in these comparisons, comparable to the corresponding classical solutions, whilst avoiding non-trivial mathematical theory. Supported by these results, an unconventional OCP, that arguably cannot be solved using classic OC methods, was formulated in the fourth case study, and solved using a GA approach. The resulting solution was feasible and further conformed with strategies found to be successful in practice. Additionally, the GA approach was rela tively simple to apply in all case studies. These collective outcomes of demonstrated the viability of a GA as an OC method in eco logical OCPs, thereby supporting the use of an EA approach as an alternative to classic OC methods in ecological OCPs. The feasibility of an EA approach to atypical OCPs was further demonstrated, which may act to increase realism in OC applications. Further investigation in this regard is thus warranted by this study. , Thesis (MS) -- Faculty of Science, Mathematics and Applied Mathematics, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Westcott, Amy-Rose
- Date: 2022-04
- Subjects: Mathematical optimization -- South africa , Evolutionary programming (Computer science)
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55544 , vital:52812
- Description: There are several challenges associated with applying conventional (hereafter classic) optimal control (OC) methods to ecological optimal control problems (OCPs). Conditions required by these methods, including differentiability and convexity, for example, are not always met, and ecological problems do not always adhere to solvable OCP formulations. Moreover, mathematically optimal solutions do not always translate to optimal ecological strategies in practice. Despite this, alternative OC approaches are relatively under-explored. Evolutionary algorithms (EAs) circumvent many of the complex aspects of classic OC methods and have been successfully applied to diverse OCPs. Nevertheless, EAs have sel dom been applied to ecological OCPs. The viability of an EA approach to ecological OCPs was therefore investigated in the current study, facilitated by four case studies of increasing complexity and a genetic algorithm (GA) as a representative EA approach. To ascertain the accuracy of a GA approach, comparisons between a GA and classic OC methods were conducted in the first three case studies. The GA generated near-optima in these comparisons, comparable to the corresponding classical solutions, whilst avoiding non-trivial mathematical theory. Supported by these results, an unconventional OCP, that arguably cannot be solved using classic OC methods, was formulated in the fourth case study, and solved using a GA approach. The resulting solution was feasible and further conformed with strategies found to be successful in practice. Additionally, the GA approach was rela tively simple to apply in all case studies. These collective outcomes of demonstrated the viability of a GA as an OC method in eco logical OCPs, thereby supporting the use of an EA approach as an alternative to classic OC methods in ecological OCPs. The feasibility of an EA approach to atypical OCPs was further demonstrated, which may act to increase realism in OC applications. Further investigation in this regard is thus warranted by this study. , Thesis (MS) -- Faculty of Science, Mathematics and Applied Mathematics, 2022
- Full Text:
- Date Issued: 2022-04
Bootstrap-based tolerance intervals for nested two-way random effects models
- Authors: Erasmus, Christopher Daniel
- Date: 2022-04
- Subjects: Mathematical statistics-South Africa , Multilevel models
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55573 , vital:53331
- Description: Variance component, or random effects, models are frequently used by manufacturers to model the variance present in a manufacturing process. By applying tolerance intervals to variance component models, manufacturers are able to set upper and lower limits to monitor the variance within a process. Existing methods for constructing tolerance intervals are constrained by the necessity for data to be normally distributed. Recently, non-parametric bootstrap-based methods were developed by Deyzel (2018) to obtain α-expectation and (α, β) two-sided tolerance intervals for the two-way nested random effects model. Classical and non-parametric methods for obtaining tolerance intervals for the one way random effects model have been assessed in accordance with Rebafka et al. (2007). The present study assesses and compares classical, Bayesian and non-parametric methods for obtaining tolerance intervals for the two-way nested random effects model under different assumptions of the underlying distribution. Results show that the non-parametric methods provided relatively narrow intervals, and generally retain the nominal content and guarantee levels, regardless of the underlying distribution , Thesis (MSc) -- Faculty of Science, Mathematical Statistics , 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Erasmus, Christopher Daniel
- Date: 2022-04
- Subjects: Mathematical statistics-South Africa , Multilevel models
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55573 , vital:53331
- Description: Variance component, or random effects, models are frequently used by manufacturers to model the variance present in a manufacturing process. By applying tolerance intervals to variance component models, manufacturers are able to set upper and lower limits to monitor the variance within a process. Existing methods for constructing tolerance intervals are constrained by the necessity for data to be normally distributed. Recently, non-parametric bootstrap-based methods were developed by Deyzel (2018) to obtain α-expectation and (α, β) two-sided tolerance intervals for the two-way nested random effects model. Classical and non-parametric methods for obtaining tolerance intervals for the one way random effects model have been assessed in accordance with Rebafka et al. (2007). The present study assesses and compares classical, Bayesian and non-parametric methods for obtaining tolerance intervals for the two-way nested random effects model under different assumptions of the underlying distribution. Results show that the non-parametric methods provided relatively narrow intervals, and generally retain the nominal content and guarantee levels, regardless of the underlying distribution , Thesis (MSc) -- Faculty of Science, Mathematical Statistics , 2022
- Full Text:
- Date Issued: 2022-04
Cannabidiol: extraction and purification using flow Chemistry
- Authors: Bopape, Karabo
- Date: 2022-04
- Subjects: Supercritical fluid extraction -- South Africa , Cannabis -- Therapeutic use
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55723 , vital:53410
- Description: cannabinoids are of growing interest in research and pharmaceutical applications. Cannabidiol, which is a non-psychoactive cannabinoid, has many pharmaceutical applications. The current and main source of cannabidiol and other cannabinoids is from cannabis and hemp extractions. Current extraction methods involve the use of conventional solvent extraction, which employs the use of organic solvents, in some cases along with mechanical assistance from various equipment. Alternatively, another widely used extraction method is the use of supercritical extraction fluids (SC-CO2 being the most common). An alternative method, which uses chemical synthesis to derivatize cannabidiol to form an intermediate, which is crystalline and can easily be isolated from the extract; the crystalline intermediate can then be deprotected back to pure cannabidiol. In this research, we investigated and adapted the crystallisation method (originally employed by Adams) into continuous flow. In this research, hemp extracts and oilsrich in CBD were used as the source for cannabidiol. This synthesis was adapted into microreactors to synthesise the crystalline intermediate ester product (cannabidiol-3,5-bis-benzoate) which was subsequently reacted in a saponification ester hydrolysis to convert back and isolate pure CBD using continuous flow microreactor technology. Chapter one gives a comprehensive literature review and background on cannabidiol, along with its chemistry and pharmacological benefits in addition to a brief introduction to continuous flow technology with its advantages. Chapter two details the experimental procedures utilised for both batch and continuous flow syntheses. The continuous flow synthesis and subsequent hydrolysis of the ester intermediate, which shows the improvements in comparison to batch; giving higher product recovery (63% CBD), in shorter reaction times (2.5 min for CBD bis-benzoate; 30 min for CBD) is subsequently presented. This is expanded in chapter three with detailed discussions of the results attained during the continuous flow. The concluding remarks, the impact of this study and future work are elucidated in chapter four. , Thesis (MSc) -- Faculty of Science, Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Bopape, Karabo
- Date: 2022-04
- Subjects: Supercritical fluid extraction -- South Africa , Cannabis -- Therapeutic use
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55723 , vital:53410
- Description: cannabinoids are of growing interest in research and pharmaceutical applications. Cannabidiol, which is a non-psychoactive cannabinoid, has many pharmaceutical applications. The current and main source of cannabidiol and other cannabinoids is from cannabis and hemp extractions. Current extraction methods involve the use of conventional solvent extraction, which employs the use of organic solvents, in some cases along with mechanical assistance from various equipment. Alternatively, another widely used extraction method is the use of supercritical extraction fluids (SC-CO2 being the most common). An alternative method, which uses chemical synthesis to derivatize cannabidiol to form an intermediate, which is crystalline and can easily be isolated from the extract; the crystalline intermediate can then be deprotected back to pure cannabidiol. In this research, we investigated and adapted the crystallisation method (originally employed by Adams) into continuous flow. In this research, hemp extracts and oilsrich in CBD were used as the source for cannabidiol. This synthesis was adapted into microreactors to synthesise the crystalline intermediate ester product (cannabidiol-3,5-bis-benzoate) which was subsequently reacted in a saponification ester hydrolysis to convert back and isolate pure CBD using continuous flow microreactor technology. Chapter one gives a comprehensive literature review and background on cannabidiol, along with its chemistry and pharmacological benefits in addition to a brief introduction to continuous flow technology with its advantages. Chapter two details the experimental procedures utilised for both batch and continuous flow syntheses. The continuous flow synthesis and subsequent hydrolysis of the ester intermediate, which shows the improvements in comparison to batch; giving higher product recovery (63% CBD), in shorter reaction times (2.5 min for CBD bis-benzoate; 30 min for CBD) is subsequently presented. This is expanded in chapter three with detailed discussions of the results attained during the continuous flow. The concluding remarks, the impact of this study and future work are elucidated in chapter four. , Thesis (MSc) -- Faculty of Science, Biomolecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-04
Cape Vultures (Gyps coprotheres) and the threat of wind farms: a race to extinction?
- Authors: Brooke, Francis Rae
- Date: 2022-04
- Subjects: Wind Turbines --Blades --Materials , Gyps --South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55910 , vital:54399
- Description: The development of wind energy is increasing globally and is often considered more environmentally friendly when compared to fossil fuel technologies. However, one of the ecological drawbacks of wind energy are the collisions of wildlife with turbine blades. In addition, the resulting anthropogenic landscape transformation can negatively impact populations. The Cape Vulture (Gyps coprotheres), a large endangered southern African endemic species, thus may be at risk from turbine development. The species has decreased dramatically in the past 50 years and understanding how additional mortalities from wind turbine impacts affect the population is needed to ensure effective conservation efforts. This study aimed to determine the population response to this emerging threat. This study first reviewed the species-, site- and wind farm- specific traits that make Gyps species vulnerable to collision with wind energy infrastructure. It examined the monitoring practices employed during the pre- and post-construction phase and mitigation measures in South Africa and compared it with international standards. Furthermore, wind energy development may disrupt landscape connectivity and understanding which, and how habitat patches are used is needed. Using network theory combined with telemetry data from tagged individuals across three age classes, habitat patch use was identified. Further, environmental variables associated with identified habitat patches were identified. Additionally, considering the wind energy industry is expanding in South Africa, exploring how the Cape Vulture population will respond to this novel and emerging threat may aid future conservation management plans. Therefore, using a population viability analysis approach, the study explored how present and future wind turbine mortality scenarios impact the Cape Vulture population and how the population will respond to increased wind turbine development. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Brooke, Francis Rae
- Date: 2022-04
- Subjects: Wind Turbines --Blades --Materials , Gyps --South Africa
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55910 , vital:54399
- Description: The development of wind energy is increasing globally and is often considered more environmentally friendly when compared to fossil fuel technologies. However, one of the ecological drawbacks of wind energy are the collisions of wildlife with turbine blades. In addition, the resulting anthropogenic landscape transformation can negatively impact populations. The Cape Vulture (Gyps coprotheres), a large endangered southern African endemic species, thus may be at risk from turbine development. The species has decreased dramatically in the past 50 years and understanding how additional mortalities from wind turbine impacts affect the population is needed to ensure effective conservation efforts. This study aimed to determine the population response to this emerging threat. This study first reviewed the species-, site- and wind farm- specific traits that make Gyps species vulnerable to collision with wind energy infrastructure. It examined the monitoring practices employed during the pre- and post-construction phase and mitigation measures in South Africa and compared it with international standards. Furthermore, wind energy development may disrupt landscape connectivity and understanding which, and how habitat patches are used is needed. Using network theory combined with telemetry data from tagged individuals across three age classes, habitat patch use was identified. Further, environmental variables associated with identified habitat patches were identified. Additionally, considering the wind energy industry is expanding in South Africa, exploring how the Cape Vulture population will respond to this novel and emerging threat may aid future conservation management plans. Therefore, using a population viability analysis approach, the study explored how present and future wind turbine mortality scenarios impact the Cape Vulture population and how the population will respond to increased wind turbine development. , Thesis (PhD) -- Faculty of Science, School of Environmental Sciences, 2022
- Full Text:
- Date Issued: 2022-04
Chemical analysis of selected Eastern Cape medicinal plants
- Authors: Mahanjana, Lungelwa
- Date: 2022-04
- Subjects: Medicinal plants -- South Africa --Eastern Cape , Traditional medicine --South Africa -- Eastern Cape Maps
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55976 , vital:54560
- Description: In the rural parts of the Eastern Cape Province of South Africa, the use of medicinal plants to treat or manage diseases, including those associated with diabetes and HIV, is a common practice. However, the phytochemistry, safety and efficacy of these medicinal plants remain less investigated. Based on available traditional medicinal knowledge (through traditional healers, university library resources, ethnobotanical and science journals and other internet resources), traditional uses and availability, three plant species, namely Bulbine latifolia L. Wild, Dicerothamnus rhinocerotis Koek. and Olea europaea subsp. africana (Mill.) P.S. Green were selected and investigated for their hytoconstituents and biological effects. Phytochemical screening of the three medicinal plants was carried out quantitatively and qualitatively using spectrophotometric methods. Chemical profiling of the crude methanol extracts of all the plant species was successfully done by high-performance thin layer chromatography (HPTLC) and tentative identification of the secondary metabolites was achieved by liquid chromatography–mass spectrometry (LCMS). Cytotoxicity effect investigations on the crude extracts of the three species was done using the 3-[4,5- dimethylthiazole-2-yl]-2,5- hiphenyltetrazolium bromide (MTT) assay against HeLa cervical cancer cells. Isolation and purification of single compounds was done using chromatographic techniques (column chromatography (CC), and preparative thin-layer chromatography (PTLC)). Characterisation of single compounds was achieved using spectroscopic techniques such as Nuclear Magnetic Resonance (NMR), High Resolution Mass Spectrometry (HRMS), Ultra Violet Spectroscopy (UV-vis), Fourier-Transformed Infra-Red Spectroscopy (FTIR) and Single-Crystal X-ray Diffraction (XRD). For the first time from the methanol crude extract of the tubers of B. latifolia, the crystal structure of the phenylanthraquinone, knipholone (3.12) (1-(3-acetyl-2,6- dihydroxy-4- methoxyphenyl)-4,5-dihydroxy-2-methylanthraquinone), was isolated and elucidated along with its derivatives, isoknipholone (3.14), knipholone-6’-methyl (3.27). Moreover, two new compounds, (M)-8-O-β-D-glucopyranosyl-10’-α-L-rhamnopyranosyl-1,1',8',10'-tetrahydroxy 3,3'-dimethyl-[10,7'-bianthracene]-4,9,9'(10'H)-trione (3.23a) and (P)- 8-O-β-D glucopyranosyl-10’-α-L-rhamnopyranosyl-1,1',8',10'-tetrahydroxy-3,3'-dimethyl-[10,7'- bianthracene]-4,9,9'(10'H)-trione (3.23b) were isolated. , Thesis (PhD) -- Faculty of Science, School of Biomecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Mahanjana, Lungelwa
- Date: 2022-04
- Subjects: Medicinal plants -- South Africa --Eastern Cape , Traditional medicine --South Africa -- Eastern Cape Maps
- Language: English
- Type: Doctoral theses , text
- Identifier: http://hdl.handle.net/10948/55976 , vital:54560
- Description: In the rural parts of the Eastern Cape Province of South Africa, the use of medicinal plants to treat or manage diseases, including those associated with diabetes and HIV, is a common practice. However, the phytochemistry, safety and efficacy of these medicinal plants remain less investigated. Based on available traditional medicinal knowledge (through traditional healers, university library resources, ethnobotanical and science journals and other internet resources), traditional uses and availability, three plant species, namely Bulbine latifolia L. Wild, Dicerothamnus rhinocerotis Koek. and Olea europaea subsp. africana (Mill.) P.S. Green were selected and investigated for their hytoconstituents and biological effects. Phytochemical screening of the three medicinal plants was carried out quantitatively and qualitatively using spectrophotometric methods. Chemical profiling of the crude methanol extracts of all the plant species was successfully done by high-performance thin layer chromatography (HPTLC) and tentative identification of the secondary metabolites was achieved by liquid chromatography–mass spectrometry (LCMS). Cytotoxicity effect investigations on the crude extracts of the three species was done using the 3-[4,5- dimethylthiazole-2-yl]-2,5- hiphenyltetrazolium bromide (MTT) assay against HeLa cervical cancer cells. Isolation and purification of single compounds was done using chromatographic techniques (column chromatography (CC), and preparative thin-layer chromatography (PTLC)). Characterisation of single compounds was achieved using spectroscopic techniques such as Nuclear Magnetic Resonance (NMR), High Resolution Mass Spectrometry (HRMS), Ultra Violet Spectroscopy (UV-vis), Fourier-Transformed Infra-Red Spectroscopy (FTIR) and Single-Crystal X-ray Diffraction (XRD). For the first time from the methanol crude extract of the tubers of B. latifolia, the crystal structure of the phenylanthraquinone, knipholone (3.12) (1-(3-acetyl-2,6- dihydroxy-4- methoxyphenyl)-4,5-dihydroxy-2-methylanthraquinone), was isolated and elucidated along with its derivatives, isoknipholone (3.14), knipholone-6’-methyl (3.27). Moreover, two new compounds, (M)-8-O-β-D-glucopyranosyl-10’-α-L-rhamnopyranosyl-1,1',8',10'-tetrahydroxy 3,3'-dimethyl-[10,7'-bianthracene]-4,9,9'(10'H)-trione (3.23a) and (P)- 8-O-β-D glucopyranosyl-10’-α-L-rhamnopyranosyl-1,1',8',10'-tetrahydroxy-3,3'-dimethyl-[10,7'- bianthracene]-4,9,9'(10'H)-trione (3.23b) were isolated. , Thesis (PhD) -- Faculty of Science, School of Biomecular and Chemical Sciences, 2022
- Full Text:
- Date Issued: 2022-04
Classification and clustering based methods for outlier detection of solar resource data
- Authors: Abrahams, Waldo
- Date: 2022-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55423 , vital:51996
- Description: Almost 90% of the primary global energy demand is serviced from the burning of fossil fuels (Abas, Kalair & Khan, 2015). Owing to the detrimental environmental impact of this, a global energy transition to the use of renewable energy, including solar energy, is needed (Gielen et al., 2019). An important aspect that inhibits the growth of solar energy is accurate solar resource data. Such data is needed because knowledge of the future reliability and quality of energy production is required to analyse a system’s performance and determine financial implications (Sengupta et al., 2017). Existing methods used to detect outliers in solar resource data do not efficiently identify outliers and an accurate and robust approach is required (Eastwood, 2019). Using simulated and real-world data, this study investigates the use of several classification methods, along with a two-stage clustering-classification approach to accurately identify outliers in solar resource data. The Treebag method proves to be an adequate outlier detection method for solar resource data. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-04
- Authors: Abrahams, Waldo
- Date: 2022-04
- Subjects: Port Elizabeth (South Africa) , Eastern Cape (South Africa) , South Africa
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10948/55423 , vital:51996
- Description: Almost 90% of the primary global energy demand is serviced from the burning of fossil fuels (Abas, Kalair & Khan, 2015). Owing to the detrimental environmental impact of this, a global energy transition to the use of renewable energy, including solar energy, is needed (Gielen et al., 2019). An important aspect that inhibits the growth of solar energy is accurate solar resource data. Such data is needed because knowledge of the future reliability and quality of energy production is required to analyse a system’s performance and determine financial implications (Sengupta et al., 2017). Existing methods used to detect outliers in solar resource data do not efficiently identify outliers and an accurate and robust approach is required (Eastwood, 2019). Using simulated and real-world data, this study investigates the use of several classification methods, along with a two-stage clustering-classification approach to accurately identify outliers in solar resource data. The Treebag method proves to be an adequate outlier detection method for solar resource data. , Thesis (MSc) -- Faculty of Science, School of Computer Science, Mathematics, Physics and Statistics, 2022
- Full Text:
- Date Issued: 2022-04