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Assessment of indigenous forest degradation and deforestation along the wild coast, near Port St John’s, Eastern Cape Province, South Africa

  • Authors: Katende, Lukyamuzi Lucky Fulgentius
  • Date: 2018
  • Subjects: Deforestation -- South Africa -- Eastern Cape , Forest degradation -- South Africa -- Eastern Cape Forest management -- South Africa -- Eastern Cape
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/30649 , vital:31006
  • Description: Indigenous forests along the Wild Coast of the Eastern Cape Province have experienced both degradation and deforestation over the past decades. In early 2000, steps were taken to rehabilitate some of the degraded areas. Nevertheless, there is no monitoring mechanism in place, so little is known about the extent of degradation and impact of the rehabilitation efforts. The present study assesses the extent to which deforestation and degradation of the indigenous forests have occurred, and evaluates rehabilitation efforts in the study area around Port Saint John’s. Forest degradation was defined as the decrease in forest cover density while deforestation was defined as an increase in the trend of light forests and/ or a decrease in dense forests. The details for this study were obtained from multi – temporal remotely sensed data for a period between 1982 and 2013 (31 years). Multi-temporal Landsat satellite imagery for 1982, 1986, 1989, 2002, 2009 and 2013 was acquired and analysed. On the basis of prior knowledge of the area, the supervised classification approach was used. The Maximum likelihood supervised classification technique was used to extract information from satellite data. The classified images were filtered using a majority filtering procedure to reduce noise. Google Earth (Astrium) ancillary images were used to refine the classification based on expert rules. The derived changes in the degraded and rehabilitated areas were further validated through field visits. The overall image classification accuracy generated from Landsat image data ranged from 80% to 90%. It was noted that the area of dense forest almost doubled between 1986 and 1989, coinciding with a 59% decrease in the light forest. Subsequently, dense forests increased by 14,820 ha while light forests decreased by 16,690 ha between 1989 and 2002. The subsequent reduction in light forest coverage is explained by the establishment of the Participatory Forest Management (PFMA) approach by Department of Water Affairs and Forestry (DWAF) which reversed the degradation trend. However, specific degradation hotspots were identified, particularly where new settlements have been established. The emergence of the non-vegetated area increased gradually from 7% in 1986 to 23.4% in 2013. Notably, dense forest was observed to have experienced higher rates of forest degradation and deforestation than the light forest. The highest number patches were 4 recorded between 2002 and 1998, followed by between 2010 and 2013 and lastly 1986. Based on spatial connectedness of patches, the year 1986 had the highest landscape connectedness of forest vegetation (CONAT = 35.3) followed by 2002 and 1996 while the year 2010 and 2013 had the lowest landscape contiguity. Over the study period, the distribution of patches clearly shows that forest degradation and deforestation rates were lower in the years 1986, 1998 and tremendously increased in the later period of between 2010 and 2013. However, as a result of rehabilitation efforts, dense forest was seen to steadily gain more land than light forest. Finer details of degradation trends could not be easily picked from the images used in the study, given their spatial resolution limitations. That notwithstanding, the trends identified are good for overview decisions. The study has also established that de-agraianisation, forest restoration and rehabilitation greatly contributed to increased forest cover. Therefore, with more use of GIS by forest managers, and imagery of the high resolution being readily available, forests will in future be easily monitored using remote sensing.
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  • Date Issued: 2018

Assessment of the host potential of TETROL [(+)-(2R,3R)-1,1,4,4- tetraphenylbutane-1,2,3,4-TETROL] for the separation of isomers and related compounds

  • Authors: Dorfling, Sasha-Lee
  • Date: 2018
  • Subjects: Chemistry, Organic , Thermal analysis Hydrogen bonding
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10948/22060 , vital:29817
  • Description: In this study, we investigated the potential of a host compound, (+)-(2R,3R)-1,1,4,4- tetraphenylbutane-1,2,3,4-tetrol (TETROL), for use in the separation of isomers and related compounds using host-guest chemistry. The synthesis of this host was carried out using a standard Grignard procedure, reacting naturally-occurring optically active tartaric acid with phenylmagnesium bromide. The feasibility of this host for separating isomers and structurally-related compounds was investigated by recrystallizing it from various potential cyclic, aromatic and aliphatic guest compounds. The extent of host inclusion and guest separation were determined using 1H-NMR spectroscopy and GCMS analyses. Competition studies were conducted to establish the selectivity of TETROL for the various guest species and whether this host would be able to discriminate between them. In this instance, the host was recrystallized from equimolar amounts of binary, ternary, quaternary or quinary mixtures of the guests present in each target study. Subsequent binary or ternary competitions were conducted where the molar ratios of the guest species were varied beyond equimolar, and the guest selectivity of TETROL thus evaluated by means of selectivity profiles. Further analyses included single crystal X-ray diffraction (SCXRD), thermal analysis and Hirshfeld surface analysis. Any crystalline inclusion complex formed between host and guest, with suitable crystal quality, was analysed using SCXRD in order to determine the nature of any significant host–guest interactions present. Thermogravimetric and differential scanning calorimetry experiments provided further insight into complex stability by analysing the thermal events experienced by the complexes as they were heated at 10 °C/min. The data obtained from Hirshfeld surface analyses were used to determine whether host selectivity and/or thermal stability of the complexes were related to the number and types of interactions, observed from SCXRD, between host and guest. The ability of TETROL to discriminate between related compounds was favourable. This host proved to have selective preference for aniline over its methylated derivatives, N-methylaniline and N,N-dimethylaniline. It was also selective for cyclohexylamine over cyclohexanol and cyclohexanone, and discriminated against the pyridine, piperidine and dioxane heterocyclics in favour of morpholine. Furthermore, this host was successful in the selective separation of isomers; for example, it selectively showed discrimination between the three toluidine isomers (p-toluidine > m-toluidine > o-toluidine) and the cresols (p-cresol > m-cresol > o-cresol). Each guest mixture was selected based on data from experiments using either the industrial significance of its separation or because the mixture would add to the knowledge base of the host compound’s preferences and selectivities. In a separate study, TETROL and its derivative, (–)-(2R,3R)-2,3-dimethoxy-1,1,4,4- tetraphenylbutane-1,4-diol (DMT), were also allowed to compete for the inclusion of the guest cyclohexanone, where TETROL demonstrated superior ability. This host, in addition, showed potential for the separation of cis- and trans- 2-methylcyclohexanol.
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  • Date Issued: 2018

Assessment of the microalgal community structure and biomass in surface waterbodies of the Eastern Cape Karoo region earmarked for shale gas exploration

  • Authors: Roussouw, Natasha Kimberlee
  • Date: 2018
  • Subjects: Fresh water -- Eastern Cape , Water-supply -- South Africa -- Eastern Cape Water-supply, Rural -- South Africa -- Eastern Cape Constructed wetlands Watershed management
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/35234 , vital:33655
  • Description: The Eastern Cape Karoo region of South Africa typically displays low rainfall and high temperatures, which is particularly concerning considering the shale gas exploration/extraction project proposed recently. Almost 90% of the fracking fluid consists of water and with the Karoo region already classified as a water-stressed region, the increased demand for freshwater for fracking could put further pressure on water resources of the region. By understanding the ecological functioning of the lower trophic levels, likely implications for higher trophic levels can be determined, and ultimately, recommendations for mitigation actions can be made. Here, observations aimed at understanding the dynamics of lower trophic levels are presented, that is, the microalgal biomass and assemblage composition within three characteristic surface waterbodies of the region. In addition, the work focuses on the smaller, more dynamic temporary wetland systems typical of this water-scarce region, with the aim of understanding the significance of single species macrophyte cover in relation to the lower trophic levels. Thirty-three waterbodies were sampled (natural depressions = 13, dams = 9, rivers = 11) during November 2014 (austral spring) and April 2015 (austral autumn). Waterbody physico-chemistry, hydro-morphometry, habitat cover and surrounding land-use, as well as microalgal biomass and assemblage composition within each waterbody type were measured. Thirteen natural depression wetlands were sampled during October 2015, December 2015 and March 2016. Once again, waterbody physico-chemistry, microalgal biomass and assemblage composition were measured. However, in addition, Schoenoplectus decipiens macrophyte cover and microalgal (diatom) species composition were also determined. In general, no significant differences in microalgal biomass between the three main waterbody types of the Eastern Cape Karoo region were found; however, the different waterbody types each displayed distinct microalgal assemblage compositions. Also, Schoenoplectus decipiens cover had negligible effects on microalgal biomass and assemblages in the temporary wetlands investigated here. These results suggest that the generalist nature of species occupying these systems allows them to adapt to the ever-changing conditions typical of this region. Ongoing monitoring initiatives considering impending hydraulic fracturing activities should include a comprehensive species-level diversity census, which could further inform management of any impacts associated with this potential disturbance.
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  • Date Issued: 2018

Biological activity of macrofungi in South Africa against respiratory and lung disease

  • Authors: Didloff, Jenske
  • Date: 2018
  • Subjects: Macrofungi , Microbiology Medical microbiology
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/30138 , vital:30835
  • Description: Macrofungi represent an untapped source of natural bioactive compounds for various diseases, which have been targeted as potential therapeutic agents. The medicinal uses of macrofungi discovered to date include anticancer, antidiabetic, antioxidant, antimicrobial, and immunomodulatory properties. The knowledge regarding the medicinal uses of macrofungi in Africa is limited; however, it is believed that Africa may contain a large number of unidentified species of macrofungi. The objectives of this study were to: (i) screen the macrofungal extracts for antimicrobial activity against microorganisms responsible for respiratory diseases (e.g. Pseudomonas aeruginosa, Klebsiella pneumoniae, Streptococcus pneumoniae, Streptococcus pyogenes, Staphylococcus aureus, Mycobacterium tuberculosis, HIV-1), (ii) determine the effect of macrofungal extracts on bacterial morphology, (iii) investigate the cytotoxicity of macrofungal extracts against human lung carcinoma cells, and to elucidate the mechanism/s of action of cytotoxicity/anticancer activity. In vitro bioassays for antimicrobial activity included: ρ-iodonitrotetrazolium chloride assays and microplate alamar blue assay (MABA), while the HIV-1 reverse transcriptase colorimetric ELISA and HIV-1 protease fluorometric assay kits were used for anti-HIV activity. Cytotoxicity of the macrofungal species against A549 lung cancer cell line was measured using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assay, and the IC50 values determined for the most cytotoxic macrofungal spp. The mechanism of cytotoxicity was investigated by cell cycle analysis and fluorescent staining to observe morphological and biochemical changes (i.e. acridine orange, caspase activation). Ethanol extracts of Amanita foetidissima, Gymnopilus junonius, Pisolithus tinctorius, Fomitopsis lilacinogilva, Stereum hirsutum and Pycnoporus sanguineus showed higher antimicrobial activity against the Gram-positive bacteria than aqueous extracts, with S. pneumoniae being the most susceptible. The ethanol extracts of Agaricus campestris, Chlorophyllum molybdites, Gymnopilus penetrans, Pseudophaeolus baudonii and Laetiporus sulphureus exhibited anti-TB (tuberculosis) activity with minimum inhibitory concentrations (MICs) ranging between 500-1,000 μg/mL. C. molybdites ethanol extract inhibited HIV-1 protease activity (IC50: 49.7 μg/mL). The macrofungal extracts did not inhibit HIV-1 reverse transcriptase activity. Ethanol extracts of F. lilacinogilva, G. junonius, P. sanguineus and the aqueous extract iv of P. baudonii were cytotoxic against A549 lung cancer cells at IC50 values of 69.2±3.6, 57±5, 7.4±1.1 and 53.6±1.1 μg/mL, respectively. Cell cycle arrest was observed in the G2 phase for both P. sanguineus and P. baudonii, and G2/M and early M phases for G. junonius and F. lilacinogilva, respectively. Apoptosis induced by macrofungal extracts was confirmed by fluorescent staining. Morphological and biochemical changes included chromatin condensation, membrane blebbing, loss of cytoskeletal structure, caspase activation and phosphatidylserine translocation. This study demonstrates the biological activities of selected macrofungal extracts and their potential mechanisms of action. Isolation and identification of active compounds require further analysis.
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  • Date Issued: 2018

Capacitance spectroscopy of GaAs p-i-n solar cells embedded with GaNAs quantum wells

  • Authors: Venter, Danielle Ahlers
  • Date: 2018
  • Subjects: Solar cells , Photocatalysis Nanotechnology Fuel cells
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/21593 , vital:29713
  • Description: The search for higher efficiencies in solar cell technology has brought forth competitive ideas, among them tandem solar cells (TSC) and intermediate-band solar cells (IBSC). These cells deliver higher efficiencies by absorbing a wider range of the electro-magnetic spectrum compared to conventional cells, but do come with unique challenges. This includes, amongst others, the need to find suitable material systems, which can fully realise the requirements behind the concept. In this study, the notion of using dilute nitrides in III-V systems as a candidate for the IBSC is considered. Incorporation of GaNAs QW structures into GaAs p-i-n solar cells are structurally, optically and electrically characterised. At a first estimate the photovoltaic properties of the material is obtained through current-voltage (I-V) measurements under illumination. It is observed that the open circuit voltage (𝑉𝑂𝐶), short circuit current (𝐼𝑆𝐶) and conversion efficiency decrease upon the incorporation of the QWs. Electrically active defect levels are notorious for reducing the life time of electron-hole pairs, directly impacting cell efficiency. In an effort to gain a clearer understanding of this behavior, the study of electrically active deep level center present in such devices were investigated. A comprehensive understanding of defects in semiconductors remains of fundamental importance and thus reinforces this approach. This was done using two of the most commonly used semiconductor defect spectroscopy techniques viz. admittance spectroscopy (AS) and deep level transient spectroscopy (DLTS). Since in principle, these two techniques are similar, deep level related results were compared in order to verify the validity of the results. The devices under study, GaNAs/GaAs embedded QW p-i-n solar cells, were grown by molecular beam epitaxy (MBE). In particular, the doping of the quantum wells was varied and this effect on the electrical properties investigated. Four samples were studied and their electrical, optical and structural properties compared. The sample series consisted of a reference GaAs p-i-n diode that contained no embedded QWs and three GaAs p-i-n diodes each containing ten equally spaced and equally thick GaNAs QW layers. These layers were either Beryllium (Be) doped (p-type), un-doped or Silicon (Si) doped (n-type) respectively. Both AS and DLTS revealed deep level centers present in the devices. Each technique presented its own list of advantages and disadvantages and the collaborative use of both of them was found to be complementary in their determination of deep level defect centers. The correlation of these defects with the QWs is not clear as the structures were not optimized for capacitance spectroscopic measurements. NextNano++ simulation software was also used to theoretically model the electronic structure of the sample. The addition of the applied bias and its effect on the cross-over point of the Fermi level and the deep level energy, as well as the depletion width was investigated. This was a useful and essential tool for the interpretation of the results obtained and for the design of optimal structures for future studies.
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  • Date Issued: 2018

Characterization and ecology of selected micro-estuaries and micro-outlets in the Eastern Cape province, South Africa

  • Authors: Magoro, Mandla Leon
  • Date: 2018
  • Subjects: Estuarine ecology -- South Africa -- Eastern Cape , Estuaries -- Management Estuaries -- South Africa -- Eastern Cape
  • Language: English
  • Type: Thesis , Doctoral , DPhil
  • Identifier: http://hdl.handle.net/10948/31644 , vital:31640
  • Description: South Africa has more than 200 Temporarily Open/Closed Estuaries (TOCEs) along its approximately 3000 km coastline. In addition, there are approximately 200 micro-estuaries and micro-outlets on the subcontinent, many of which share some of the characteristics with TOCEs but differ in that they are supplied by localised coastal stream catchments with a more limited supply of freshwater and less connectivity to the marine environment. Between 2015 and 2016, this study endeavoured to investigate the physico-chemical properties, microalgal dynamics as well as the seasonal species abundance and composition of aquatic invertebrates and fishes in four micro-estuaries and four micro-outlets along the warm-temperate section of the Eastern Cape coast. The micro-outlets were dominated by oligohaline or freshwater conditions, while the micro-estuaries were mostly mesohaline. Microalgal biomass in these systems was influenced by temperature, nutrient conditions and light availability. Chironomidae and Ephemeroptera dominated benthic macro-invertebrate communities in the micro-outlets, while Amphipoda and Mysida were most dominant in micro-estuaries. Copepoda and Amphipoda dominated the zooplankton assemblages in both system types. Nekton communities in micro-outlets were dominated by juvenile Myxus capensis and tadpoles (mostly Xenopus laevis), while Oreochromis mossambicus, Gilchristella aestuaria, M. capensis and Mugil cephalus were the four most common species in the micro-estuaries. Seasonal variations in physico-chemical parameters and community composition of both the nekton and invertebrates were recorded during this study. Micro-estuaries and micro-outlets exhibited relatively lower diversity and abundances of biota than TOCEs. Furthermore, the micro-estuaries have a low estuarine function when compared to TOCEs, while the micro-outlets have very limited estuarine characteristics and were dominated by freshwater biota. The micro-systems are smaller in size and contain lower proportions of estuary-associated taxa when compared to larger estuarine systems such as TOCEs and permanently open estuaries. The results of this study confirm that there are distinctions between the biota of iv the two micro-system types, thus making biotic assemblages, together with physico-chemical parameters, a viable tool for differentiating between micro-estuaries and micro-outlets. This study represents the first investigation into the ecological functioning of micro-estuaries and micro-outlets. As a whole, micro-systems serve as nursery areas for freshwater-associated invertebrate taxa. Due to their limited periods of stability, micro-estuaries serve as intermediate nursery areas for 0+ juveniles of estuary-associated marine fish which, after less than a year, then migrate to larger estuarine systems located nearby. The small catchment size and short period of stability in these systems heightens their level of sensitivity to water flow alterations through dams, direct water abstraction, afforestation and watercourse diversion, while their lower buffering capacity makes them more susceptible to pollution and nutrient inputs from intensive agricultural activities and urban expansion.
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  • Date Issued: 2018

Compensation for distribution of timing and reference signals over optical fibre networks for telescope arrays

  • Authors: Wassin, Shukree
  • Date: 2018
  • Subjects: Fiber optics , Optical communications Very large array telescopes Optical fiber detectors
  • Language: English
  • Type: Thesis , Doctoral , DPhil
  • Identifier: http://hdl.handle.net/10948/36425 , vital:33941
  • Description: Significant advancements and developments have been made in optical frequency standards, in recent years. In order to verify the accuracy and preciseness of the disseminated RF signal, it is essential to compare its stability with the standards provided in literature as well as by metrology institutes. However, conventional frequency comparison techniques via satellites have extremely inferior stability qualities. As a result, the need for an alternative ultra-high precision RF transfer method presented itself. Highly accurate and precise frequency dissemination across optical fiber has proved a leading contender and a possible solution. When compared to conventional data transfer media, optical fiber has proven to be more superior and yields lower transmission errors and is immune to radio frequency interference. A further quality of optical fibre is that its transmission distance can be extended to greater degree than the traditional coaxial cable due to its low loss property. This thesis deals with the compensation of phase noise in single mode optical fibre. Phase noise degrades the performance and stability of the RF signal as well as the optical carrier frequency across long-haul optical networks. This work begins by experimentally demonstrating a unique and novel way for measuring the round-trip optical fibre latency times. The technique is based on all optical wavelength conversion using a stable PPS injection signal. The result highlighted the importance for active phase error compensation along a fibre link. Various computer simulations were used to study the influence of temperature fluctuation on the optical fibre. The first ever error signals generated at NMU was experimentally demonstrated. Results illustrated that, by minimizing the error voltage the phase difference between the transmitted and reference signals were reduced to zero. Performance analysis testing of the VCSEL phase correction actuator showed that majority of the dither iterations that induced the phase compensation took approximately 0.15 s. Residual frequency instabilities of 3.39791 x 10-12 at 1 s and 8.14848 x 10-12 at 103 s was measured when the 26 km G.655 fibre link was running freely. Experimental results further showed that the relative frequency stabilities measured at 1 s and 103 s were 4.43902 x 10-12 and 1.62055 x 10-13 during active compensation, respectively. The novel work presented in this thesis is exciting since the VCSEL is used as the optical source as well as the phase correction actuator. The benefits of such a device is that is reduces system costs and complexities.
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  • Date Issued: 2018

Correlation of photovoltaics plant performance metrics

  • Authors: Vumbugwa, Monphias
  • Date: 2018
  • Subjects: Photovoltaic cells , Perfomance -- Evaluation , Thin films
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/45657 , vital:38924
  • Description: The generation of electrical energy using Photovoltaic (PV) technology has increased globally with the decrease in the cost of PV systems and the rise in electrical power demand. In South Africa, the support by the government in implementing the Renewable Energy Independent Power Producer Procurement Programme (REIPPPP) has seen a growth in PV system deployment and investment in roof and ground mounted, stand alone and grid connected PV plants. This rapid growth shows that the PV industry is becoming highly competitive as there is a shift to low carbon emissions and it is anticipated to be the most affordable source of electricity. Hence, there is need to develop maintenance and fault diagnosis expertise and capabilities in the PV industry, which can in turn improve the dependability, productiveness and lifespan of PV systems. Solar PV modules directly receive and convert solar irradiance into electricity and may not generate the expected optimum energy due to abnormalities which arise when they are exposed to harsh unfavorable environmental conditions in the field. Thermal Infrared (TIR) imaging is widely used as a fault diagnosis tool in operating PV modules and mostly in large PV power plants. Therefore, there is need to research the interpretation of the observed thermal signatures and the impact that the anomalies have on electrical output of the system so as to improve the PV maintenance systems. This research focuses on identifying performance limiting defects using an Infra-Red (I-R) camera, mounted on an Unmanned Aerial Vehicle (UAV), to understand the effect of thermal signatures on current-voltage (I-V) characteristics of PV module strings. Aerial TIR imaging using a UAV can rapidly identify abnormalities in operational PV modules strings as hotspots. Any deviation of the string I-V curve, from the expected, indicates a problem with one or more PV modules in the string. However, locating the faulty module involves measuring I-V parameters of the individual modules in a string, which is not feasible in large PV power plants. Therefore, there is a need to estimate the power loss associated with the thermal signatures in PV module strings. Visual inspection may help in identifying the exact cause of some hotspots, while other hotspots need special characterization techniques, such as Electroluminescence (EL) and UV Fluorescence (UV-F), which can indicate if a solar cell is cracked or has weak busbars or contact finger connections.
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  • Date Issued: 2018

Corrosion resistance of nanocrystalline titanium zirconium nitride layers deposited on ZIRLO

  • Authors: Nyembe, Hlanganani Siphelele
  • Date: 2018
  • Subjects: Zirconium alloys , Titanium alloys Nanocrystals Nanotechnology
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/34744 , vital:33435
  • Description: Zirconium (Zr) alloys are used as nuclear fuel cladding in water-cooled nuclear reactors. Being in contact with steam, the Zr-alloy is oxidised and it absorbs hydrogen. The hydrogen pickup in Zr-alloys induces embrittlement of the tubes due to hydride formation. In this study, effectiveness of corrosion resistant nanocrystalline titanium zirconium nitride (nc-TiZrN) coatings on the surface of a Zr-alloy for the reduction of corrosion and hydrogen pickup is investigated. The nc-TiZrN layers were deposited onto the surface of ZIRLO® using the cathodic arc vapour deposition (CAVD) technique. The influence of nc-TiZrN coatings on the corrosion performance of ZIRLO® was investigated under the following conditions: (a) In an oxygen atmosphere at various temperatures from 400 to 900 ℃ for 30 minutes, (b) for various exposure times from 6 – 24 hours with the temperature kept constant at 500 ℃ in a tube furnace, and (c) in pure steam for 30 days at 360 ℃ and 18.7 MPa in an autoclave. The corrosion properties of the nc-TiZrN coated ZIRLO were compared to uncoated ZIRLO for all experiments. Following corrosion testing, the TiZrN coatings and oxide layers were investigated by scanning and transmission electron microscopy and energy dispersive X-ray spectroscopy. The TiZrN coating had a thickness of ~3.8 μm with a small number of Ti-rich and Nb-rich inclusions. The coating exhibited a single phase solid solution of Ti0.42Zr0.58N with a NaCl-type crystal structure and columnar nanocrystals. These columnar nanocrystals showed a strong {111} preferred orientation and the {111} planes of the TiZrN crystals are oriented parallel to the (001) planes of α-ZIRLO grains with <001> direction perpendicular to the coating/ZIRLO interface. The corrosion testing at various temperatures from 400 to 900 ℃ for 30 minutes showed that the TiZrN coating oxidises slowly and retained its microstructure, composition and crystallinity up to 600 ℃. At higher temperatures above 600 ℃, the TiZrN layer completely oxidised to a non-protective TiZr-oxide layer and resulted in rapid corrosion of the underlying ZIRLO substrate. The rapid corrosion was not observed in the uncoated ZIRLO sample for all temperatures. The results of samples subjected to annealing treatment at 500 ℃ in an oxygen atmosphere at various times up to 24 hours revealed that the TiZrN layer oxidises faster than ZIRLO. This was confirmed by sub-cubic and sub-parabolic oxide growth kinetics observed in the uncoated ZIRLO which are slower than the parabolic kinetics of TiZrN coated samples. In all coated samples, the spallation was observed near the edges of the samples. The spallation was caused by rapid corrosion of the underlying ZIRLO substrate which resulted from the penetration of oxygen ions between the TiZrN coating and ZIRLO substrate along the edges of the samples. In pure steam for 30 days at 360 ℃, a complete loss of the TiZrN layer occurred but the results show that the coating might have delayed the corrosion of ZIRLO. In summary, corrosion resistance of nc-TiZrN coated ZIRLO was lower than that of uncoated ZIRLO. The study shows that the failure of TiZrN coatings leads to rapid corrosion of the underlying ZIRLO substrate which was not observed on the uncoated ZIRLO. It is not yet understood why the presence TiZrN coatings reduced the oxidation resistance of ZIRLO.
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  • Date Issued: 2018

Deep learning applied to the semantic segmentation of tyre stockpiles

  • Authors: Barfknecht, Nicholas Christopher
  • Date: 2018
  • Subjects: Neural networks (Computer science)
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/23947 , vital:30647
  • Description: The global push for manufacturing which is environmentally sustainable has disrupted standard methods of waste tyre disposal. This push is further intensified by the health and safety risks discarded tyres pose to the surrounding population. Waste tyre recycling initiatives in South Africa are on the increase; however, there is still a growing number of undocumented tyre stockpiles developing throughout the country. The plans put in place to eradicate these tyre stockpiles have been met with collection, transport and storage logistical issues caused by the remoteness and distant locales. Eastwood (2016) aimed at optimising the logistics associated with collection, by estimating the number of visible tyres from images of tyre stockpiles. This research was limited by the need for manual segmentation of each tyre stockpile located within each image. This research proposes the use of semantic segmentation to automatically segment images of tyre stockpiles. An initial review of neural network, convolutional network and semantic segmentation literature resulted in the selection of Dilated Net as the semantic segmentation architecture for this research. Dilated Net builds upon the VGG-16 classification architecture to perform semantic segmentation. This resulted in classification experiments which were evaluated using precision, recall and f1-score. The results indicated that regardless of tyre stockpile image dimension, fairly accurate levels of classification accuracy can be attained. This was followed by semantic segmentation experiments which made use of intersection over union (IoU) and pixel accuracy to evaluate the effectiveness of Dilated Net on images of tyre stockpiles. The results indicated that accurate tyre stockpile segmentation regions can be obtained and that the trained model generalises well to unseen images.
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  • Date Issued: 2018

Determining productivity, residual damage and cost of two alternative harvesting systems in pinus elliottii thinning

  • Authors: Dembure, Tigere Pasca , Spinelli, Raffaele , Ramantswana, Muedanyi
  • Date: 2018
  • Subjects: Pinus caribaea , Forests and forestry Logging Harvesting -- South Africa
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/22016 , vital:29813
  • Description: Pinus elliottii is the second most dominant softwood grown in the South African plantation forestry industry. It possesses desirable timber characteristics and is useful for production of solid wood products. In the silviculture of softwoods (grown for solid wood products), thinning is an important tending operation. It is necessary for stand hygiene and volume increment of residual trees through the creation of growing space. The selection of a suitable harvesting system for thinning is vital. The system of choice has to attain higher productivity, cause the least damage to residual trees and must be cost effective. From as early as 2000 the South African forestry industry witnessed a general shift towards the use of fully mechanised cut-to-length harvesting systems. This has been a result of high labour turnover, increased labour costs, increased timber demand and the effects of HIV and AIDS on forestry workers. With this recent introduction of mechanised systems, they have not been benchmarked against conventional harvesting systems. In this regard, two harvesting systems were studied side-by-side for productivity, residual damage and cost in a seventh row second thinning operation in P. elliottii stands. First thinnings generate poor financial returns since small trees are harvested and they have a relatively low financial value but have a relatively high operational cost per unit harvested. The second thinning operation is usually the thinning operation that is most likely to result in an intermediate financial return for the organisation, hence the need to benchmark these harvesting systems during the second thinning. These systems were a fully mechanised cut-to-length (CTL) and a semi-mechanised tree length (TL) system. The fully mechanised system comprised of a harvester (felling) and a forwarder (extracting) and the semi-system consisted of felling by chainsaw, tractor extraction, roadside processing by chainsaw and stacking by three-wheeled logger. Two uniform compartments planted with P. elliottii were selected for the study. A total number of 32 plots (16 plots per compartment) were marked and randomly assigned between the two treatments, each plot comprised of seven rows, with the middle row clear-cut and three rows on either side, where marked trees were selectively removed. Within each plot, the number of removal trees ranged from 80 to 105. The diameter, height and form of each removal tree were measured to determine tree volume and ultimately determine productivity. Before analysis, plot characteristics were compared to determine if conditions were equal for both treatments using the Mann-Whitney test at alpha level ˂ 0.05. There was a statistically significant difference in total operator efficiency between the two systems (p ˂ 0.0001). The fully mechanised system attained higher levels of productivity than the semi-mechanised system (15.58 m3/SMH versus 5.26 m3/SMH, for felling and 15.56 m3/SMH versus 5.29 m3/SMH, for the extraction operation). Operator productivity comparisons were restricted to the two harvester operators, and one operator achieved 16.9 m3/SMH while the other operator achieved 14.3 m3/SMH. Different operator working technique contributed to the productivity differences with one operator spending (on average) four seconds less per tree on the fell-process work element. Residual tree damage was assessed immediately after all felling and extraction had taken place. Damage size was measured as ellipse surface area. For each record of residual damage, the damage type was noted, damage position along the stem, and tree position from extraction trail. The most predominant damage type was bark peel. The motor-manual system caused five per cent damage and the fully mechanised system inflicted only three per cent damage to the residual trees. Residual tree damage from the semi-mechanised system mainly occurred at the root zone, and occurred more frequently on edge trees. The mechanised CTL system was characterised by high investment and operational costs. The mechanised system incurred 3037.75 R/SMH while the semi-mechanised system incurred 1667.10 R/SMH. The difference in total costs per year between both systems was 56.29 per cent, with the fully mechanised system being more expensive. The high capacity and the superior technology of mechanised harvesting systems may not be fully exploited in thinnings, therefore harvesting systems with lower capital costs and reasonable productivity can be competitive.
  • Full Text:
  • Date Issued: 2018

Development of high capacity lithium-manganese-rich cathode materials xLi2MnO3•(1-x)LiMn0.5Ni0.5O2 for lithium ion batteries

  • Authors: Rapulenyane, Nomasonto
  • Date: 2018
  • Subjects: Lithium ion batteries , Electrochemistry Lithium cells
  • Language: English
  • Type: Thesis , Doctoral , DPhil
  • Identifier: http://hdl.handle.net/10948/34766 , vital:33442
  • Description: In this study, a facile synthesis method was developed to produce layered-layered cathode materials with the formula xLi2MnO3•(1-x)LiMO2 (M= Ni and Mn) referred to as lithium-manganese-rich materials for lithium ion batteries. The prepared materials displayed high capacity ≥200 mAh/g at a current density of 20 mA/g in the voltage range of 2.0 V to 4.8 V. In particular the cathode material prepared at pH 10.0 delivered a high initial discharge capacity of 266 mAh/g at 20 mA/g current density and maintained a discharge capacity ≥220 mAh/g at 50 mA/g after 50 cycles. The synthesis method was used to further investigate the effect of lithium ratio in the layered-layered material. Li1+xMn0.6Ni0.2O2, x= 0.2, 0.25, 0.3 and 0.4 cathode materials were produced respectively. The BET surface area analysis results showed that Li1.3Mn0.6Ni0.2O2 material had comparatively higher surface area to the other cathode materials and also delivered good electrochemical results. XPS showed that the cation distribution is affected by the increase in lithium ratio, the Mn4+ percentages decreased significantly with an increase in lithium ratio. All materials peaks deconvoluted into two peaks namely Mn4+ and Mn3+, Li1.3Mn0.6Ni0.2O2 had the highest percentages of the stable Mn4+ 70.8%. Further investigation focused on the effect of the sintering temperature on the structure and the electrochemical performance of Li1+xMn0.6Ni0.2O2, x= 0.25, 0.3 and 0.4 cathode materials. X-ray diffraction showed the same patterns for all cathode materials sintered at 700˚C, 800˚C and 900˚C. Rietveld refined results however, showed that the increase in the sintering temperature, results in a decrease in the Li2MnO3 component percentage in the layered structures. Scanning electron microscopy images further proved that the particle size increases with increasing temperature. The charge–discharge tests of coin cells demonstrated that the materials sintered at 800˚C delivered higher discharge capacities above 200 mAh/g at 20 mA/g current density when compared to the materials made at the lower temperatures. Lastly the cathode material prepared at pH 10.0 was further evaluated in a cell using lithium titanate oxide Li4Ti5O12 as anode material. The cells delivered an initial discharge capacity of 213 mAh/g at 20 mA/g within a voltage range 3.3V-0.5V. The coin cells developed in this work delivered good cycling performance.
  • Full Text:
  • Date Issued: 2018

Development of InSb/GaSb quantum dots by MOVPE

  • Authors: Ahia, Chinedu Christian
  • Date: 2018
  • Subjects: Semiconductors , Quantum electronics Organometallic compounds
  • Language: English
  • Type: Thesis , Doctoral , DPhil
  • Identifier: http://hdl.handle.net/10948/23382 , vital:30537
  • Description: There has been an increasing interest in the modification of semiconductor band structures through the reduction of their dimensions, which simultaneously increases the band gap energy of the material and gives rise to flexibility in device properties. Advances in III-V antimony (Sb) based semiconductor fabrication have triggered the quest for extension of the emission/absorption wavelength range of this family of compounds for optoelectronic devices operating in the mid-infrared region of the electromagnetic spectrum. An interesting material system for mid-infrared (MIR) applications is indium antimonide (InSb) quantum dots (QDs) within a gallium antimonide (GaSb) matrix. However, its band alignment and emission wavelength has been the subject of some interest and controversy over the years. This study focuses on the development of InSb/GaSb QDs by metal organic vapour phase epitaxy (MOVPE). The samples were grown on different substrates using various growth parameters in order to vary the size, density and aspect ratio of the dots. Interfacial growth interruptions while flowing various source precursors through the reactor were investigated in order to influence the chemical termination of the surface, and hence the resulting strain in the structures. The samples were characterized using photoluminescence spectroscopy, scanning probe microscopy, scanning electron microscopy, X-ray diffraction and transmission electron microscopy. Likewise, the band alignment, energy levels, and carrier wave functions of the samples in this work were modelled theoretically using the nextnanomat software (version 3.1.0.0). A comparison of growth on two different GaSb substrates [(100) 2° off towards <111>B ± 0.1ᵒ and (111) ± 0.1ᵒ] using similar growth conditions yielded a higher dot density on the (100) substrate compared to the (111) substrate. This was attributed to the presence of terraces/atomic steps induced by the misorientation on the (100) substrate, which invariably gives rise to increased adsorption and an enhanced sticking coefficient of adatoms. Studies on the influence of a buffer layer on the morphology of uncapped dots showed that the shape and size of the dots are sensitive to the thickness of the buffer layer. In some case a corrugated buffer surface resulted, which introduced order in the arrangement of the dots, which formed preferentially inside the troughs. An increase in the V/III ratio from 1.0 to 3.0 was found to reduce the areal density of the QDs, while an analysis of the diameter histograms showed a narrowing of the size distribution with an increase in V/III ratio. The larger size distribution at low V/III was ascribed to the increase in indium species and the increased indium adatom migration length. This leads to increased dot density and nucleation sites, and thus triggers an increase in the conversion of tiny QDs into thermodynamically more suitable larger dots via coalescence. However, as the V/III ratio increased, the number of indium adatoms available for growth on the surface reduced, which automatically led to a decrease in the migration length of indium species which is unfavourable for the production of nucleation sites and to a decrease in dot density. Low growth rates were found to be beneficial for the growth of a high density (~5×1010cm-2) of QDs. Photoluminescence (PL) analysis of the capped samples at low temperature (~10 K), using an excitation power of 2 mW, showed a PL peak at ∼732 meV. Upon an increase in laser power to 120 mW, a blue shift of ∼ 8 meV was noticed. This emission typically persisted up to 60–70 K. An increase in the number of InSb QD-layers, was observed to cause an increase in the luminescence spectral line width and a long-wavelength shift of the PL lines, together with an enhancement in the strength of the PL emission. However, high resolution transmission electron microscopy (HRTEM) of the capped dots revealed the formation of an InGaSb quantum well-like structure, ∼10 nm thick, which was responsible for the PL signal mentioned above. The absence of QDs in the capped sample was attributed to inter-diffusion of Ga and In during the deposition of the cap layer, giving rise to a quantum well (QW) instead of the intended QDs. The presence of threading dislocations and stacking faults were also observed in the TEM micrographs of the samples containing multilayers, which can account for the fast quenching of the PL emission with increasing temperature from these samples. Theoretical simulations of the band alignment, wave functions and energy levels were in good agreement with the data collected from the PL spectra of the samples.
  • Full Text:
  • Date Issued: 2018

Disputes, relationships and identity: analysing human-human conflicts as a basis for human-wildlife conflicts in the mid-Zambezi valley, northern Zimbabwe

  • Authors: Jani, Vincent
  • Date: 2018
  • Subjects: Environmental geography , Wildlife management Wildlife conservation Human-animal relationships
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10948/30364 , vital:30934
  • Description: This study analysed how human-human conflicts (HHCs) underlie human-wildlife conflicts (HWCs) in Chapoto Ward in the mid-Zambezi valley, northern Zimbabwe. The analytical framework entailed the use of the Levels of Conflict Model (LCM) – a model that seeks to expose different levels of conflict. To gain a rich understanding of the conflicts under investigation, a qualitative research design was employed with triangulation at its core in order to ensure the necessary quality and rigour of the findings. In this case, four different types of data were used, namely, in-depth interviews with heads of households, key informant interviews, focus group sessions, and document analysis. Thematic and content analysis were used to analyse the data which were classified into the following conflict levels: surface level disputes; an intermediate level involving ongoing conflictual relationships; and a deeper level of conflict rooted in identity. Three key findings were generated. Firstly, a substantial number of long-standing disputes were recorded during the ten-year period (2007-2016). Most of these disputes were not resolved because they had a long and complicated history which resulted in previous disputes resurfacing whenever a current one arose. Secondly, the history of unresolved conflict resulted in mistrust and failure to find common ground between the parties involved in the conflict. Lastly, the source of the disputes and unresolved conflicts was traced back to the identity level. This means that the antagonistic relationships among the stakeholders spilled over into the labelling and stigmatisation of all the groups involved in wildlife management. Thus, conflict between people and wildlife in Chapoto Ward was demonstrated to be a complex issue and underlain by HHC. These findings support the new line of thinking that HWC should not be viewed as simply a problem between people and wildlife but as a conflict between stakeholders with divergent views over wildlife management which manifests as HHC. Furthermore, the degree of polarisation between groups is substantial. In light of these findings, four major conclusions are drawn. Firstly, is the need to shift from narrowly focusing on the proximate conflicts between people and wildlife, to fully understand the complexity of conflict in order to arrive at solutions that successfully mitigate conflict between people and wildlife, and to address the underlying and deep-rooted conflict between stakeholders with divergent wildlife management goals. Secondly, the need for concerted efforts to ensure the involvement of all stakeholders, including women, in wildlife management and conservation by developing structures that enhance active participation of the local people in decision-making, v which promotes the success of conservation initiatives. Thirdly, the need to address the underlying and deep-rooted conflicts over wildlife management by building positive relationships and trust between stakeholders through the holding of regular capacity building workshops based on a more respectful and inclusive process. Fourthly, is the need to consider the interests of both ethnic groups, namely the Doma and the Chikunda by gathering information on the preferences of the identity groups in order to increase cooperation among them. Overall, the thesis introduces a new lens through which one can clearly understand the complexity of the conflict between people and wildlife.
  • Full Text:
  • Date Issued: 2018

Effects of polymerisation conditions on the mechanism and properties of furfuryl alcohol resin

  • Authors: Iroegbu, Austine Ofondu
  • Date: 2018
  • Subjects: Polymerization , Polyethylene
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/30386 , vital:30937
  • Description: The purpose of this study was to do a comparative investigation on the acid- and heat catalysed polymerisation and resinification of furfuryl alcohol and the effects of these polymerisation conditions on the mechanism, morphology, molecular weight and thermal properties of the polyfurfuryl alcohol resins. The formation of furfuryl alcohol polymers was confirmed using size exclusion chromatography (SEC); the synthesised polymer resins were investigated using Fourier transform infrared spectroscopy (FTIR,), scanning electron microscopy (SEM) and Thermogravimetric analysis (TGA). The effects of polymerisation conditions on the mechanism of polyfurfuryl alcohol polymerisation was a major focus of this study. The obtained results confirm that the surface topology, mechanism of polymerisation, thermal behaviour and molecular weights of polyfurfuryl alcohol polymer resins are dependent on the polymerisation condition. The acid and heat catalysed polyfurfuryl alcohol resin polymers presented interesting and promising results.
  • Full Text:
  • Date Issued: 2018

Electrospinning of carbon nanofibers for investigating the behaviour of lead electrodeposits on the carbon surface

  • Authors: Madikane, Zipporah Kayakazi
  • Date: 2018
  • Subjects: Materials science , Nanotechnology Nanostructured materials
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/31622 , vital:31629
  • Description: Over the years, the lead acid battery’s performance in modern vehicles has improved considerably to adapt to the new demands of vehicle electronics and start-stop applications. Although vehicles are valuable for commuting, their high volume of usage has resulted in an increase of fuel prices and emitted carbon dioxide (CO2). Due to the drastic global warming concerns, vehicle manufactures have been pressured into developing a variety of hybrid electric vehicles (HEV) that would reduce their fuel consumption and thereby reduced CO2 emission. The HEVs construction requires the implementation of advanced battery systems that operate under high rate partial state of charge (HRPSoC) conditions. During battery’s discharge, the Pb contained on the negative plate is oxidised to insulating PbSO4 crystals. When the battery is charged, the PbSO4 is reduced back to Pb. With prolonged use at HRPSoC, the battery undergoes an irreversible process wherein small PbSO4 crystallites dissolve and precipitate into large passivating PbSO4 crystals that accumulate as a dense layer on the surface of the negative plate. This layer restricts the diffusion of the H2SO4 electrolyte into the reaction sites for further reactions, resulting in the battery to fail prematurely. Research has shown that the inclusion of appropriate carbon materials on the negative active material (NAM) improves the performance of the batteries in HRPSoC cycling. This study looked at the making of some of the carbon-based additives by using relatively cheap materials such as polyvinyl alcohol (PVA) polymer with a sucrose blend in ratios of 75:25, 50:50 and 25:75, respectively. The blended materials were electrospun into PVA/Sucrose nanofibers. These were further stabilised by iodine and carbonised at 500 °C in a tube furnace. The properties of the carbon fibres were investigated by a number of analytical techniques such as TGA, DSC, XRD, BET, FTIR and SEM. The obtained carbon fibre surfaces were further electroplated with Pb in order to investigate the chemical bonding, the relationship between the carbon-based material interface and the Pb was investigated by SEM and CV techniques. The results of the study demonstrated that the varied ratios of the PVA/Sucrose nanofibers influenced the differences in their respective chemical and physical properties. Thermal analysis demonstrated that at approximately 500 °C, the final residue of the PVA/Sucrose nanofibers decreased as the sucrose content decreased. iii Carbonisation of the nanofibers was confirmed by the structural changes corresponding to the disappearance of the major bonds of PVA and sucrose materials, as well as by the appearance of C=C stretches. Carbonisation was also confirmed by the XRD diffractogram that demonstrated two broad amorphous peaks that corresponded to the planes of the graphite structure. The broadness of the peaks confirmed the amorphous nature of the carbon fibres. The morphological studies demonstrated that upon blending PVA with increasing quantities of sucrose, the uniformity of the fibres was altered into beaded fibrous structures with large diameters due to the increased viscosity of the electrospinning solution. The behaviour of the Pb deposits on the carbon surfaces was influenced by the high quantity of PVA present on the blend and the fibrous structure of the carbonised material. The Pb had high affinity towards the fibrous carbon derived from 75:25 as it deposited widely across the surface. Whereas, the absence of Pb deposits on the surface of the carbon derived from the 25:75 ratio was an indication that the high sucrose content and the bulky non-fibrous structure hindered the electrodeposition. The electrochemical study findings demonstrated that the bare Pb electrode had two distinct current peaks corresponding to the anodic (discharge) and cathodic (charge) reactions of Pb/PbSO4. Upon the inclusion of the electrospun carbon materials on the Pb electrode, the intensities of the anodic and cathodic peaks were reduced. Implying that none of the carbon materials enhanced the electrochemical redox reactions of the Pb/PbSO4 couple in the H2SO4 electrolyte.
  • Full Text:
  • Date Issued: 2018

Energy maximisation strategies of different African herbivores in a fire dominated and nutrient poor grassland ecosystem

  • Authors: Brooke, Christopher
  • Date: 2018
  • Subjects: Grassland ecology -- South Africa -- Eastern Cape , Animals -- Food -- South Africa -- Eastern Cape , Herbivores -- Ecology -- South Africa -- Eastern Cape , Fire ecology -- South Africa -- Eastern Cape
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/21961 , vital:29807
  • Description: Fire and herbivory are both major drivers in grassland ecosystems throughout the world. Although these two driving forces act independently from one another the relationship between fire and herbivory may be more significant than either acting on their own. Heterogeneity within the landscape as a result of fire results in herbivores having to adapt their behaviour in space and time. My research focussed on 1) characterising the fire regime on Mkambati Nature Reserve (hereafter Mkambati) and 2) determining the foraging choices and energy maximisation principles displayed by herbivores in relation to the biomass of vegetation and post fire vegetation age. Fire regimes were characterised between 2007-2016 in the low nutrient coastal grasslands of Mkambati in terms of fire season, seasonality of fire-prone weather conditions, fire return interval (FRI) and influence of poaching-related ignitions. Based on these results I then assessed foraging choices in terms of energy maximisation of four large herbivore species. I explored what energy maximisation strategy was employed, i.e. maximisation of daily digestible energy (DDE) (recently burnt low biomass vegetation) or instantaneous digestible energy (IDE) (older high biomass vegetation), by herbivore species with different morpho-physiological traits. Common reedbuck (Redunca arundinum), red hartebeest (Alcelaphus buselaphus subsp. caama), zebra (Equus quagga) and eland (Tragelaphus oryx subsp. oryx) were fitted with GPS satellite tracking collars, and hourly GPS locations (observed) were taken between 2008 and 2016. Using mixed effects models, I compared observed and an associated set of random locations to determine the energy maximisation strategy employed by each species. Our results indicated that fires were concentrated in winter when monthly fire danger weather (FDI) was highest. The mean FRI at Mkambati was <3 years, but varied according to vegetation type, and whether censoring (for open ended FRIs) was applied to estimate mean FRIs. Poachers, with the intention of attracting ungulates, are an important source of ignition at Mkambati. Accordingly FRIs were shorter (approximately 2 years) in areas within 3 km of likely poacher entry points. Although all fires recorded at Mkambati during the study period were of anthropogenic origin, mean FRI still fell within the natural range reported for interior grasslands in South Africa. Based on these findings, underpinned by the fire regime information, I showed that red hartebeest and zebra maximised DDE inside and outside of fire seasons and frequently foraged in low biomass recently burnt grasslands. Eland generally favoured areas where they could maximise IDE outside of the fire season, however during the fire season they switched strategy to maximise DDE. Reedbuck did not maximise IDE or DDE at the same scale (patch scale) as the other species, but at a landscape (broader) scale they maximised both IDE and DDE. Through this research I have shown how regular fire affects the foraging and energy maximisation behaviour of large African herbivores and how morpho-physiological traits affect these decisions. In response to these results I recommend that the management of Mkambati implement a focused monitoring program comparing the frequently and less frequently burnt areas of the reserve in order to understand the complex effects of anthropogenic fire and its subsequent effects on the biota of Mkambati.
  • Full Text:
  • Date Issued: 2018

Environmental management of wetlands on an urban periphery: the case of Bay West

  • Authors: Domoney, Nicola Leah
  • Date: 2018
  • Subjects: Wetland management -- South Africa -- Nelson Mandela Bay Municipality , Remote sensing Chlorophyll
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10948/30854 , vital:31183
  • Description: South Africa is a semi-arid country and thus depends on sound management of its water resources. Wetlands, despite their importance to water resource storage and water quality, among their other ecological and social significance, remain the most threatened of South Africa’s ecosystems. One of their greatest threats is encroachment by urbanisation. This occurs because wetlands, and especially ephemeral urban periphery wetlands, are overlooked. This study’s main objective was to determine the water quality and health of the wetlands adjacent to the newly established Bay West development on the western urban periphery of Nelson Mandela Bay. Wetlands are difficult to access and it is time-consuming to assess them. Remote sensing, however, overcomes this challenge and is cost-effective and time-considerate. It was the aim of this study to assess the health of the peri-urban wetlands on the Bay West periphery in order to formulate an appropriate environmental management plan, and remote sensing was tested as an effective method for wetland health management. It was found that the wetlands closer to the urban residential area (Sherwood suburb) were far more impacted than the wetlands nearer to Bay West Mall. Wetlands Six to Eight were higher in all parameters of pH, total dissolved solutes (TDS), salinity, conductivity and chlorophyll a concentration than Wetlands One to Five located further away from the urban area. A correlation with distance away from the urban area found a strong inverse relationship with between distance and the water quality factor, yielding a correlation coefficient of (<-0.7) in 2017 and (<-0.9) in 2018 with regard to TDS, salinity and conductivity. This, therefore, suggests that the wetlands’ health deteriorates towards the urban area. TDS, salinity, pH and conductivity correlate highly with chlorophyll a concentration at (>0.70). There was significant difference in pH in the year 2017 between the Bay West wetlands and the reference wetland (p<0.05; df=19; f= 3.56; n=3) and in 2018 (p<0.01; df=22; f= 8.90; n=3). No significant difference was found between the wetlands for dissolved oxygen. TDS between the wetlands was found to be significantly different in the year 2017 (p<0.01; df=23; f= 44.16; n=3) and 2018 (p<0.05; df=22; f=2.62; n=3), where conductivity and salinity returned the same p value for 2017 and 2018 as TDS respectively. There was a significant difference in chlorophyll a between the Bay West wetlands in 2017 (p<0.05; df=20; f=3.29; n=3) and Wetland Seven measured eutrophic at 22.45 mg/L-1. Remote sensing red band values and the field sample absorption values were highly correlated at R2= 0.5. Chlorophyll a content of wetland water correlated with NDVI data at R2= 0.6. Thus, remote sensing proved to be a successful estimator for wetlands health analysis and a proxy for wetland management. These results yielded an environmental management plan where monitoring water quality via chlorophyll a indicated health levels of the wetlands via trophic state.
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  • Date Issued: 2018

Estuarine microalgal bloom dynamics at multiple temporal scales

  • Authors: Lemley, Daniel Alan
  • Date: 2018
  • Subjects: Ecological integrity -- South Africa , Phytoplankton populations -- South Africa , Estuarine ecology -- South Africa , Freshwater algae -- Ecology -- South Africa
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10948/21044 , vital:29431
  • Description: Microalgal communities sustain the ecological functioning of estuarine ecosystems through the provision of numerous ecosystem services. As such, gaining an understanding of the processes that govern spatio-temporal patterns of phytoplankton communities is key to the effective management of these ecosystems. However, detailed investigations of estuarine phytoplankton dynamics, and particularly harmful algal blooms (HAB), are largely absent in South Africa. Therefore, geared at addressing these knowledge gaps, this study was initiated to elucidate the processes shaping estuarine phytoplankton bloom dynamics at multiple temporal scales. Initially, five permanently open estuaries, each with varying types and levels of anthropogenic pressures, were selected to test the efficacy of an estuarine eutrophic condition index to flow variability (‘Annual’ study). Results from this study highlighted the sensitivity of the proposed index to environmental perturbations (e.g. flood events), whilst also identifying freshwater inflow variability and anthropogenic disturbance as the key processes shaping microalgal responses at an annual scale. Next, the agriculturally-influenced Gamtoos and Sundays estuaries were further investigated to elucidate the role of natural and anthropogenic drivers in defining microalgal responses (‘Seasonal’ study). Despite similarities in nutrient input and temperature patterns, phytoplankton bloom conditions (> 20 μg Chl-a l-1) were episodic and flow-dependent in the Gamtoos Estuary, whilst those in the Sundays Estuary were persistent and seasonal. Related to its reduced hydrodynamic variability – i.e. consistent nutrient-rich baseflows and reduced propensity for flushing events – persistent undesirable disturbances were highlighted for the Sundays Estuary, including: summer bottom-water hypoxia (< 2 mg l-1) and exceptional proliferations (> 550 μg Chl-a l-1) of two HAB species (Heterosigma akashiwo and Heterocapsa rotundata). Finally, fine-scale ecological research was undertaken in the Sundays Estuary to identify the processes – abiotic and biotic – that facilitate HABs (‘Daily’ and ‘Hourly’ studies). Findings from the ‘Daily’ study, identified inorganic nutrient availability (i.e. nitrate and phosphate) and mesohaline conditions (ca. 10) as the key bottom-up controls influencing the magnitude and duration of spring/summer phytoplankton blooms. Additionally, bottom-water hypoxia was explicitly linked to the decay of a single HAB species. During the ‘Hourly’ investigation, four known HAB-forming species were recorded at bloom concentrations. Model results indicated that variability in temperature, salinity profiles and nitrate concentrations were significant in facilitating the occurrence of HAB species. Finally, local biotic interactions (e.g. interspecies competition, diel vertical migration and mixotrophy) were recognized as key mechanisms shaping phytoplankton communities. The persistent occurrence of HABs is a new feature in South African estuaries and continued research is needed to recommend management responses. Ultimately, this research highlights the multitude of processes at work shaping phytoplankton variability in estuaries. From a broad perspective (i.e. seasonal and annual), processes such as freshwater inflow regimes, degree of anthropogenic disturbance, as well as seasonal temperature and nutrient supply patterns are the key processes. At a more refined scale (i.e. hourly and daily), local processes including salinity preferences, nutrient availability, diel light cycles and internal biotic interactions are the key drivers organising phytoplankton dynamics. Given the potentially severe ecological consequences of disrupting natural phytoplankton dynamics (e.g. HABs), an element of ‘unpredictability’ should be restored to the hydrological and chemical makeup of highly-regulated estuaries to prevent the continued exacerbation of eutrophic symptoms.
  • Full Text:
  • Date Issued: 2018

Extraction of diallyl sulfides and other similar compounds from tulbaghia violacea, a South African plant, for potential use as devulcanizing agents

  • Authors: Sonti, Thembela Celia
  • Date: 2018
  • Subjects: Violaceae -- South Africa , Plant extracts Plant products Traditional medicine
  • Language: English
  • Type: Thesis , Masters , MTech
  • Identifier: http://hdl.handle.net/10948/23338 , vital:30533
  • Description: Tulbaghia violacea is a plant that is commonly used for traditional medicine in the Eastern Cape and Kwa-Zulu Natal Provinces of South Africa for treatment of ailments, such as fever, colds, asthma, tuberculosis, stomach-ache and cancer of the oesophagus. This plant has been found to be rich in sulfur-containing compounds that may display good potential as devulcanizing agents. Commonly used chemical devulcanizing agents are disulfides, such as diphenyl disulfide. These have been found to be relatively expensive compared to other methods of devulcanization. This study aimed to show that the sulfur- containing compounds extracted from the readily available Tulbaghia violacea plant can be used as devulcanizing agents. The presence of sulfur-containing compounds in the plant was positively identified by qualitative phytochemical analysis. Extraction of sulfur-containing compounds from the bulk plant material was successfully performed using the Soxhlet extraction method with a 2% 2-propanol in n-hexane solvent mixture. There was a positive identification of sulfur compounds in the crude extracts of the bulbs, roots and leaves. Diallyl disulfides (DADS) extracted from the plant were successfully quantified using normal phase high-performance liquid chromatography (HPLC). The results showed that in a bulb crude extract of 9.89 mg/mL concentration, there was 7.74X10-2 mg/mL concentration of DADS. In the roots crude extract of 10.26 mg/mL concentration, there was 2.93X10-2 mg/mL concentration of DADS; and in leaves crude extract of 10.47 mg/mL concentration, there was 3.69X10-2 mg/mL concentration of DADS. The crude extracts were evaluated for their effectiveness as devulcanizing agents by reacting them with vulcanized 2,3-dimethyl-2-butene (TME), which was used as a model compound. A reverse phase HPLC method was used to identify crosslink species formed during vulcanization, and to monitor the broken crosslinks during devulcanization. It was observed that the di- and polysulfidic crosslinked vulcanized model compound species were not present in the devulcanized product. Furthermore monosulfidic crosslink species, a common end species of devulcanization, were observed to increase in concentration from the HPLC chromatograms. It was observed that the extracts from the bulbs and leaves of Tulbaghia violacea were more effective than the extract from the roots when applied to the vulcanized model compound. This study demonstrates that Tulbaghia violacea can be used as alternatives to petroleum-derived chemicals as devulcanizing agents.
  • Full Text:
  • Date Issued: 2018
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