Developing an attractant for monitoring fruit-feeding moths in citrus orchards
- Authors: Goddard, Mathew Keith
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2981 , vital:20349
- Description: Fruit-piercing moths are a sporadic pest of citrus, especially in the Eastern Cape Province of South Africa, where the adults can cause significant damage in outbreak years. Currently the only way in which to successfully control fruit-feeding moths within the orchards is the use of repellent lights. However, growers confuse fruit-piercing moths with fruit-sucking moths that don‘t cause primary damage, and there is no way of monitoring which moth species are attacking the fruit in the orchards during the night. In a previous study, banana was shown to be the most attractive bait for a variety of fruit-feeding moth species. Therefore the aim of this study was to determine the population dynamics of fruit-feeding moths develop a cost-effective alternative to the use of fresh banana as a bait for fruit-piercing moths. Fresh banana was compared to nine alternative synthetic attractants, frozen banana and a control under field conditions in several orchards in the Eastern Cape Province. Once again, banana was shown to be the most attractive bait. Some 23 species of fruit-feeding moth species were sampled in the traps, but there was only two fruit-piercing species, Serrodes partita (Fabricius) (Lepidoptera: Noctuidae) and Eudocima sp. Surprisingly S. partita, which was thought to be the main pest, comprised only 6.9% of trap catches. Serrodes partita, is a sporadic pest, only becoming problematic every five to 10 years after good rainfall in the Little Karoo region that causes flushes of their larval host, wild plum, Pappea capensis (Ecklon and Zeyher). During these outbreaks, damage to fruit can range from 70 to 90% and this is especially so for soft skinned citrus. A study on the morphology of the proboscis confirmed that only two species of fruit-piercing moths were present. Trap catches over three citrus growing seasons was linked to fruit damage found within several orchards. Once again fruit-piercing moth damage was relatively low in comparison to other types of damage such as mechanical and undefined damage. There was a very weak correlation between S. partita trap catches and damage, but generally damage was recorded two to three weeks after a peak in S. partita trap catches. Climatic conditions were also recorded and compared to weekly trap catches of S. partita, and while temperature and wind direction had no influence on moth populations, precipitation in the orchards was weakly correlated with trap catches. This study has shown that in non-outbreak seasons, the main fruit-piercing moth, S. partita comprises a small percentage of fruit-feeding moths in citrus orchards, but that growers are unable to determine the difference between fruit-piercing species and the harmless fruit-sucking species. Further fresh banana remains the best method for attracting fruit-piecing moths to traps, but this is not cost effective and thus a commercially viable protocol for monitoring these species remains elusive.
- Full Text:
- Date Issued: 2016
- Authors: Goddard, Mathew Keith
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2981 , vital:20349
- Description: Fruit-piercing moths are a sporadic pest of citrus, especially in the Eastern Cape Province of South Africa, where the adults can cause significant damage in outbreak years. Currently the only way in which to successfully control fruit-feeding moths within the orchards is the use of repellent lights. However, growers confuse fruit-piercing moths with fruit-sucking moths that don‘t cause primary damage, and there is no way of monitoring which moth species are attacking the fruit in the orchards during the night. In a previous study, banana was shown to be the most attractive bait for a variety of fruit-feeding moth species. Therefore the aim of this study was to determine the population dynamics of fruit-feeding moths develop a cost-effective alternative to the use of fresh banana as a bait for fruit-piercing moths. Fresh banana was compared to nine alternative synthetic attractants, frozen banana and a control under field conditions in several orchards in the Eastern Cape Province. Once again, banana was shown to be the most attractive bait. Some 23 species of fruit-feeding moth species were sampled in the traps, but there was only two fruit-piercing species, Serrodes partita (Fabricius) (Lepidoptera: Noctuidae) and Eudocima sp. Surprisingly S. partita, which was thought to be the main pest, comprised only 6.9% of trap catches. Serrodes partita, is a sporadic pest, only becoming problematic every five to 10 years after good rainfall in the Little Karoo region that causes flushes of their larval host, wild plum, Pappea capensis (Ecklon and Zeyher). During these outbreaks, damage to fruit can range from 70 to 90% and this is especially so for soft skinned citrus. A study on the morphology of the proboscis confirmed that only two species of fruit-piercing moths were present. Trap catches over three citrus growing seasons was linked to fruit damage found within several orchards. Once again fruit-piercing moth damage was relatively low in comparison to other types of damage such as mechanical and undefined damage. There was a very weak correlation between S. partita trap catches and damage, but generally damage was recorded two to three weeks after a peak in S. partita trap catches. Climatic conditions were also recorded and compared to weekly trap catches of S. partita, and while temperature and wind direction had no influence on moth populations, precipitation in the orchards was weakly correlated with trap catches. This study has shown that in non-outbreak seasons, the main fruit-piercing moth, S. partita comprises a small percentage of fruit-feeding moths in citrus orchards, but that growers are unable to determine the difference between fruit-piercing species and the harmless fruit-sucking species. Further fresh banana remains the best method for attracting fruit-piecing moths to traps, but this is not cost effective and thus a commercially viable protocol for monitoring these species remains elusive.
- Full Text:
- Date Issued: 2016
Ecological engineering on rocky shores: grazing, predation, nutrient availability and their influence on epifaunal communities
- Authors: Ndhlovu, Aldwin
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3453 , vital:20500
- Description: “Ecosystem engineers modify, create/destroy habitat and directly/indirectly modulate availability of resources to other species by causing physical state changes to biotic and abiotic materials” (Jones et al, 1994, page 1). Previous studies have analysed top-down and bottom-up relationships to determine which form of regulation is key in controlling community composition. This study assessed the direct and indirect effects of top down and bottom up factors on the epifaunal communities of macro-algae. Epifauna are subject to the direct top-down effects of predation and bottom up effects of habitat availability. Habitat availability in turn experiences the direct top down effects of grazing and bottom up effects of nutrient availability due to upwelling. Grazing and upwelling may therefore have indirect effects on macro-algal epifauna. Four treatments (Procedural controls, Controls, Predator or Grazer exclusion) set out in a block design (n = 5) were monitored monthly for algal cover of the substratum for 12 months with the surface area of algal plants and epifaunal species composition and abundances assessed at the end of the experiment. The red alga Gelidium pristoides was selected as the ecosystem engineer as it is common, supports a diverse community of epiphytic animals and acts as a nursery for small epifaunal organisms. The experiment was run at two upwelling sites interspersed with two non-upwelling sites. Sites were separated on scales of 100km along approximately 500km of coastline. Dipping whole algae in dish washing liquid provided a strong relationship between their surface area and the weight of the film of dish washing liquid covering them. Surface area was strongly correlated to dry weight but neither surface area nor dry weight was correlated to algal cover of the substratum. Algal cover was influenced by the interactions of treatment with site (nested in upwelling) and upwelling. At all sites, treatments that allowed access to grazers, Grazer + and Control treatments, showed no significant differences and these two treatments had lower algal cover than Predator + and Closed treatments which did not differ from one another 3 [Grazer + = Control < Predator + = Closed]. A total of 44 epifaunal species were identified, with the predominant orders being Amphipoda and Isopoda. Primer results showed that only site had a significant effect on species composition, with sites that were further apart being more different. Site (nested in upwelling) had an effect on total epifaunal abundances when data were non-normalised. When total epifaunal abundances were normalised for algal cover of the substratum or algal surface area to provide density data, predation had no significant effect. Grazing did have a significant effect, but only when data were normalised to algal surface area, not cover, leading to the conclusion that indirect top-down factors through grazing of the sea weed are important in structuring epifaunal communities depending on how habitat availability is measured.
- Full Text:
- Date Issued: 2016
- Authors: Ndhlovu, Aldwin
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3453 , vital:20500
- Description: “Ecosystem engineers modify, create/destroy habitat and directly/indirectly modulate availability of resources to other species by causing physical state changes to biotic and abiotic materials” (Jones et al, 1994, page 1). Previous studies have analysed top-down and bottom-up relationships to determine which form of regulation is key in controlling community composition. This study assessed the direct and indirect effects of top down and bottom up factors on the epifaunal communities of macro-algae. Epifauna are subject to the direct top-down effects of predation and bottom up effects of habitat availability. Habitat availability in turn experiences the direct top down effects of grazing and bottom up effects of nutrient availability due to upwelling. Grazing and upwelling may therefore have indirect effects on macro-algal epifauna. Four treatments (Procedural controls, Controls, Predator or Grazer exclusion) set out in a block design (n = 5) were monitored monthly for algal cover of the substratum for 12 months with the surface area of algal plants and epifaunal species composition and abundances assessed at the end of the experiment. The red alga Gelidium pristoides was selected as the ecosystem engineer as it is common, supports a diverse community of epiphytic animals and acts as a nursery for small epifaunal organisms. The experiment was run at two upwelling sites interspersed with two non-upwelling sites. Sites were separated on scales of 100km along approximately 500km of coastline. Dipping whole algae in dish washing liquid provided a strong relationship between their surface area and the weight of the film of dish washing liquid covering them. Surface area was strongly correlated to dry weight but neither surface area nor dry weight was correlated to algal cover of the substratum. Algal cover was influenced by the interactions of treatment with site (nested in upwelling) and upwelling. At all sites, treatments that allowed access to grazers, Grazer + and Control treatments, showed no significant differences and these two treatments had lower algal cover than Predator + and Closed treatments which did not differ from one another 3 [Grazer + = Control < Predator + = Closed]. A total of 44 epifaunal species were identified, with the predominant orders being Amphipoda and Isopoda. Primer results showed that only site had a significant effect on species composition, with sites that were further apart being more different. Site (nested in upwelling) had an effect on total epifaunal abundances when data were non-normalised. When total epifaunal abundances were normalised for algal cover of the substratum or algal surface area to provide density data, predation had no significant effect. Grazing did have a significant effect, but only when data were normalised to algal surface area, not cover, leading to the conclusion that indirect top-down factors through grazing of the sea weed are important in structuring epifaunal communities depending on how habitat availability is measured.
- Full Text:
- Date Issued: 2016
Effects of the biocontrol agent, coelocephalapion camarae kissinger, galling on petiole tissues, plant growth and stored reserves in plant parts of two lantana camara L.(verbenaceae) varieties
- Authors: Kistensamy, Yoganambal
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3126 , vital:20372
- Description: The agent evaluated in this study, Coelocephalapion camarae Kissinger (Brentidae), a petiole galling apionid, was released against Lantana camara L. (Verbenaceae) in South Africa and has the potential to significantly contribute to the control of this noxious weed. An important aspect of evaluating the effectiveness of a biocontrol agent; include the understanding of the mechanism in which the biocontrol agent causes damage to the plant and the plant’s response to this damage. Another aspect that was considered in evaluating the effects of the apionid was the varietal differences that exist within the weedy L. camara complex. Larval feeding of C. camarae damaged the tissue in the petioles causing gall formation and this was quantified on two common South African L. camara varieties (017 and 018). Up to 100% of the vascular tissue (xylem and phloem) of effected petioles was eaten by larvae, 25 days after ovipostion in both the L. camara varieties, effectively severing the vascular connection from the leaves. The effect of feeding and galling by different population densities of C. camarae, on biomass and total soluble sugar and starch concentrations of different plant parts was measured on these two varieties during autumn, and compared to a similar study, done during summer. Relatively low galling percentages were achieved in the experiments of this study. Plant growth was less affected by apionid feeding at similar galling levels, as higher galling densities in these trials were similar to those at low exposures in trials by Baars (2002). The dry weights of all individual and combined plant parts for lantana variety 017 was less for both adult density exposures after 70 days compared to the weights of its controls, although not statistically significant at P>0.05 The opposite effect, though barely noticeable was recorded for lantana variety 018; here, the dry weights of individual plant parts and as whole plants weighed more in the plants exposed to both densities of weevil feeding and galling after 70 days, compared to its controls. Coelocephalapion camarae herbivory may thus be more effective in inflicting damage on some L. camara varieties compared to others. The effects of late season carbohydrate storage revealed that, from early- to mid-autumn starch concentrations increased significantly in stems of both L. camara varieties and L. camara var. 018 had larger starch reserves for winter. In L. camara var. 018 stems, starch increased 52 times and concentrations doubled in stems of L. camara var 017. The increase in the sugar and decrease in starch concentrations in leaves of plants of both varieties exposed to apionids in this study was attributed to a possible reduction of available nitrogen and phosphorus, due to apionid feeding, whilst starch was reallocated within the plants to stems and roots. The increase in starch concentrations in stems of plants that were exposed to apionids may have been expected, as compensation for herbivory has been associated with, increases in photosynthetic rates and the mobilization of stored resources. Herbivory by the apionid early in the growing season may be easily compensated for by L. camara as there are nutrient flushes experienced by plants that allows the maximum uptake of nutrients facilitating recovery, whereas later in the season plants suffer lower nutrient availability and don’t recover so readily. Both early and late in the season the accumulated effects of C. camarae feeding over time will undoubtedly decrease fitness of most lantana varieties.
- Full Text:
- Date Issued: 2016
- Authors: Kistensamy, Yoganambal
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3126 , vital:20372
- Description: The agent evaluated in this study, Coelocephalapion camarae Kissinger (Brentidae), a petiole galling apionid, was released against Lantana camara L. (Verbenaceae) in South Africa and has the potential to significantly contribute to the control of this noxious weed. An important aspect of evaluating the effectiveness of a biocontrol agent; include the understanding of the mechanism in which the biocontrol agent causes damage to the plant and the plant’s response to this damage. Another aspect that was considered in evaluating the effects of the apionid was the varietal differences that exist within the weedy L. camara complex. Larval feeding of C. camarae damaged the tissue in the petioles causing gall formation and this was quantified on two common South African L. camara varieties (017 and 018). Up to 100% of the vascular tissue (xylem and phloem) of effected petioles was eaten by larvae, 25 days after ovipostion in both the L. camara varieties, effectively severing the vascular connection from the leaves. The effect of feeding and galling by different population densities of C. camarae, on biomass and total soluble sugar and starch concentrations of different plant parts was measured on these two varieties during autumn, and compared to a similar study, done during summer. Relatively low galling percentages were achieved in the experiments of this study. Plant growth was less affected by apionid feeding at similar galling levels, as higher galling densities in these trials were similar to those at low exposures in trials by Baars (2002). The dry weights of all individual and combined plant parts for lantana variety 017 was less for both adult density exposures after 70 days compared to the weights of its controls, although not statistically significant at P>0.05 The opposite effect, though barely noticeable was recorded for lantana variety 018; here, the dry weights of individual plant parts and as whole plants weighed more in the plants exposed to both densities of weevil feeding and galling after 70 days, compared to its controls. Coelocephalapion camarae herbivory may thus be more effective in inflicting damage on some L. camara varieties compared to others. The effects of late season carbohydrate storage revealed that, from early- to mid-autumn starch concentrations increased significantly in stems of both L. camara varieties and L. camara var. 018 had larger starch reserves for winter. In L. camara var. 018 stems, starch increased 52 times and concentrations doubled in stems of L. camara var 017. The increase in the sugar and decrease in starch concentrations in leaves of plants of both varieties exposed to apionids in this study was attributed to a possible reduction of available nitrogen and phosphorus, due to apionid feeding, whilst starch was reallocated within the plants to stems and roots. The increase in starch concentrations in stems of plants that were exposed to apionids may have been expected, as compensation for herbivory has been associated with, increases in photosynthetic rates and the mobilization of stored resources. Herbivory by the apionid early in the growing season may be easily compensated for by L. camara as there are nutrient flushes experienced by plants that allows the maximum uptake of nutrients facilitating recovery, whereas later in the season plants suffer lower nutrient availability and don’t recover so readily. Both early and late in the season the accumulated effects of C. camarae feeding over time will undoubtedly decrease fitness of most lantana varieties.
- Full Text:
- Date Issued: 2016
Field evaluation of the use of select entomopathogenic fungal isolates as microbial control agents of the soil-dwelling life stages of a key South African citrus pest, Thaumatotibia leucotreta (Meyrick) (Lepidoptera: Tortricidae)
- Authors: Coombes, Candice Anne
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/507 , vital:19965
- Description: The control of false codling moth (FCM), Thaumatotibia leucotreta (Meyrick, 1912) (Lepidoptera: Tortricidae), in citrus orchards is strongly reliant on the use of integrated pest management as key export markets impose stringent chemical restrictions on exported fruit and have a strict no entry policy towards this phytosanitary pest. Most current, registered control methods target the above-ground life stages of FCM, not the soil-dwelling life stages. As such, entomopathogenic fungi which are ubiquitous, percutaneously infective soil-borne microbes that have been used successfully as control agents worldwide, present ideal candidates as additional control agents. Following an initial identification of 62 fungal entomopathogens isolated from soil collected from citrus orchards in the Eastern Cape Province, South Africa, further laboratory research has highlighted three isolates as having the greatest control potential against FCM subterranean life stages: Metarhizium anisopliae G 11 3 L6 (Ma1), M. anisopliae FCM Ar 23 B3 (Ma2) and Beauveria bassiana G Ar 17 B3 (Bb1). These isolates are capable of causing above 80% laboratory-induced mycosis of FCM fifth instars. Whether this level of efficacy was obtainable under sub-optimal and fluctuating field conditions was unknown. Thus, this thesis aimed to address the following issues with regards to the three most laboratory-virulent fungal isolates: field efficacy, field persistence, optimal application rate, application timing, environmental dependency, compatibility with fungicides and the use of different wetting agents to promote field efficacy. Following fungal application to one hectare treatment blocks in the field, FCM infestation within fruit was reduced by 28.3% to 81.7%. Isolate Bb1 performed best under moderate to high soil moisture whilst Ma2 was more effective under low soil moisture conditions. All isolates, with the exception of Ma2 at one site, were recorded in the soil five months post-application. None of the wetting agents tested were found to be highly toxic to fungal germination and similar physical suspension characteristics were observed. Fungicide toxicity varied amongst isolates and test conditions. However, only Dithane (a.i. mancozeb) was considered incompatible with isolate Ma2. The implication of these results and the way forward is discussed. This study is the first report of the field efficacy of three laboratory-virulent fungal isolates applied to the soil of conventional citrus orchards against FCM soil-dwelling life stages. As such, it provides a foundation on which future research can build to ensure the development and commercialisation of a cost-effective and consistently reliable product.
- Full Text:
- Date Issued: 2016
- Authors: Coombes, Candice Anne
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/507 , vital:19965
- Description: The control of false codling moth (FCM), Thaumatotibia leucotreta (Meyrick, 1912) (Lepidoptera: Tortricidae), in citrus orchards is strongly reliant on the use of integrated pest management as key export markets impose stringent chemical restrictions on exported fruit and have a strict no entry policy towards this phytosanitary pest. Most current, registered control methods target the above-ground life stages of FCM, not the soil-dwelling life stages. As such, entomopathogenic fungi which are ubiquitous, percutaneously infective soil-borne microbes that have been used successfully as control agents worldwide, present ideal candidates as additional control agents. Following an initial identification of 62 fungal entomopathogens isolated from soil collected from citrus orchards in the Eastern Cape Province, South Africa, further laboratory research has highlighted three isolates as having the greatest control potential against FCM subterranean life stages: Metarhizium anisopliae G 11 3 L6 (Ma1), M. anisopliae FCM Ar 23 B3 (Ma2) and Beauveria bassiana G Ar 17 B3 (Bb1). These isolates are capable of causing above 80% laboratory-induced mycosis of FCM fifth instars. Whether this level of efficacy was obtainable under sub-optimal and fluctuating field conditions was unknown. Thus, this thesis aimed to address the following issues with regards to the three most laboratory-virulent fungal isolates: field efficacy, field persistence, optimal application rate, application timing, environmental dependency, compatibility with fungicides and the use of different wetting agents to promote field efficacy. Following fungal application to one hectare treatment blocks in the field, FCM infestation within fruit was reduced by 28.3% to 81.7%. Isolate Bb1 performed best under moderate to high soil moisture whilst Ma2 was more effective under low soil moisture conditions. All isolates, with the exception of Ma2 at one site, were recorded in the soil five months post-application. None of the wetting agents tested were found to be highly toxic to fungal germination and similar physical suspension characteristics were observed. Fungicide toxicity varied amongst isolates and test conditions. However, only Dithane (a.i. mancozeb) was considered incompatible with isolate Ma2. The implication of these results and the way forward is discussed. This study is the first report of the field efficacy of three laboratory-virulent fungal isolates applied to the soil of conventional citrus orchards against FCM soil-dwelling life stages. As such, it provides a foundation on which future research can build to ensure the development and commercialisation of a cost-effective and consistently reliable product.
- Full Text:
- Date Issued: 2016
Geology, regional diamond exploration and diamond provenance of the proterozoic diamondiferous Umkondo conglomerates, Umkondo group, eastern Zimbabwe
- Authors: Zhou, Takawira
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3598 , vital:20528
- Description: The Umkondo Sedimentary Basin in eastern Zimbabwe has been studied by various individuals and organizations since 1901. Their interest had been in finding limestone and beryl and base metal deposits, especially copper, iron and uranium, but these occurrences had proved to be of no economic value (Watson, 1969). The recent discovery of placer diamonds within the Proterozoic basal conglomerates of the Umkondo Sedimentary Basin has now attracted worldwide interest in the basin’s diamond economic potential, in understanding of the geology, and the diamond provenance of the Umkondo conglomerates. The Umkondo Sedimentary Basin basal conglomerate placer deposit might narrowly be defined as a mega-placer because of its sheer large size and high grades, especially on the 70,000 hectare western margin diamond dispersion halo where alluvial diamonds are being mined. Bluck, et al., (2005, pp 213) defines a diamond mega-placer as: . . . a number of linked deposits that are a result of one or a continuous process of transportation and deposition and holds or have held at least >= 50 million carats at >= 95% gem quality, for example, the Orange-Vaal dispersal, off the Kaapvaal craton in South Africa. On craton placers are residual, and transient placers are eroded and deposited into the exit drainage, while terminal placers, the final depositories of diamonds with the highest chances of being mega-placers are deposited into terminal basins like oceans and foreland basins. Though data is limited at the moment, the Umkondo conglomerates caratage is likely to run into hundreds of millions of carats, with a diamond gem content of between twenty and twenty-five percent, as is indicated from recent diamond production data. The greater part of the Umkondo diamonds are likely to be lodged beneath the deep gravels of the Middle and Lower Save River basin, because small remnant tilted mountain blocks and inselbergs forming the caps of hills are what remains of the host conglomerate on the western margin of the Umkondo Basin. Areas to be examined in this document will be the geology; the mode of formation of the Umkondo basin and its sedimentary system; the regional kimberlite exploration around the basin; and diamond production in the Marange diamond field, in order to come up with indications of the provenance of the diamonds within the Umkondo conglomerates. The kimberlite clusters in and around the Umkondo sedimentary basin have all proved to be barren or only nominally diamondiferous and that the kimberlites are between 200Ma and 500Ma and thus much younger than the greater than 1.1Ga Umkondo diamondiferous conglomerates. Studies so far undertaken have not managed to point to the origin, or provenance, of the Umkondo or Marange diamonds, which were discovered on the western edge of the Umkondo Basin and in the east of the basin below the Chimanimani Mountains along the Haroni River. This paper is an attempt to clear up some of the misconceptions surrounding the Marange diamond deposit and to raise interest in the urgent rquirement to study and understand the Umkondo Basin and the origin of its diamonds. The only meaningful studies on diamond occurrence and diamond exploration of the basin were undertaken from 1996 to 2006 by Kimberlitic Searches Zimbabwe (Pvt) Ltd, the then Zimbabwe kimberlite exploration arm of De Beers, Zimbabwe, in their quest to find kimberlites, which were thought to be related to the Umkondo alluvial diamond deposit. As will be shown in the following chapters, many of the discovered kimberlites range from very low grade to non-diamondiferous, and are much younger than the Umkondo conglomerates, whose diamonds are in turn a great deal older. Thus the basic question concerning the origin or provenance of the Umkondo placer diamonds still remains unresolved. Because of the sheer size of the basin, modern, wide-area-coverage, geophysical exploration methods become appropriate to effectively generate diamond potential targets for further examination. This document will attempt to collate various data available to paint a true picture of the state of exploration within the Umkondo Basin.
- Full Text:
- Date Issued: 2016
- Authors: Zhou, Takawira
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/3598 , vital:20528
- Description: The Umkondo Sedimentary Basin in eastern Zimbabwe has been studied by various individuals and organizations since 1901. Their interest had been in finding limestone and beryl and base metal deposits, especially copper, iron and uranium, but these occurrences had proved to be of no economic value (Watson, 1969). The recent discovery of placer diamonds within the Proterozoic basal conglomerates of the Umkondo Sedimentary Basin has now attracted worldwide interest in the basin’s diamond economic potential, in understanding of the geology, and the diamond provenance of the Umkondo conglomerates. The Umkondo Sedimentary Basin basal conglomerate placer deposit might narrowly be defined as a mega-placer because of its sheer large size and high grades, especially on the 70,000 hectare western margin diamond dispersion halo where alluvial diamonds are being mined. Bluck, et al., (2005, pp 213) defines a diamond mega-placer as: . . . a number of linked deposits that are a result of one or a continuous process of transportation and deposition and holds or have held at least >= 50 million carats at >= 95% gem quality, for example, the Orange-Vaal dispersal, off the Kaapvaal craton in South Africa. On craton placers are residual, and transient placers are eroded and deposited into the exit drainage, while terminal placers, the final depositories of diamonds with the highest chances of being mega-placers are deposited into terminal basins like oceans and foreland basins. Though data is limited at the moment, the Umkondo conglomerates caratage is likely to run into hundreds of millions of carats, with a diamond gem content of between twenty and twenty-five percent, as is indicated from recent diamond production data. The greater part of the Umkondo diamonds are likely to be lodged beneath the deep gravels of the Middle and Lower Save River basin, because small remnant tilted mountain blocks and inselbergs forming the caps of hills are what remains of the host conglomerate on the western margin of the Umkondo Basin. Areas to be examined in this document will be the geology; the mode of formation of the Umkondo basin and its sedimentary system; the regional kimberlite exploration around the basin; and diamond production in the Marange diamond field, in order to come up with indications of the provenance of the diamonds within the Umkondo conglomerates. The kimberlite clusters in and around the Umkondo sedimentary basin have all proved to be barren or only nominally diamondiferous and that the kimberlites are between 200Ma and 500Ma and thus much younger than the greater than 1.1Ga Umkondo diamondiferous conglomerates. Studies so far undertaken have not managed to point to the origin, or provenance, of the Umkondo or Marange diamonds, which were discovered on the western edge of the Umkondo Basin and in the east of the basin below the Chimanimani Mountains along the Haroni River. This paper is an attempt to clear up some of the misconceptions surrounding the Marange diamond deposit and to raise interest in the urgent rquirement to study and understand the Umkondo Basin and the origin of its diamonds. The only meaningful studies on diamond occurrence and diamond exploration of the basin were undertaken from 1996 to 2006 by Kimberlitic Searches Zimbabwe (Pvt) Ltd, the then Zimbabwe kimberlite exploration arm of De Beers, Zimbabwe, in their quest to find kimberlites, which were thought to be related to the Umkondo alluvial diamond deposit. As will be shown in the following chapters, many of the discovered kimberlites range from very low grade to non-diamondiferous, and are much younger than the Umkondo conglomerates, whose diamonds are in turn a great deal older. Thus the basic question concerning the origin or provenance of the Umkondo placer diamonds still remains unresolved. Because of the sheer size of the basin, modern, wide-area-coverage, geophysical exploration methods become appropriate to effectively generate diamond potential targets for further examination. This document will attempt to collate various data available to paint a true picture of the state of exploration within the Umkondo Basin.
- Full Text:
- Date Issued: 2016
Land-use effects on mammal communities in the Fish-Kowie corridor, Eastern Cape, South Africa, with particular reference to carnivores
- Authors: Kok, Armand du Preez
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/561 , vital:19970
- Description: Human population growth is causing an increase in habitat transformation on a global scale, and this transformation is driven by changes in land-use practices. One consequence of habitat transformation is the negative effect it can have on mammal communities, especially carnivores. Carnivores are important components of ecosystems as they play an essential structuring role, but also often come into conflict with people. I studied the impact of land-use on mammalian diversity, the attitudes of landowners/managers towards carnivores, the distribution of carnivores, and the interactions among carnivore species in the Fish-Kowie corridor (FKC), an area of conservation concern, in the Eastern Cape, South Africa. Livestock and game farming are the two dominant land-use types in the FKC. Carnivore distribution data were collected between 2012 and 2014 using a robust camera trap survey that consisted of 432 camera stations (216 on livestock and 216 on game farms). In addition, the attitudes of 55 landowners/managers were assessed using semi- structured questionnaire interviews that were conducted in person. My results revealed that mammal diversity was similar on the two land-use types. However, individual species differed in their distribution on the two land-use types. In general, both livestock and game farmers had negative attitudes towards carnivores in the FKC, due to their depredation of valuable livestock and game species. Black-backed jackals (Canis mesomelas), caracals (Caracal caracal), leopards (Panthera pardus), and brown hyaenas (Parahyaena brunnea) were considered the most problematic carnivores, but sensitivity to land-use varied among these four species. Black- backed jackals had the highest occupancy rates of all four predators and were 3.8 times more likely to occupy sites on game farms compared to livestock farms. By contrast, leopards and brown hyaenas were only detected on game farms, and caracals did not appear to be sensitive to the effects of land-use. In general, the interactions among carnivores were weak and were likely driven by carnivore diversity, resource partitioning, and anthropogenic pressures. While there were many subtle differences in the distribution of mammal species and human attitudes towards wildlife on livestock and game farms in the FKC, there were also many similarities. My study has produced results that can be used by the FKC community to better understand how mammals and humans interact across the landscape, information that will ultimately contribute to future conservation planning in the area.
- Full Text:
- Date Issued: 2016
- Authors: Kok, Armand du Preez
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/561 , vital:19970
- Description: Human population growth is causing an increase in habitat transformation on a global scale, and this transformation is driven by changes in land-use practices. One consequence of habitat transformation is the negative effect it can have on mammal communities, especially carnivores. Carnivores are important components of ecosystems as they play an essential structuring role, but also often come into conflict with people. I studied the impact of land-use on mammalian diversity, the attitudes of landowners/managers towards carnivores, the distribution of carnivores, and the interactions among carnivore species in the Fish-Kowie corridor (FKC), an area of conservation concern, in the Eastern Cape, South Africa. Livestock and game farming are the two dominant land-use types in the FKC. Carnivore distribution data were collected between 2012 and 2014 using a robust camera trap survey that consisted of 432 camera stations (216 on livestock and 216 on game farms). In addition, the attitudes of 55 landowners/managers were assessed using semi- structured questionnaire interviews that were conducted in person. My results revealed that mammal diversity was similar on the two land-use types. However, individual species differed in their distribution on the two land-use types. In general, both livestock and game farmers had negative attitudes towards carnivores in the FKC, due to their depredation of valuable livestock and game species. Black-backed jackals (Canis mesomelas), caracals (Caracal caracal), leopards (Panthera pardus), and brown hyaenas (Parahyaena brunnea) were considered the most problematic carnivores, but sensitivity to land-use varied among these four species. Black- backed jackals had the highest occupancy rates of all four predators and were 3.8 times more likely to occupy sites on game farms compared to livestock farms. By contrast, leopards and brown hyaenas were only detected on game farms, and caracals did not appear to be sensitive to the effects of land-use. In general, the interactions among carnivores were weak and were likely driven by carnivore diversity, resource partitioning, and anthropogenic pressures. While there were many subtle differences in the distribution of mammal species and human attitudes towards wildlife on livestock and game farms in the FKC, there were also many similarities. My study has produced results that can be used by the FKC community to better understand how mammals and humans interact across the landscape, information that will ultimately contribute to future conservation planning in the area.
- Full Text:
- Date Issued: 2016
Leopard population density and community attitudes towards leopards in and around Debshan Ranch, Shangani, Zimbabwe
- Authors: Nyoni, Phumuzile
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5946 , http://hdl.handle.net/10962/d1020838
- Description: Leopards (Panthera pardus) are regarded as one of the most resilient large carnivore species in the world and can persist in human dominated landscapes, areas with low prey availability nd highly fragmented habitats. However, recent evidence across much of their range reveals declining populations. In Zimbabwe, 500 Convention for the International Trade in Endangered Species (CITES) export tags are available annually for leopards as hunting trophies, despite limited accurate data on the leopard populations of the country. Moreover, when coupled with the massive land conversions under the controversial National Land Reform Programme (NLRP), leopard populations in Zimbabwe are in dire need of assessment. My study was conducted on Debshan ranch, Shangani, Zimbabwe, which is a commercial cattle (Bos indicus) ranch but also supports a high diversity of indigenous wildlife including an apparently healthy leopard population. However, the NLRP has resulted in an increase in small-holder subsistence farming communities around the ranch (the land was previously privately owned and divided into larger sub-units). This change in land-use means that both human and livestock densities have increased and the potential for human leopard conflict has increased. I estimated the leopard population density of the ranch and assessed community attitudes towards leopards in the communities surrounding the ranch. To estimate population densities, I performed spoor counts and conducted a camera trapping survey. Questionnaire interviews were used to assess community attitudes. My spoor counts provided a leopard density estimate of 13.57 leopards/100km2 compared to the camera trapping estimate of between 2.0 and 6.9 leopards/100km2. Although the high density estimate derived from the spoor counts is possible for Debshan because leopards are the apex predators and are adequately protected, potential edge effects are not yet fully understood. Thus, the more conservative estimate of 2.0 leopards/100km2, derived from the camera trapping survey, is probably more appropriate. Attitudes towards predators amongst respondents surrounding Debshan (n = 140) were neither too negative nor positive, attitude index had a mean score of 1.7 ± 3.8 (range: -7 – 10). No single predictor variable used in my analysis was able to adequately explain why the communities held these negative views. However, livestock losses were repeatedly listed by respondents as being one of the main reasons for their lack of tolerance towards predators. The density estimate of 2.0 leopards/100km2 translates to a population of 9 – 26 leopards within Debshan ranch. This density estimate is too low considering the habitat type at Debshan ranch but should be interpreted with caution as it lacks fundamental elements like age and sex ratio. Moreover, the interaction of the leopard population with the surrounding communities is currently unclear. As a precautionary measure, I recommended reducing the annual hunting quota for Debshan from five to one leopard. Future work should aim to improve the attitudes of the surrounding communities to secure broader landscapes for leopard conservation while also reconciling density estimates to fully understand the leopard population of the region.
- Full Text:
- Date Issued: 2016
- Authors: Nyoni, Phumuzile
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5946 , http://hdl.handle.net/10962/d1020838
- Description: Leopards (Panthera pardus) are regarded as one of the most resilient large carnivore species in the world and can persist in human dominated landscapes, areas with low prey availability nd highly fragmented habitats. However, recent evidence across much of their range reveals declining populations. In Zimbabwe, 500 Convention for the International Trade in Endangered Species (CITES) export tags are available annually for leopards as hunting trophies, despite limited accurate data on the leopard populations of the country. Moreover, when coupled with the massive land conversions under the controversial National Land Reform Programme (NLRP), leopard populations in Zimbabwe are in dire need of assessment. My study was conducted on Debshan ranch, Shangani, Zimbabwe, which is a commercial cattle (Bos indicus) ranch but also supports a high diversity of indigenous wildlife including an apparently healthy leopard population. However, the NLRP has resulted in an increase in small-holder subsistence farming communities around the ranch (the land was previously privately owned and divided into larger sub-units). This change in land-use means that both human and livestock densities have increased and the potential for human leopard conflict has increased. I estimated the leopard population density of the ranch and assessed community attitudes towards leopards in the communities surrounding the ranch. To estimate population densities, I performed spoor counts and conducted a camera trapping survey. Questionnaire interviews were used to assess community attitudes. My spoor counts provided a leopard density estimate of 13.57 leopards/100km2 compared to the camera trapping estimate of between 2.0 and 6.9 leopards/100km2. Although the high density estimate derived from the spoor counts is possible for Debshan because leopards are the apex predators and are adequately protected, potential edge effects are not yet fully understood. Thus, the more conservative estimate of 2.0 leopards/100km2, derived from the camera trapping survey, is probably more appropriate. Attitudes towards predators amongst respondents surrounding Debshan (n = 140) were neither too negative nor positive, attitude index had a mean score of 1.7 ± 3.8 (range: -7 – 10). No single predictor variable used in my analysis was able to adequately explain why the communities held these negative views. However, livestock losses were repeatedly listed by respondents as being one of the main reasons for their lack of tolerance towards predators. The density estimate of 2.0 leopards/100km2 translates to a population of 9 – 26 leopards within Debshan ranch. This density estimate is too low considering the habitat type at Debshan ranch but should be interpreted with caution as it lacks fundamental elements like age and sex ratio. Moreover, the interaction of the leopard population with the surrounding communities is currently unclear. As a precautionary measure, I recommended reducing the annual hunting quota for Debshan from five to one leopard. Future work should aim to improve the attitudes of the surrounding communities to secure broader landscapes for leopard conservation while also reconciling density estimates to fully understand the leopard population of the region.
- Full Text:
- Date Issued: 2016
Life history of the maritime platygastrid Echthrodesis lamorali Masner 1968 (Hymenoptera: Platygastridae: Scelioninae)
- Authors: Owen, Candice Ann
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/837 , vital:19995 , 10.21504/10962/837
- Description: Echthrodesis lamorali Masner 1968 (Hymenoptera: Platygastridae, Scelioninae) is an intertidal parasitoid wasp that uses the eggs of the maritime spider, Desis formidabilis O.P. Cambridge 1890 (Araneae: Desidae), as a host. This species is one of only three known maritime parasitoids globally, and is the only known spider egg parasitoid that attacks its host within the intertidal region in southern Africa. Originally described from ‘The Island’, Kommetjie (Western Cape, South Africa), this shore was the only known locality of the species at the commencement of this thesis. Furthermore, the extent of the parasitism pressure the wasp exerts on D. formidabilis was largely unknown, along with its basic biology (drivers of its broad-scale and fine-scale distribution patterns; parasitism incidence; and sex ratios) and morphological and physiological adaptations for living within the frequently saltwater-inundated environment. This thesis unravelled these aspects, as well as experimentally provided data for many components of the life history of E. lamorali that had only been hypothesized by other authors, at a variety of scales, from the country-wide ecosystem, to single shores, and finally to the scale of the individual. While the distribution of E. lamorali was found to be much wider than previously thought, it remained restricted to the shores of the Cape Peninsula (Western Cape, South Africa). The host spiders were located throughout a much wider distributional range than the wasp, from East London in the east to the Peninsula, but some behavioural and morphological differences were found between those within and outside of the range of the parasitoid, suggesting range-limitation imposed by the host on E. lamorali. This limitation may be strengthened by the general lack of suitable shore types within the close vicinity of the Peninsula. Modelling using macro-climatic conditions suggested that maximum temperatures and humidities were also largely limiting to E. lamorali, although these patterns were not observable in the micro-climates in which the species survives. The wasp populations and spiders within the range of E. lamorali as identified in Chapter 2 were assessed to determine any preferences for local conditions, including location along the Peninsula, nesting sites and intertidal zones within single shores, using AICc modelling, which detected parasitism patterns in D. formidabilis and E. lamorali populations, as well as the sex ratios in the latter species. The models showed that the spider population size and distribution was more influenced by bottom-up factors such as abiotic components of the shore than by parasitism, which only showed density dependence with the host at certain scales. Both host and parasitoid populations illustrated a preference for the middle zone on single shores. Observed spider nest characteristics suggested opportunistic nesting behaviour in the species, although preference was shown for construction along an east-west orientation and in locations with low sun exposure. Along with larger population sizes on the west coast over the east coast (not reflected by E. lamorali), these observations suggest that D. formidabilis prefers cooler environments. Spider brood success was 50% in unparasitized egg-sacs, but this figure halved when E. lamorali gained access to the eggs (of which 100% within a single compartment were parasitized each time). Encapsulation of the embryo was found to be positively correlated with parasitism, indicating some form of host resistance. Resultant parasitoid broods illustrated a strong female bias in the species, as is common for this group of insects. The life history of E. lamorali was then assessed at a smaller scale, that of the individual. Scanning electron microscopy of whole E. lamorali specimens and light microscopy of sectioned specimens demonstrated no morphological adaptations in the trachea and spiracles to cope with saltwater inundation. On the other hand, respirometry experiments categorically demonstrated that the species copes with inundation through the formation of a physical gill over the full habitus, and the induction of a state of torpor to reduce metabolic needs, when submerged. This precludes the need for any further morphological adaptations. Determination of the wasp’s critical thermal tolerance illustrated a wide temperature range with a particularly cold lower limit of -1.1ºC ± 0.16, suggesting the presence of related genera or ancestors in much colder environments. With a much broader distribution than previously thought, and the inclusion of the distributional range of E. lamorali within the Table Mountain National Park, this species is being effectively conserved and managed through the umbrella-conservation of the park. Links to the host proved to vary at differing scales, proving the need for scale considerations to be included in other similar biological and ecological studies. Finally, the species showed physiological adaptation to its intertidal existence. Echthrodesis lamorali, the only discovered maritime spider egg parasitoid in Southern Africa, displayed unusual characteristics at every scale of its life history and as such, warrants further investigation.
- Full Text:
- Date Issued: 2016
- Authors: Owen, Candice Ann
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/837 , vital:19995 , 10.21504/10962/837
- Description: Echthrodesis lamorali Masner 1968 (Hymenoptera: Platygastridae, Scelioninae) is an intertidal parasitoid wasp that uses the eggs of the maritime spider, Desis formidabilis O.P. Cambridge 1890 (Araneae: Desidae), as a host. This species is one of only three known maritime parasitoids globally, and is the only known spider egg parasitoid that attacks its host within the intertidal region in southern Africa. Originally described from ‘The Island’, Kommetjie (Western Cape, South Africa), this shore was the only known locality of the species at the commencement of this thesis. Furthermore, the extent of the parasitism pressure the wasp exerts on D. formidabilis was largely unknown, along with its basic biology (drivers of its broad-scale and fine-scale distribution patterns; parasitism incidence; and sex ratios) and morphological and physiological adaptations for living within the frequently saltwater-inundated environment. This thesis unravelled these aspects, as well as experimentally provided data for many components of the life history of E. lamorali that had only been hypothesized by other authors, at a variety of scales, from the country-wide ecosystem, to single shores, and finally to the scale of the individual. While the distribution of E. lamorali was found to be much wider than previously thought, it remained restricted to the shores of the Cape Peninsula (Western Cape, South Africa). The host spiders were located throughout a much wider distributional range than the wasp, from East London in the east to the Peninsula, but some behavioural and morphological differences were found between those within and outside of the range of the parasitoid, suggesting range-limitation imposed by the host on E. lamorali. This limitation may be strengthened by the general lack of suitable shore types within the close vicinity of the Peninsula. Modelling using macro-climatic conditions suggested that maximum temperatures and humidities were also largely limiting to E. lamorali, although these patterns were not observable in the micro-climates in which the species survives. The wasp populations and spiders within the range of E. lamorali as identified in Chapter 2 were assessed to determine any preferences for local conditions, including location along the Peninsula, nesting sites and intertidal zones within single shores, using AICc modelling, which detected parasitism patterns in D. formidabilis and E. lamorali populations, as well as the sex ratios in the latter species. The models showed that the spider population size and distribution was more influenced by bottom-up factors such as abiotic components of the shore than by parasitism, which only showed density dependence with the host at certain scales. Both host and parasitoid populations illustrated a preference for the middle zone on single shores. Observed spider nest characteristics suggested opportunistic nesting behaviour in the species, although preference was shown for construction along an east-west orientation and in locations with low sun exposure. Along with larger population sizes on the west coast over the east coast (not reflected by E. lamorali), these observations suggest that D. formidabilis prefers cooler environments. Spider brood success was 50% in unparasitized egg-sacs, but this figure halved when E. lamorali gained access to the eggs (of which 100% within a single compartment were parasitized each time). Encapsulation of the embryo was found to be positively correlated with parasitism, indicating some form of host resistance. Resultant parasitoid broods illustrated a strong female bias in the species, as is common for this group of insects. The life history of E. lamorali was then assessed at a smaller scale, that of the individual. Scanning electron microscopy of whole E. lamorali specimens and light microscopy of sectioned specimens demonstrated no morphological adaptations in the trachea and spiracles to cope with saltwater inundation. On the other hand, respirometry experiments categorically demonstrated that the species copes with inundation through the formation of a physical gill over the full habitus, and the induction of a state of torpor to reduce metabolic needs, when submerged. This precludes the need for any further morphological adaptations. Determination of the wasp’s critical thermal tolerance illustrated a wide temperature range with a particularly cold lower limit of -1.1ºC ± 0.16, suggesting the presence of related genera or ancestors in much colder environments. With a much broader distribution than previously thought, and the inclusion of the distributional range of E. lamorali within the Table Mountain National Park, this species is being effectively conserved and managed through the umbrella-conservation of the park. Links to the host proved to vary at differing scales, proving the need for scale considerations to be included in other similar biological and ecological studies. Finally, the species showed physiological adaptation to its intertidal existence. Echthrodesis lamorali, the only discovered maritime spider egg parasitoid in Southern Africa, displayed unusual characteristics at every scale of its life history and as such, warrants further investigation.
- Full Text:
- Date Issued: 2016
Mapping Nitrogen Loading in Freshwater Systems: Using Aquatic Biota to Trace Nutrients
- Authors: Motitsoe, Samuel Nkopane
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5945 , http://hdl.handle.net/10962/d1020819
- Description: The majority of river systems in developing countries like South Africa, are found in catchments areas that are densely human populated, therefore are subjected to intense land-use and developmental pressures. Anthropogenic nutrient pollution or the excessive addition of nutrients is one important type of stressors that river systems often experience through intense land-use, which includes poor waste management and agricultural practices. Such events are referred to as the “urban syndrome”, were human populations and developmental demands outpace ecosystem services. Traditional measurements of water quality (e.g. physicochemical and micro-nutrient assessments) and biological monitoring (e.g. South African Scoring System 5, SASS5) techniques for assessing ecosystem health have being widely used to reflect the ecological health and status of river systems. However these techniques have a number of challenges associated with their application. SASS5 which is used most prevalently in southern Africa for example, can only be applied in lotic systems, it is habitat dependent and finally (but arguably most importantly) it cannot identify the source of pollution inputs. Recent laboratory studies using stable isotopic ratios (δ15N and δ13C) of aquatic macrophytes (duckweed: Spirodela sp.) have shown successful differentiation between different N-sources and the mapping of temporal and spatial nitrogen dynamics in freshwater systems. Furthermore δ15N isotopic values of Spirodela sp. showed the capability to act as an early warning indicator of eutrophication, before the onset of aquatic ecosystem degradation. Therefore, this study aimed to field test the potential of sewage plume mapping using the stable isotopic values of Spirodela sp. and aquatic macroinvertebrates at nine study sites on the Bloukrans-Kowie River and ten study sites on the Bushman-New Year’s River systems in the Eastern Cape, South Africa. And more...
- Full Text:
- Date Issued: 2016
- Authors: Motitsoe, Samuel Nkopane
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5945 , http://hdl.handle.net/10962/d1020819
- Description: The majority of river systems in developing countries like South Africa, are found in catchments areas that are densely human populated, therefore are subjected to intense land-use and developmental pressures. Anthropogenic nutrient pollution or the excessive addition of nutrients is one important type of stressors that river systems often experience through intense land-use, which includes poor waste management and agricultural practices. Such events are referred to as the “urban syndrome”, were human populations and developmental demands outpace ecosystem services. Traditional measurements of water quality (e.g. physicochemical and micro-nutrient assessments) and biological monitoring (e.g. South African Scoring System 5, SASS5) techniques for assessing ecosystem health have being widely used to reflect the ecological health and status of river systems. However these techniques have a number of challenges associated with their application. SASS5 which is used most prevalently in southern Africa for example, can only be applied in lotic systems, it is habitat dependent and finally (but arguably most importantly) it cannot identify the source of pollution inputs. Recent laboratory studies using stable isotopic ratios (δ15N and δ13C) of aquatic macrophytes (duckweed: Spirodela sp.) have shown successful differentiation between different N-sources and the mapping of temporal and spatial nitrogen dynamics in freshwater systems. Furthermore δ15N isotopic values of Spirodela sp. showed the capability to act as an early warning indicator of eutrophication, before the onset of aquatic ecosystem degradation. Therefore, this study aimed to field test the potential of sewage plume mapping using the stable isotopic values of Spirodela sp. and aquatic macroinvertebrates at nine study sites on the Bloukrans-Kowie River and ten study sites on the Bushman-New Year’s River systems in the Eastern Cape, South Africa. And more...
- Full Text:
- Date Issued: 2016
Mesoscale mechanisms of larval transport and settlement in relation to physical factors off the south coast of South Africa: a topographic approach
- Authors: Mian, Shana Iva
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5947 , http://hdl.handle.net/10962/d1020844
- Description: The majority of benthic marine invertebrate life cycles include a meroplanktonic phase. Most marine biologists recognise that this stage could play an important role in dispersal, especially for sedentary or sessile organisms. Recent studies on larval dispersal have found that dispersal does not occur to the extent that was previously believed. Some larvae instead remain close to their natal populations through larval nearshore retention mechanisms, both active and passive. This study attempted to a) describe nearshore distribution patterns of several intertidal larvae in relation to nearshore hydrodynamics, b) infer whether larvae are active or passive in the water column and whether this differs among taxa and c) compare pelagic mussel larval abundance with settlement rates, at 2 bay and 2 open coast sites on the south coast of South Africa to note any topographical effects. At each of the four sites, pelagic samples were collected along 2 transects. Larvae and current speed data were collected at various depths (surface, mid-depth and bottom) at distances of 200, 400, 900 and 2400m offshore of the coast. Settlement samples were collected at sites that were onshore of the pelagic transects using plastic souring pads following previous studies. Pelagic larval distribution showed no effect of topography. Instead larval abundance was highly variable among sample periods and among different taxa. Slow swimming D-stage mussel larvae were found to be positively correlated with both upwelling and turbulence indices suggesting that they behave as passive particles in the water column. The abundances of larval taxa with faster swimming speeds than the D-larvae were negatively correlated with upwelling and did not correlate with turbulence. This suggests that these larvae are more active within the water column than the D-larvae which would theoretically allow them to maintain their position in the water column. Further analysis revealed that mean larval depth correlated with mean depth of shoreward moving water masses regardless of the state of upwelling. These results suggest that larvae were actively selecting the depth at which they were found presumably in order to associate themselves with shoreward moving currents. This interpretation was supported by ontogenetic patterns in the behaviour of barnacle larvae, the nauplii of which were found further offshore as they aged, and closer onshore again once they reach the faster swimming cyprid stage. Although there was no detectable effect of topography on the abundances of planktonic larvae, the settlement section of this study revealed an effect of topography, with higher settlement and recruitment rates at bay sites than at the open coast sites. Settlement rates were seen to be negatively correlated with turbulence at bay sites but not open coast sites. Recruitment rates for each sample event were positively correlated with upwelling at each site. This study found pelagic larvae to be generally active within the water column which allowed them to remain close to the shore regardless of topography and upwelling/turbulence regimes. Although meaningful correlation analyses between pelagic larval supply and settlement rates could not be conducted due to loss of settlement collectors, settlement rates were affected by local topography with higher settlement and recruitment in bay sites.
- Full Text:
- Date Issued: 2016
- Authors: Mian, Shana Iva
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5947 , http://hdl.handle.net/10962/d1020844
- Description: The majority of benthic marine invertebrate life cycles include a meroplanktonic phase. Most marine biologists recognise that this stage could play an important role in dispersal, especially for sedentary or sessile organisms. Recent studies on larval dispersal have found that dispersal does not occur to the extent that was previously believed. Some larvae instead remain close to their natal populations through larval nearshore retention mechanisms, both active and passive. This study attempted to a) describe nearshore distribution patterns of several intertidal larvae in relation to nearshore hydrodynamics, b) infer whether larvae are active or passive in the water column and whether this differs among taxa and c) compare pelagic mussel larval abundance with settlement rates, at 2 bay and 2 open coast sites on the south coast of South Africa to note any topographical effects. At each of the four sites, pelagic samples were collected along 2 transects. Larvae and current speed data were collected at various depths (surface, mid-depth and bottom) at distances of 200, 400, 900 and 2400m offshore of the coast. Settlement samples were collected at sites that were onshore of the pelagic transects using plastic souring pads following previous studies. Pelagic larval distribution showed no effect of topography. Instead larval abundance was highly variable among sample periods and among different taxa. Slow swimming D-stage mussel larvae were found to be positively correlated with both upwelling and turbulence indices suggesting that they behave as passive particles in the water column. The abundances of larval taxa with faster swimming speeds than the D-larvae were negatively correlated with upwelling and did not correlate with turbulence. This suggests that these larvae are more active within the water column than the D-larvae which would theoretically allow them to maintain their position in the water column. Further analysis revealed that mean larval depth correlated with mean depth of shoreward moving water masses regardless of the state of upwelling. These results suggest that larvae were actively selecting the depth at which they were found presumably in order to associate themselves with shoreward moving currents. This interpretation was supported by ontogenetic patterns in the behaviour of barnacle larvae, the nauplii of which were found further offshore as they aged, and closer onshore again once they reach the faster swimming cyprid stage. Although there was no detectable effect of topography on the abundances of planktonic larvae, the settlement section of this study revealed an effect of topography, with higher settlement and recruitment rates at bay sites than at the open coast sites. Settlement rates were seen to be negatively correlated with turbulence at bay sites but not open coast sites. Recruitment rates for each sample event were positively correlated with upwelling at each site. This study found pelagic larvae to be generally active within the water column which allowed them to remain close to the shore regardless of topography and upwelling/turbulence regimes. Although meaningful correlation analyses between pelagic larval supply and settlement rates could not be conducted due to loss of settlement collectors, settlement rates were affected by local topography with higher settlement and recruitment in bay sites.
- Full Text:
- Date Issued: 2016
Penguin parenting : assortative mating, nest attendance and sex-specific chick provisioning in the African Penguin (Spheniscus demersus)
- Authors: Smith, Diane Lauren
- Date: 2016
- Subjects: African penguin , Penguins -- South Africa , Penguins -- Sexual behavior , Parental behavior in animals
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5943 , http://hdl.handle.net/10962/d1019993
- Description: Animal behaviour is especially sensitive to environmental variability and prey availability during the breeding season, and this is particularly true for non-volant, central place foragers such as the endangered African Penguin (Spheniscus demersus). Individual sex and morphology, as well as the level of assortment within mated pairs can influence both the behaviour and the reproductive success of species exhibiting biparental care. This study made use of a large biometric database and nest attendance video footage to determine the influence of intrinsic (assortative mating, brood size and chick age) and extrinsic (environmental conditions, anthropic disturbance) factors on breeding behaviour and performance of African Penguins on Bird Island, Algoa Bay, during peak breeding (March - July) in 2013. While sexual dimorphism in African Penguins is subtle, the colony-specific discriminant functions presented here provide an accurate sexing tool when only bill and flipper length are available. Despite the premise that selection of a large, high-quality mate in this longlived, monogamous seabird governs lifetime fitness, only low levels of assortative mating were found, and this only for earlier breeders, when larger females (but not males) bred. The 2013 season was a particularly successful one, coinciding with above-average sardine and anchovy abundance, and almost 80 percent of monitored nests were double-brooded, with very low levels of mortality. A- and B-chicks of double broods and singleton chicks grew at similar rates and exhibited similar body condition indices. In these conditions, chick developmental rates were independent of parental size, assortment or provisioning behaviour. Females raising a double brood were significantly lighter and in poorer body condition than those raising a single chick, although the same trend was not evident in males. Offspring sex ratio in 2013 (2.27:1) favoured male chicks, suggesting that there is potential to over-produce the larger sex when resources are plentiful. Peak nest arrival and departure times of parents did not change over the course of monitored breeding attempts (March-June), nor were they different for disturbed and undisturbed nests or for a single or double brood. The increase in CCTV-observed provisioning rate as chicks grew larger was best explained by brood size, at-sea chlorophyll a concentration, and maximum air temperature, but was unrelated to parental morphology or assortative index. Importantly, parental absenteeism commenced earlier and was markedly greater in nests frequently handled by researchers than in undisturbed nests. Both the time spent together by parents, and absenteeism were measurably affected by maximum afternoon air temperatures, the effects of which are expected to be exacerbated by poorer foraging conditions and climate change. A third of manually-monitored nests shared chick-guarding duties unequally, although this phenomenon was independent of parental sex or morphology. The adaptive benefits of mating patterns and division of labour during chick-rearing may only become apparent in a year of below-average food availability and it is highly recommended that this study be repeated in a year of scarce food resources. These findings augment past foraging ecology studies and demonstrate that investigator disturbance and environmental conditions can affect the nesting behaviour of this highly threatened seabird.
- Full Text:
- Date Issued: 2016
- Authors: Smith, Diane Lauren
- Date: 2016
- Subjects: African penguin , Penguins -- South Africa , Penguins -- Sexual behavior , Parental behavior in animals
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5943 , http://hdl.handle.net/10962/d1019993
- Description: Animal behaviour is especially sensitive to environmental variability and prey availability during the breeding season, and this is particularly true for non-volant, central place foragers such as the endangered African Penguin (Spheniscus demersus). Individual sex and morphology, as well as the level of assortment within mated pairs can influence both the behaviour and the reproductive success of species exhibiting biparental care. This study made use of a large biometric database and nest attendance video footage to determine the influence of intrinsic (assortative mating, brood size and chick age) and extrinsic (environmental conditions, anthropic disturbance) factors on breeding behaviour and performance of African Penguins on Bird Island, Algoa Bay, during peak breeding (March - July) in 2013. While sexual dimorphism in African Penguins is subtle, the colony-specific discriminant functions presented here provide an accurate sexing tool when only bill and flipper length are available. Despite the premise that selection of a large, high-quality mate in this longlived, monogamous seabird governs lifetime fitness, only low levels of assortative mating were found, and this only for earlier breeders, when larger females (but not males) bred. The 2013 season was a particularly successful one, coinciding with above-average sardine and anchovy abundance, and almost 80 percent of monitored nests were double-brooded, with very low levels of mortality. A- and B-chicks of double broods and singleton chicks grew at similar rates and exhibited similar body condition indices. In these conditions, chick developmental rates were independent of parental size, assortment or provisioning behaviour. Females raising a double brood were significantly lighter and in poorer body condition than those raising a single chick, although the same trend was not evident in males. Offspring sex ratio in 2013 (2.27:1) favoured male chicks, suggesting that there is potential to over-produce the larger sex when resources are plentiful. Peak nest arrival and departure times of parents did not change over the course of monitored breeding attempts (March-June), nor were they different for disturbed and undisturbed nests or for a single or double brood. The increase in CCTV-observed provisioning rate as chicks grew larger was best explained by brood size, at-sea chlorophyll a concentration, and maximum air temperature, but was unrelated to parental morphology or assortative index. Importantly, parental absenteeism commenced earlier and was markedly greater in nests frequently handled by researchers than in undisturbed nests. Both the time spent together by parents, and absenteeism were measurably affected by maximum afternoon air temperatures, the effects of which are expected to be exacerbated by poorer foraging conditions and climate change. A third of manually-monitored nests shared chick-guarding duties unequally, although this phenomenon was independent of parental sex or morphology. The adaptive benefits of mating patterns and division of labour during chick-rearing may only become apparent in a year of below-average food availability and it is highly recommended that this study be repeated in a year of scarce food resources. These findings augment past foraging ecology studies and demonstrate that investigator disturbance and environmental conditions can affect the nesting behaviour of this highly threatened seabird.
- Full Text:
- Date Issued: 2016
Phylogenetics and historical biogeography of the Teloganodidae (Ephemeroptera)
- Pereira da Conceicoa, Lyndall Louise
- Authors: Pereira da Conceicoa, Lyndall Louise
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/64900 , vital:28629
- Description: The Teloganodidae are a mayfly family endemic to the southwestern Cape (South Africa), with relatives in Madagascar and Asia. Like many other aquatic invertebrates in Africa, they have been considerably understudied. Research into biodiversity and biogeography allows an understanding of the earth’s biota, producing knowledge which can be used to develop strategies to preserve and monitor this biota. Mismanagement of water systems places biodiversity of river fauna under an ever-increasing extinction threat. This investigation explores rivers in under-collected areas to determine how well teloganodids have been represented in the literature, with four genera and five species described at the onset of this study. A lectotype for Lestagella penicillata Barnard (1940) has been elected and described in detail, setting “benchmark” characters for future descriptions. Standard DNA sequencing methods provide portions of three mitochondrial genes; cytochrome oxidase subunit I (COI), small subunit ribosomal 16S RNA (16S), 12S ribosomal DNA (12S) and two nuclear genes, Histone 3 (H3) and 28S ribosomal DNA (28S) for up to 255 specimens. Fore and hind wings of 79 teloganodid adults were used to examine phylogenetic signal and evolutionary divergence using geometric morphometrics. A multi-faceted approach is used to investigate relationships between clades and the effects of deep-time climatic and landform changes which have influenced the diversity and distribution seen today. Tree (Bayesian Inference and Maximum Likelihood) and network (parsimony) phylogenies, ancestral reconstruction, historical biogeography and wingevolution of the Teloganodidae are investigated. Species tree analyses discovered 27 species and six genera. Distinct lineages are restricted to catchments, and strong phylogeographic structure was found within most genera. Southern African Teloganodidae are shown to have originated in the Cretaceous, with divergence and dispersal of lineages depended on their established locality at the time of tectonic events (uplift) and climatic changes (sea level regressions and transgressions). Geographic clines in wing-shape of Lestagella across its range imply evolutionary adaptations to specific catchment landscape and environment. A detailed analysis of biodiversity has many valuable contributions, from directing future research, understanding adaptive processes, fine-tuning phylogeographical and evolutionary hypotheses, to improving management and conservation decisions in order to preserve endemic biodiversity hotspots.
- Full Text:
- Date Issued: 2016
- Authors: Pereira da Conceicoa, Lyndall Louise
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/64900 , vital:28629
- Description: The Teloganodidae are a mayfly family endemic to the southwestern Cape (South Africa), with relatives in Madagascar and Asia. Like many other aquatic invertebrates in Africa, they have been considerably understudied. Research into biodiversity and biogeography allows an understanding of the earth’s biota, producing knowledge which can be used to develop strategies to preserve and monitor this biota. Mismanagement of water systems places biodiversity of river fauna under an ever-increasing extinction threat. This investigation explores rivers in under-collected areas to determine how well teloganodids have been represented in the literature, with four genera and five species described at the onset of this study. A lectotype for Lestagella penicillata Barnard (1940) has been elected and described in detail, setting “benchmark” characters for future descriptions. Standard DNA sequencing methods provide portions of three mitochondrial genes; cytochrome oxidase subunit I (COI), small subunit ribosomal 16S RNA (16S), 12S ribosomal DNA (12S) and two nuclear genes, Histone 3 (H3) and 28S ribosomal DNA (28S) for up to 255 specimens. Fore and hind wings of 79 teloganodid adults were used to examine phylogenetic signal and evolutionary divergence using geometric morphometrics. A multi-faceted approach is used to investigate relationships between clades and the effects of deep-time climatic and landform changes which have influenced the diversity and distribution seen today. Tree (Bayesian Inference and Maximum Likelihood) and network (parsimony) phylogenies, ancestral reconstruction, historical biogeography and wingevolution of the Teloganodidae are investigated. Species tree analyses discovered 27 species and six genera. Distinct lineages are restricted to catchments, and strong phylogeographic structure was found within most genera. Southern African Teloganodidae are shown to have originated in the Cretaceous, with divergence and dispersal of lineages depended on their established locality at the time of tectonic events (uplift) and climatic changes (sea level regressions and transgressions). Geographic clines in wing-shape of Lestagella across its range imply evolutionary adaptations to specific catchment landscape and environment. A detailed analysis of biodiversity has many valuable contributions, from directing future research, understanding adaptive processes, fine-tuning phylogeographical and evolutionary hypotheses, to improving management and conservation decisions in order to preserve endemic biodiversity hotspots.
- Full Text:
- Date Issued: 2016
Phylogenetics of the keratin-feeding beetle family Trogidae (Coleoptera: Scarabaeoidea)
- Authors: Strümpher, Werner Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/1232 , vital:20037
- Description: Trogidae constitute a monophyletic and biologically unique family within the Scarabaeoidea, being the only keratinophagous group in its superfamily. Traditionally, the family has been divided into three distinctive genera, Omorgus Erichson, Polynoncus Burmeister, and Trox Fabricius. Although the taxonomy of the group is relatively well studied, recently changes to the existing classification have been proposed without the family as currently constituted being subjected to phylogenetic analyses. In this study I present the first molecular phylogeny for this cosmopolitan family, based on three partially sequenced gene regions: 16SrRNA, 18S rRNA and 28S rRNA domain 2. Analyses resolved relationships between and within genera and subgenera that are largely congruent with existing taxonomic hypotheses based on morphology. I recovered four well-supported radiations: Polynoncus, Omorgus, Holarctic Trox and Afrotropical Phoberus. One of the more surprising results was the monophyly of Phoberus. Based on the evidence, I propose reinstating the genus Phoberus to accommodate all Afrotropical (including Madagascan endemic) species. The results re-emphasise the validity of Scholtz’s (1986a) classification system for the genus Omorgusand its subgeneraand provide evidence of an African origin for Madagascan trogids. Divergence analysis was able to date the major events for the origin of extant lineages of Trogidae. The subsequent diversification of the major lineages is largely attributed to Pangaean and Gondwanan vicariance events in the Mid-Jurassic and early Late Cretaceous, respectively. The separation of the landmasses resulted in the evolution of four distinct groups: Omorgus, Polynoncus, Trox and Phoberus. The monophyletic subgenus Phoberus MacLeay is of particular interest; about one-third (14 of 40) of the species in the Afrotropical region have lost the ability to fly. To gain insights into the evolution of flightlessness in this clade, phylogenetic relationships among species were inferred using molecular sequence data. Four partial sequences of four genes (COI, 16S, 18S and 28S domain 2) were obtained for 27 species, covering all of the recognised species-groups. Estimated times of divergence were based on published mutation rates for COI. The results recovered eight monophyletic lineages, supporting the morphology-based subdivisions of the genus. Flightlessness evolved at least five times within the subgenus. There is no strong support for the re-acquisition of functional wings once they are lost. Diversification, and the present relictual distributions, in African Phoberus can be linked to climatic and geological events associated with the Miocene and Pliocene Climate Optimum in southern Africa. The evolution of flightlessness in Phoberus is consistent with the habitat stability hypothesis. All flightless species occupy refugial areas with relatively long-term environmental stability. Phoberus is a promising model group for studying evolutionary trends relating to flightlessness, speciation and biogeography. Flightlessness is a counterintuitive evolutionary development, given the many advantages of flight. To interpret the diversification in the flightless Phoberus capensis Scholtz, the phylogenetic relationships among several populations of P. capensis are investigated. Phylogenetic relationships among populations were inferred using molecular sequence data that suggested three distinct evolutionary lineages, which was also supported by morphological characters. Divergence time estimates suggest a Pliocene-Pleistocene diversification. Based on these results, it is suggested that P. capensis experienced climatically-driven allopatric speciation with sheltered Afrotemperate forests and high mountain peaks serving as important refugia in response to climatic exacerbations. The P. capensis complex thus represents a speciation process in which flight-restricted populations evolved in close allopatry, possibly as recently as the Pleistocene. Two of the three divergent and geographically distinct lineages are described as novel species. This study represents the most recent comprehensive work on the Trogidae. On the basis of this study, it is proposed that taxonomic changes to the generic classification of the family be made. Trogidae are formally divided into two subfamilies, Omorginae and Troginae. The subgenus Phoberus is restored to genus rank to include all the Afrotropical species, and Afromorgus is confirmed at subgeneric rank. The genus Madagatrox is synonymised with Phoberus.
- Full Text:
- Date Issued: 2016
- Authors: Strümpher, Werner Petrus
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/1232 , vital:20037
- Description: Trogidae constitute a monophyletic and biologically unique family within the Scarabaeoidea, being the only keratinophagous group in its superfamily. Traditionally, the family has been divided into three distinctive genera, Omorgus Erichson, Polynoncus Burmeister, and Trox Fabricius. Although the taxonomy of the group is relatively well studied, recently changes to the existing classification have been proposed without the family as currently constituted being subjected to phylogenetic analyses. In this study I present the first molecular phylogeny for this cosmopolitan family, based on three partially sequenced gene regions: 16SrRNA, 18S rRNA and 28S rRNA domain 2. Analyses resolved relationships between and within genera and subgenera that are largely congruent with existing taxonomic hypotheses based on morphology. I recovered four well-supported radiations: Polynoncus, Omorgus, Holarctic Trox and Afrotropical Phoberus. One of the more surprising results was the monophyly of Phoberus. Based on the evidence, I propose reinstating the genus Phoberus to accommodate all Afrotropical (including Madagascan endemic) species. The results re-emphasise the validity of Scholtz’s (1986a) classification system for the genus Omorgusand its subgeneraand provide evidence of an African origin for Madagascan trogids. Divergence analysis was able to date the major events for the origin of extant lineages of Trogidae. The subsequent diversification of the major lineages is largely attributed to Pangaean and Gondwanan vicariance events in the Mid-Jurassic and early Late Cretaceous, respectively. The separation of the landmasses resulted in the evolution of four distinct groups: Omorgus, Polynoncus, Trox and Phoberus. The monophyletic subgenus Phoberus MacLeay is of particular interest; about one-third (14 of 40) of the species in the Afrotropical region have lost the ability to fly. To gain insights into the evolution of flightlessness in this clade, phylogenetic relationships among species were inferred using molecular sequence data. Four partial sequences of four genes (COI, 16S, 18S and 28S domain 2) were obtained for 27 species, covering all of the recognised species-groups. Estimated times of divergence were based on published mutation rates for COI. The results recovered eight monophyletic lineages, supporting the morphology-based subdivisions of the genus. Flightlessness evolved at least five times within the subgenus. There is no strong support for the re-acquisition of functional wings once they are lost. Diversification, and the present relictual distributions, in African Phoberus can be linked to climatic and geological events associated with the Miocene and Pliocene Climate Optimum in southern Africa. The evolution of flightlessness in Phoberus is consistent with the habitat stability hypothesis. All flightless species occupy refugial areas with relatively long-term environmental stability. Phoberus is a promising model group for studying evolutionary trends relating to flightlessness, speciation and biogeography. Flightlessness is a counterintuitive evolutionary development, given the many advantages of flight. To interpret the diversification in the flightless Phoberus capensis Scholtz, the phylogenetic relationships among several populations of P. capensis are investigated. Phylogenetic relationships among populations were inferred using molecular sequence data that suggested three distinct evolutionary lineages, which was also supported by morphological characters. Divergence time estimates suggest a Pliocene-Pleistocene diversification. Based on these results, it is suggested that P. capensis experienced climatically-driven allopatric speciation with sheltered Afrotemperate forests and high mountain peaks serving as important refugia in response to climatic exacerbations. The P. capensis complex thus represents a speciation process in which flight-restricted populations evolved in close allopatry, possibly as recently as the Pleistocene. Two of the three divergent and geographically distinct lineages are described as novel species. This study represents the most recent comprehensive work on the Trogidae. On the basis of this study, it is proposed that taxonomic changes to the generic classification of the family be made. Trogidae are formally divided into two subfamilies, Omorginae and Troginae. The subgenus Phoberus is restored to genus rank to include all the Afrotropical species, and Afromorgus is confirmed at subgeneric rank. The genus Madagatrox is synonymised with Phoberus.
- Full Text:
- Date Issued: 2016
Population assessment and feeding ecology of brown hyenas (hyaena brunnea) in Mountain Zebra National Park, Eastern Cape, South Africa
- Authors: Comley, Jessica
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2862 , vital:20336
- Description: The development of many small (<400 km2), enclosed game reserves in the Eastern Cape Province of South Africa over the past 25 years has contributed greatly to the conservation of large carnivores. However, the brown hyena (Hyaena brunnea) is one of the least studied large carnivores in South Africa. Nevertheless, the reintroduction of this species (n=3 in 2008) into Mountain Zebra National Park (MZNP) provided the perfect opportunity to broaden our understanding of the role that this carnivore plays in an enclosed system. Camera trap data was collected for just over a year from April 2014 to April 2015 and brown hyena density estimates were calculated using spatially explicit capture-recapture analysis. Left-side images of brown hyenas were used in the analysis and 12 individuals were positively identified. The best model to estimate brown hyena density included a road covariate and estimated brown hyena density to be 6-10 individuals/100 km2 (an absolute abundance of between 12 and 21 individuals), which is higher than densities calculated for brown hyenas in other arid, open systems. In, addition, brown hyena scat samples were collected over a five year period from April 2011 to June 2015 and standard techniques for scat analysis were used to identify prey items. Cheetah (Acinonyx jubatus) and lion (Panthera leo) kill site data were used to investigate the impacts of these species on the diet of brown hyenas. Before the release of lions brown hyenas predominantly scavenged on medium-sized mammals, which was what the cheetahs mainly killed. However, after the release of the lions, brown hyenas predominantly scavenged on large mammals, which was what the lions primarily killed. The results from my study indicate that brown hyenas are most likely reaching high densities in enclosed systems, due to increased scavenging opportunities provided by other large predators. The rapid increase of brown hyena densities from small founder populations in enclosed reserves could result in inbreeding. Therefore, in order to successfully conserve brown hyenas and other large carnivores in South Africa, continual post-release monitoring and possible implementation of meta-population management schemes is required.
- Full Text:
- Date Issued: 2016
- Authors: Comley, Jessica
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10962/2862 , vital:20336
- Description: The development of many small (<400 km2), enclosed game reserves in the Eastern Cape Province of South Africa over the past 25 years has contributed greatly to the conservation of large carnivores. However, the brown hyena (Hyaena brunnea) is one of the least studied large carnivores in South Africa. Nevertheless, the reintroduction of this species (n=3 in 2008) into Mountain Zebra National Park (MZNP) provided the perfect opportunity to broaden our understanding of the role that this carnivore plays in an enclosed system. Camera trap data was collected for just over a year from April 2014 to April 2015 and brown hyena density estimates were calculated using spatially explicit capture-recapture analysis. Left-side images of brown hyenas were used in the analysis and 12 individuals were positively identified. The best model to estimate brown hyena density included a road covariate and estimated brown hyena density to be 6-10 individuals/100 km2 (an absolute abundance of between 12 and 21 individuals), which is higher than densities calculated for brown hyenas in other arid, open systems. In, addition, brown hyena scat samples were collected over a five year period from April 2011 to June 2015 and standard techniques for scat analysis were used to identify prey items. Cheetah (Acinonyx jubatus) and lion (Panthera leo) kill site data were used to investigate the impacts of these species on the diet of brown hyenas. Before the release of lions brown hyenas predominantly scavenged on medium-sized mammals, which was what the cheetahs mainly killed. However, after the release of the lions, brown hyenas predominantly scavenged on large mammals, which was what the lions primarily killed. The results from my study indicate that brown hyenas are most likely reaching high densities in enclosed systems, due to increased scavenging opportunities provided by other large predators. The rapid increase of brown hyena densities from small founder populations in enclosed reserves could result in inbreeding. Therefore, in order to successfully conserve brown hyenas and other large carnivores in South Africa, continual post-release monitoring and possible implementation of meta-population management schemes is required.
- Full Text:
- Date Issued: 2016
Predators of aerial insects and riparian cross-boundary trophic dynamics: web-building spiders, dragonflies and damselflies
- Authors: Chari, Lenin Dzibakwe
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/55791 , vital:26734
- Description: This thesis characterises the cross-boundary trophic interactions of a relatively small model ecosystem, the Kowie River (Eastern Cape of South Africa), to explore their epistemic implications for systems ecology. Using web-building spiders and odonates (dragonflies and damselflies) as model organisms, I sought to investigate whether the diets of predators of aerial insects could be used to assess the strength of the trophic connectivity between freshwater and terrestrial systems in relation to variables such as stream width, distance from the river and aquatic insect emergence rates and abundances. Predator diet composition was determined by using a combination of diet analysis tools: direct observations of cross-subsidies, naturally-abundant stable (carbon and nitrogen) isotope analysis and fatty acid analysis. I also sought to reveal feeding niches and guilds among riparian aerial predators and investigate how the environment influenced predators’ access to aquatic prey subsidies. As emergent aquatic insect abundances decreased with an increase in distance from the river, and increased with stream width and seasonal changes from winter to summer, stable isotope and fatty acid analyses revealed distinct changes in web-building spider diet composition. Examination of the fatty acid eicosapentaenoic acid, a component commonly used as an indicator of consumer reliance on aquatic nutritional subsidies, showed that aquatic subsidies extended further inland at the wider sections of the river. Spiders and odonates at the wider sections of the Kowie River generally received more subsidies (56 – 70%) than those at the narrower sections (25 – 60%). When terrestrial insect biomass was distinctly low in winter, the benefit of aquatic subsidisation to spiders was relatively lower at the narrower sections of the Kowie River relative to the wide sections. As such, riparian areas adjacent to wide parts of the river were more likely to support larger populations of aerial predators than those at the narrow sections. Apart from the diet changes across time and space, there was evidence of inter-specific niche partitioning in both spiders and odonates, but no differences were observed between males and females of the same species. Results showed odonates of different sizes and hunting strategies had separate dietary niches, hence varied access to aquatic nutritional subsidies. The larger odonate taxa that frequently foraged mid-air had more varied diets and relied less on aquatic emergent insects than the smaller odonates that foraged from perches near the river. There was also evidence of niche partitioning amongst the spiders, as those that built horizontal webs captured more aquatic insects (40 – 78%) than the vertical orb-web builders (20 – 66%). This study showed that the nature and extent of trophic cross-boundary linkages in riparian areas largely depended on the availability of subsidies that varied seasonally and spatially. The width of the stream and seasonal variability emerged as important predictors of emergent insect abundances/biomasses that influenced predator feeding niches. The high mobility of odonates made their reliance on aquatic nutritional subsidies different from the less mobile spiders. The link between the width of the river and the extent of trophic connectivity has implications for riparian area management and definition of riparian buffer zones. However, the variation in diet niches amongst terrestrial consumers makes the results area-specific, and more studies are required that incorporate additional terrestrial predators in other fluvial systems so that we can make some generalizations on the dynamics of riparian trophic cross-boundary links.
- Full Text:
- Date Issued: 2016
- Authors: Chari, Lenin Dzibakwe
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/55791 , vital:26734
- Description: This thesis characterises the cross-boundary trophic interactions of a relatively small model ecosystem, the Kowie River (Eastern Cape of South Africa), to explore their epistemic implications for systems ecology. Using web-building spiders and odonates (dragonflies and damselflies) as model organisms, I sought to investigate whether the diets of predators of aerial insects could be used to assess the strength of the trophic connectivity between freshwater and terrestrial systems in relation to variables such as stream width, distance from the river and aquatic insect emergence rates and abundances. Predator diet composition was determined by using a combination of diet analysis tools: direct observations of cross-subsidies, naturally-abundant stable (carbon and nitrogen) isotope analysis and fatty acid analysis. I also sought to reveal feeding niches and guilds among riparian aerial predators and investigate how the environment influenced predators’ access to aquatic prey subsidies. As emergent aquatic insect abundances decreased with an increase in distance from the river, and increased with stream width and seasonal changes from winter to summer, stable isotope and fatty acid analyses revealed distinct changes in web-building spider diet composition. Examination of the fatty acid eicosapentaenoic acid, a component commonly used as an indicator of consumer reliance on aquatic nutritional subsidies, showed that aquatic subsidies extended further inland at the wider sections of the river. Spiders and odonates at the wider sections of the Kowie River generally received more subsidies (56 – 70%) than those at the narrower sections (25 – 60%). When terrestrial insect biomass was distinctly low in winter, the benefit of aquatic subsidisation to spiders was relatively lower at the narrower sections of the Kowie River relative to the wide sections. As such, riparian areas adjacent to wide parts of the river were more likely to support larger populations of aerial predators than those at the narrow sections. Apart from the diet changes across time and space, there was evidence of inter-specific niche partitioning in both spiders and odonates, but no differences were observed between males and females of the same species. Results showed odonates of different sizes and hunting strategies had separate dietary niches, hence varied access to aquatic nutritional subsidies. The larger odonate taxa that frequently foraged mid-air had more varied diets and relied less on aquatic emergent insects than the smaller odonates that foraged from perches near the river. There was also evidence of niche partitioning amongst the spiders, as those that built horizontal webs captured more aquatic insects (40 – 78%) than the vertical orb-web builders (20 – 66%). This study showed that the nature and extent of trophic cross-boundary linkages in riparian areas largely depended on the availability of subsidies that varied seasonally and spatially. The width of the stream and seasonal variability emerged as important predictors of emergent insect abundances/biomasses that influenced predator feeding niches. The high mobility of odonates made their reliance on aquatic nutritional subsidies different from the less mobile spiders. The link between the width of the river and the extent of trophic connectivity has implications for riparian area management and definition of riparian buffer zones. However, the variation in diet niches amongst terrestrial consumers makes the results area-specific, and more studies are required that incorporate additional terrestrial predators in other fluvial systems so that we can make some generalizations on the dynamics of riparian trophic cross-boundary links.
- Full Text:
- Date Issued: 2016
Testing the effectiveness and cost-efficiency of livestock guarding dogs in Botswana
- Authors: Horgan, Jane Elizabeth
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5951 , http://hdl.handle.net/10962/d1021300
- Description: Livestock guarding dogs (LSGDs) have been used for centuries to reduce depredation on livestock and more recently, to facilitate the conservation of threatened predator species. Conservation NGOs (non-government organisations) in southern Africa promote the use of Anatolian Shepherds as LSGDs. However, livestock farmers in Botswana have been using a variety of different breeds for this purpose, including the local mixed-breed “Tswana” dogs. Postal, telephonic and face-to-face interview questionnaires were administered to 108 livestock farmers in Botswana to gauge how their LSGDs were being used, in order to determine what factors contributed to the success and affordability of these dogs. Eighty-three percent of farmers had LSGDs which equaled or decreased livestock depredations on their farms, with an average reduction in livestock depredation of 75% per year. This equated to an average saving of US$2,017 annually per farm. The costs of purchasing (average US$27) and maintaining the 198 LSGDs in my study (average US$169/LSGD/year) were very low compared to other countries and helped contribute to the high profits obtained by farmers (average US$1,497/farm or US$789/LSGD). A unique investigation of different breeds was possible due to the diverse array of breeds in the sample (Anatolian Shepherds, Cross Breeds, Tswana dogs, Greyhounds and Pitbulls), with the crossbreed dogs (Crosses and Tswana LSGDs) performing the best. LSGDs that reduced depredation and had minimal behavioural problems were the most likely to incite positive changes in their owners in regards to attitudes towards predators. Sixtysix percent of farmers stated that they were more tolerant of predators since obtaining a LSGD, and 51% reported that they were less likely to kill predators since obtaining a LSGD. My results indicate that successful, well-behaved LSGDs are a cost-effective tool that has the ability to increase farm productivity and improve predator-farmer conflicts in Botswana. The methods recommended in my thesis, in particular the benefits of using local breeds of dog as LSGDs, can be implemented on farming practices the world over to assist farming productivity and to promote conservation efforts.
- Full Text:
- Date Issued: 2016
- Authors: Horgan, Jane Elizabeth
- Date: 2016
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5951 , http://hdl.handle.net/10962/d1021300
- Description: Livestock guarding dogs (LSGDs) have been used for centuries to reduce depredation on livestock and more recently, to facilitate the conservation of threatened predator species. Conservation NGOs (non-government organisations) in southern Africa promote the use of Anatolian Shepherds as LSGDs. However, livestock farmers in Botswana have been using a variety of different breeds for this purpose, including the local mixed-breed “Tswana” dogs. Postal, telephonic and face-to-face interview questionnaires were administered to 108 livestock farmers in Botswana to gauge how their LSGDs were being used, in order to determine what factors contributed to the success and affordability of these dogs. Eighty-three percent of farmers had LSGDs which equaled or decreased livestock depredations on their farms, with an average reduction in livestock depredation of 75% per year. This equated to an average saving of US$2,017 annually per farm. The costs of purchasing (average US$27) and maintaining the 198 LSGDs in my study (average US$169/LSGD/year) were very low compared to other countries and helped contribute to the high profits obtained by farmers (average US$1,497/farm or US$789/LSGD). A unique investigation of different breeds was possible due to the diverse array of breeds in the sample (Anatolian Shepherds, Cross Breeds, Tswana dogs, Greyhounds and Pitbulls), with the crossbreed dogs (Crosses and Tswana LSGDs) performing the best. LSGDs that reduced depredation and had minimal behavioural problems were the most likely to incite positive changes in their owners in regards to attitudes towards predators. Sixtysix percent of farmers stated that they were more tolerant of predators since obtaining a LSGD, and 51% reported that they were less likely to kill predators since obtaining a LSGD. My results indicate that successful, well-behaved LSGDs are a cost-effective tool that has the ability to increase farm productivity and improve predator-farmer conflicts in Botswana. The methods recommended in my thesis, in particular the benefits of using local breeds of dog as LSGDs, can be implemented on farming practices the world over to assist farming productivity and to promote conservation efforts.
- Full Text:
- Date Issued: 2016
The effects of land use on the avifauna and its conservation in a Kenyan coastal forest ecosystem, and the significance of the Arabuko Sokoke Forest to the local community
- Authors: Chiawo, David O
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5950 , http://hdl.handle.net/10962/d1020946
- Description: This study examines the effects of land use on the bird community of Arabuko Sokoke Forest, the largest area of coastal forest remaining in East Africa and a major Important Bird Area in mainland Kenya. Bird species diversity in three land use types (primary forest, plantation and farm lands) was compared using multivariate analysis to determine the response of different feeding guilds to habitat characteristics. The effect of habitat characteristics on overall bird diversity and specific feeding guilds was tested using linear mixed models. A total of 2600 bird observations were recorded during point counts, representing 97 bird species including 25 fruit-eating birds, 17 nectar feeders; and 60 species belonging exclusively to other feeding guilds. Land use had a significant effect on overall bird diversity and abundance. The distribution of frugivorous birds was primarily influenced by the presence of fruiting trees rather than land use type, while nectarivores were significantly affected by vertical habitat heterogeneity and vegetation type. Although the distribution of insectivorous birds is influenced by many habitat factors, proximity to natural forest, habitat heterogeneity, and the presence of large trees and fruiting trees appear to be most important to this guild. The natural forest has the greatest avian diversity and a distinctive community compared to plantation and farmlands. Patterns of habitat use by birds in the area suggest that vertical vegetation heterogeneity and complexity is especially significant in sustaining diverse and abundant bird populations, if they are in close proximity to native forests. Improvement of conservation management for the plantation and farmlands is thus critical for connectivity with other remnant primary forest patches in the area. Socio-economic data was collected from 109 forest adjacent households to determine the value of the forest to the local community and their perception of conservation issues. Arabuko Sokoke Forest is important in supplementing the livelihood needs of the local community. However, the community lacks information on the forest management plan and many people have little knowledge of local birds, which could limit their capacity to participate in conservation projects. Drivers for local community participation in conservation projects are primarily a sustainable income and the fulfillment of basic household needs. Community conservation education is needed to promote local knowledge of forest biodiversity, as well as clear frameworks for the active involvement of the local community in forest management. Support of community based projects is vital to achieve both the conservation and livelihood objectives of the Arabuko Sokoke Forest management plan.
- Full Text:
- Date Issued: 2016
- Authors: Chiawo, David O
- Date: 2016
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5950 , http://hdl.handle.net/10962/d1020946
- Description: This study examines the effects of land use on the bird community of Arabuko Sokoke Forest, the largest area of coastal forest remaining in East Africa and a major Important Bird Area in mainland Kenya. Bird species diversity in three land use types (primary forest, plantation and farm lands) was compared using multivariate analysis to determine the response of different feeding guilds to habitat characteristics. The effect of habitat characteristics on overall bird diversity and specific feeding guilds was tested using linear mixed models. A total of 2600 bird observations were recorded during point counts, representing 97 bird species including 25 fruit-eating birds, 17 nectar feeders; and 60 species belonging exclusively to other feeding guilds. Land use had a significant effect on overall bird diversity and abundance. The distribution of frugivorous birds was primarily influenced by the presence of fruiting trees rather than land use type, while nectarivores were significantly affected by vertical habitat heterogeneity and vegetation type. Although the distribution of insectivorous birds is influenced by many habitat factors, proximity to natural forest, habitat heterogeneity, and the presence of large trees and fruiting trees appear to be most important to this guild. The natural forest has the greatest avian diversity and a distinctive community compared to plantation and farmlands. Patterns of habitat use by birds in the area suggest that vertical vegetation heterogeneity and complexity is especially significant in sustaining diverse and abundant bird populations, if they are in close proximity to native forests. Improvement of conservation management for the plantation and farmlands is thus critical for connectivity with other remnant primary forest patches in the area. Socio-economic data was collected from 109 forest adjacent households to determine the value of the forest to the local community and their perception of conservation issues. Arabuko Sokoke Forest is important in supplementing the livelihood needs of the local community. However, the community lacks information on the forest management plan and many people have little knowledge of local birds, which could limit their capacity to participate in conservation projects. Drivers for local community participation in conservation projects are primarily a sustainable income and the fulfillment of basic household needs. Community conservation education is needed to promote local knowledge of forest biodiversity, as well as clear frameworks for the active involvement of the local community in forest management. Support of community based projects is vital to achieve both the conservation and livelihood objectives of the Arabuko Sokoke Forest management plan.
- Full Text:
- Date Issued: 2016
The trophic ecology of waterbirds in a small temperate estuary: a stable isotope and lipid tracer approach
- Authors: Hean, Jeffrey William
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/54356 , vital:26557
- Description: Waterbirds are often overlooked as predators in aquatic ecosystems, despite the fact that waterbirds congregate in great numbers in and around waterways, notably estuaries. To fully appreciate the effect that aquatic feeding waterbird species may have on aquatic prey communities and the role that they play in estuarine food webs, stable isotopes and fatty acid profiles were employed to examine the seasonal diet of selected waterbirds in the Kowie Estuary, Eastern Cape Province, South Africa. Population counts were conducted every month for four seasons to examine the demography of waterbirds in the lower reaches of the estuary. The mean monthly energy consumption, along with dry matter intake of all waterbird species observed, were calculated and compared to similar estuaries in South Africa and elsewhere. Three duck species, one migrant sandpiper and one piscivore were selected for more detailed investigation at several temporal scales. This thesis has revealed that stable isotope analysis of waterbird tissues provides more informative data than fatty acid analysis for investigating waterbird diet and basal resource-tertiary consumer nutrient coupling. Stable δ15N and δ13C isotopes from several body tissues, in conjunction with SIAR models, were used to determine the seasonal diet of each waterbird species, while fatty acid profiles were investigated to examine the trophic transfer of fatty acids from basal resources to waterbird predators via the benthic fauna. Stable isotopes revealed that Cape Shoveller, Cape Teal and Yellow-Billed Duck shifted their diet over both long and short temporal scales, while the migratory Ruff and piscivorous Little Egret maintained a relatively consistent diet over time. Isopods, amphipods, copepods and Mysidacea were the main foods of all three duck species and the Ruff (>30%). Little Egret fed mainly on flathead mullet throughout the year. Fatty acid analysis revealed evidence for trophic transfer of specific fatty acids from basal resources to waterbirds in the Kowie Estuary but provided little information on seasonal diet of waterbirds. Waterbirds foraging in the Kowie Estuary appeared to shift their diet to coincide with resource abundance pulses, but also displayed seasonal dietary overlap. This study highlights the role that waterbirds play in aquatic food webs. The subject requires more attention so that we can better understand all the predatory drivers on aquatic communities.
- Full Text:
- Date Issued: 2016
- Authors: Hean, Jeffrey William
- Date: 2016
- Language: English
- Type: text , Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10962/54356 , vital:26557
- Description: Waterbirds are often overlooked as predators in aquatic ecosystems, despite the fact that waterbirds congregate in great numbers in and around waterways, notably estuaries. To fully appreciate the effect that aquatic feeding waterbird species may have on aquatic prey communities and the role that they play in estuarine food webs, stable isotopes and fatty acid profiles were employed to examine the seasonal diet of selected waterbirds in the Kowie Estuary, Eastern Cape Province, South Africa. Population counts were conducted every month for four seasons to examine the demography of waterbirds in the lower reaches of the estuary. The mean monthly energy consumption, along with dry matter intake of all waterbird species observed, were calculated and compared to similar estuaries in South Africa and elsewhere. Three duck species, one migrant sandpiper and one piscivore were selected for more detailed investigation at several temporal scales. This thesis has revealed that stable isotope analysis of waterbird tissues provides more informative data than fatty acid analysis for investigating waterbird diet and basal resource-tertiary consumer nutrient coupling. Stable δ15N and δ13C isotopes from several body tissues, in conjunction with SIAR models, were used to determine the seasonal diet of each waterbird species, while fatty acid profiles were investigated to examine the trophic transfer of fatty acids from basal resources to waterbird predators via the benthic fauna. Stable isotopes revealed that Cape Shoveller, Cape Teal and Yellow-Billed Duck shifted their diet over both long and short temporal scales, while the migratory Ruff and piscivorous Little Egret maintained a relatively consistent diet over time. Isopods, amphipods, copepods and Mysidacea were the main foods of all three duck species and the Ruff (>30%). Little Egret fed mainly on flathead mullet throughout the year. Fatty acid analysis revealed evidence for trophic transfer of specific fatty acids from basal resources to waterbirds in the Kowie Estuary but provided little information on seasonal diet of waterbirds. Waterbirds foraging in the Kowie Estuary appeared to shift their diet to coincide with resource abundance pulses, but also displayed seasonal dietary overlap. This study highlights the role that waterbirds play in aquatic food webs. The subject requires more attention so that we can better understand all the predatory drivers on aquatic communities.
- Full Text:
- Date Issued: 2016
A flight of fancy in the Chorister Robin-Chat (Cossypha dichroa) : an isotopic standpoint
- Wolmarans, Milena Helena Louise
- Authors: Wolmarans, Milena Helena Louise
- Date: 2015
- Subjects: Muscicapidae -- South Africa , Muscicapidae -- Food , Muscicapidae -- Habitat , Muscicapidae -- Habitat -- Conservation , Forest birds -- South Africa , Isotopes , Stable isotope tracers
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5920 , http://hdl.handle.net/10962/d1017207
- Description: Forested areas have been cited for their highly diverse floral and faunal assemblages, which are currently under threat from anthropogenic activities that restrict their range and deplete the resources produced within these naturally fragmented patches. Historically, up to 67 percent of avifaunal species associated with well-treed areas have undergone localised extinctions, consequentially affecting biodiversity as a measure of species richness and ecosystem functionality. To date, more than 900 of the bird species affiliated with forests are under threat and despite the theory surrounding functional redundancy, the mass extinction that is currently underway poses considerable limitations on the ecological integrity of these biomes. In South Africa, indigenous forest (one of the rarest biomes), occurs predominantly in small isolated patches along the eastern escarpment. With mountainous terrain emphasised as ‘prominent hotspots of extinction’, the limited dispersal and habitat sensitivity of montane forest fauna renders these species more prone to localised extinctions. BirdLife International, the IUCN and SABAP2 all indicate reductions in the range and abundance of the Chorister Robin-Chat (Cossypha dichroa) - an endemic forest specialist that is reported to move seasonally between high-altitude forest patches where they breed in summer, and lowland coastal forests where they overwinter. Beyond diet, body morphology and vocalisations, much of the information available on the altitudinal movements of C. dichroa is based on secondary sources and the assumptions therein. This study aimed to investigate the potential utilisation of δ13C and δ15N stable isotopes in determining the dietary niche width and altitudinal movements of C. dichroa. Feathers obtained in forested patches of the Limpopo, KwaZulu-Natal and Eastern Cape provinces exhibited a wide trophic niche width and generalised diet. Strong regional separation is apparent in the isotopic signatures suggesting little movement between provinces. A comparison of 13C-isotopes showed minimal variation that point to a uniformity in the carbon-base utilised by C. dichroa across their range. The 15N-signatures obtained in Limpopo, however, revealed a distinct trophic segregation between the northern-most Chorister populations and their southern counterparts. No altitudinal movements were detected in the isotopic signatures of recaptured Choristers, but more research is needed to investigate the long-term accuracy of these results and the breeding potential of resident Choristers in lowland coastal forests; especially when considering the reduced range and abundance reported for this endemic species.
- Full Text:
- Date Issued: 2015
- Authors: Wolmarans, Milena Helena Louise
- Date: 2015
- Subjects: Muscicapidae -- South Africa , Muscicapidae -- Food , Muscicapidae -- Habitat , Muscicapidae -- Habitat -- Conservation , Forest birds -- South Africa , Isotopes , Stable isotope tracers
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5920 , http://hdl.handle.net/10962/d1017207
- Description: Forested areas have been cited for their highly diverse floral and faunal assemblages, which are currently under threat from anthropogenic activities that restrict their range and deplete the resources produced within these naturally fragmented patches. Historically, up to 67 percent of avifaunal species associated with well-treed areas have undergone localised extinctions, consequentially affecting biodiversity as a measure of species richness and ecosystem functionality. To date, more than 900 of the bird species affiliated with forests are under threat and despite the theory surrounding functional redundancy, the mass extinction that is currently underway poses considerable limitations on the ecological integrity of these biomes. In South Africa, indigenous forest (one of the rarest biomes), occurs predominantly in small isolated patches along the eastern escarpment. With mountainous terrain emphasised as ‘prominent hotspots of extinction’, the limited dispersal and habitat sensitivity of montane forest fauna renders these species more prone to localised extinctions. BirdLife International, the IUCN and SABAP2 all indicate reductions in the range and abundance of the Chorister Robin-Chat (Cossypha dichroa) - an endemic forest specialist that is reported to move seasonally between high-altitude forest patches where they breed in summer, and lowland coastal forests where they overwinter. Beyond diet, body morphology and vocalisations, much of the information available on the altitudinal movements of C. dichroa is based on secondary sources and the assumptions therein. This study aimed to investigate the potential utilisation of δ13C and δ15N stable isotopes in determining the dietary niche width and altitudinal movements of C. dichroa. Feathers obtained in forested patches of the Limpopo, KwaZulu-Natal and Eastern Cape provinces exhibited a wide trophic niche width and generalised diet. Strong regional separation is apparent in the isotopic signatures suggesting little movement between provinces. A comparison of 13C-isotopes showed minimal variation that point to a uniformity in the carbon-base utilised by C. dichroa across their range. The 15N-signatures obtained in Limpopo, however, revealed a distinct trophic segregation between the northern-most Chorister populations and their southern counterparts. No altitudinal movements were detected in the isotopic signatures of recaptured Choristers, but more research is needed to investigate the long-term accuracy of these results and the breeding potential of resident Choristers in lowland coastal forests; especially when considering the reduced range and abundance reported for this endemic species.
- Full Text:
- Date Issued: 2015
Aquatic invasions of the Nseleni River system: causes, consequences and control
- Authors: Jones, Roy William
- Date: 2015
- Subjects: Gastropoda -- South Africa , Introduced snails -- South Africa , Introduced mollusks -- South Africa , Loricariidae , Introduced fishes -- South Africa , Water hyacinth , Alien plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5928 , http://hdl.handle.net/10962/d1017806
- Description: Globalization has seen an unprecedented dispersal of exotic and alien species worldwide resulting in worldwide homogenization and sometimes extinction of indigenous or endemic taxa. When an exotic species becomes established in a new habitat the invasive organisms are capable of having an impact on indigenous community dynamics and the overall structure and function of ecosystems. Furthermore, the impact of invasion is determined by the geographical range, abundance and the per-capita or per-biomass effect of the invader. However, the success of the introduced organisms is reliant on their ability to acclimate to the physiochemical conditions of the newly invaded environment.Freshwater ecosystems are especially vulnerable to invasions because there are numerous potential routes of introduction including intentional pathways such as stocking, and unintentional pathways such as the release of ballast water and aquarium releases. Efforts to limit the introduction of invasive species or to manage established exotic populations are often hindered by insufficient understanding of the natural history of problematic species. Relatively little is known regarding the physiological tolerances of many taxa. Knowledge about specific species ecophysiological constraints allows for the prediction of future patterns of invasion more accurately, including where an introduced organism would probably survive, thrive and disperse. Furthermore, data on the physiological tolerances of an introduced exotic organism may provide data necessary for effective management and control. This studyinvestigated three invasive species in the Nseleni River system in a protected area in KwaZulu-Natal. The species studied were, Tarebia granifera (Quilted melania – Lamarck, 1822), Pterygoplichthys disjunctivus (Suckermouth armoured catfish - Weber, 1991) and Eichhornia crassipes (water hyacinth – (Martius) Solms-Laubach,). The Nseleni River flows into Lake Nsezi which is responsible for providing potable water to the surrounding towns and industry, as well as the surrounding rural communities. The Enseleni Nature reserve has become the centre for biodiversity dispersal in the immediate area, due to the change in landscape surrounding the protected area.An important step in developing alien invasive species management strategies in protected areas is determining their extent and invasive traits. Tarebia granifera is a prosobranch gastropod originally from South-East Asia that has become invasive in several countries around the world including South Africa. Snail populations were sampled at nine sites throughout the Nseleni/Mposa river system every six weeks over a twelve month period. The snail was abundant throughout the system, especially in shallow waters of less than 1m in depth.The first positive identification the loricariid catfish Pterygoplichthys disjunctivus for the Nseleni River was in 2006. The original introduction is believed to have been via the aquarium trade. The aim of the study was to assess the usefulness of the unified framework with regard to management of fish invasions by assessing the invasion stage of the loricariid population and identifying appropriate management actions using the Blackburn et al. (2011) framework. The fish were sampled at nine different sites and three different depths over a period of twelve months, as well as when two ichthyological surveys were carried out on the Nseleni River system. This invasive fish has been located throughout the system and both male and female fish were collected. The smallest fish sampled was a fingerling of a day or two old and the smallest pregnant female was a mere 270mm TL. This is a clear indication that this fish is breeding in the river system.Although T. granifera and P. disjunctivus were abundant in the Nseleni/Mposa river system, it was not clear what their role in the system was, and in particular if they were competing with any of the indigenous species. Therefore, isotope samples were collected from numerous taxa over a two week period, with the exception of Pterygoplichthys disjunctivus samples, which were collected over 12 months. The δ13C and δ15N signatures of all samples were determined. The niche overlap between the invasive and indigenous snails was effectively zero (1.02E-13%), indicating no shared food resources. The medium ranges of dNRb (7.14) and dCRb (9.07) for the invasive fish indicate that it utilizes a wider range of food resources and trophic levels than the majority of indigenous fish. A medium CDb value (2.34) for the invasive fish species, P. disjunctivus, describes medium trophic diversity, with three indigenous species possessing higher diversity and three possessing lower diversity. Furtherresults indicated that there was no direct dietary competition between P. disjunctivus and indigenous species. Eichhornia crassipes was first recorded on the Nseleni River in 1978, and has been shown to have a significant negative impact on the biodiversity of the Nseleni/Mposa River system and therefore required a control intervention. Although biological control using the two weevil species Neochetina eichhornia (Warner) and N. bruchi (Hustache) has been credited with affecting a good level of control, the lack of a manipulated post-release evaluation experiments has undermined this statement. Five experimental plots of water hyacinth of 20m2 were sprayed with an insecticide to control weevils. After ten months the plants in the sprayed plots were significantly bigger and heavier than those in the control plots that had natural populations of the biological control agents. This study has shown unequivocally that biological control has contributed significantly to the control of water hyacinth on the Nseleni/Mposa River system.The management plan for the Enseleni Nature Reserve identifies the need to control invasive and/or exotic organisms within the boundary of the protected area. In addition, set guidelines have been implemented on how to control these organisms, so that indigenous organisms are least affected. Lack of control of exotic organisms can have serious consequences for indigenous species. It is therefore of utmost importance that the population dynamics of the invading organism be understood, what the potential impact could be and how to control them. Furthermore, it has also acknowledged the threat of possible exotic species invasions from outside of the protected area that might result in threats to the protected area and that these must be investigated, researched and managed.This thesis has identified Tarebia granifera, Pterygoplichthys disjunctivus and Eichhornia crassipes as being a threat to indigenous biodiversity within the protected area, as well as in adjacent areas to the protected area. The thesis will therefore investigate the hypothesis that both Tarebia granifera and Pterygoplichthys disjunctivus are having a direct negative effect on available food resources for indigenous species of organisms. In addition, this thesis will investigate if theNeochetina species that have previously been introduced onto E. crassipes are having any negative effect on this invasive alien aquatic plant.
- Full Text:
- Date Issued: 2015
- Authors: Jones, Roy William
- Date: 2015
- Subjects: Gastropoda -- South Africa , Introduced snails -- South Africa , Introduced mollusks -- South Africa , Loricariidae , Introduced fishes -- South Africa , Water hyacinth , Alien plants -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: vital:5928 , http://hdl.handle.net/10962/d1017806
- Description: Globalization has seen an unprecedented dispersal of exotic and alien species worldwide resulting in worldwide homogenization and sometimes extinction of indigenous or endemic taxa. When an exotic species becomes established in a new habitat the invasive organisms are capable of having an impact on indigenous community dynamics and the overall structure and function of ecosystems. Furthermore, the impact of invasion is determined by the geographical range, abundance and the per-capita or per-biomass effect of the invader. However, the success of the introduced organisms is reliant on their ability to acclimate to the physiochemical conditions of the newly invaded environment.Freshwater ecosystems are especially vulnerable to invasions because there are numerous potential routes of introduction including intentional pathways such as stocking, and unintentional pathways such as the release of ballast water and aquarium releases. Efforts to limit the introduction of invasive species or to manage established exotic populations are often hindered by insufficient understanding of the natural history of problematic species. Relatively little is known regarding the physiological tolerances of many taxa. Knowledge about specific species ecophysiological constraints allows for the prediction of future patterns of invasion more accurately, including where an introduced organism would probably survive, thrive and disperse. Furthermore, data on the physiological tolerances of an introduced exotic organism may provide data necessary for effective management and control. This studyinvestigated three invasive species in the Nseleni River system in a protected area in KwaZulu-Natal. The species studied were, Tarebia granifera (Quilted melania – Lamarck, 1822), Pterygoplichthys disjunctivus (Suckermouth armoured catfish - Weber, 1991) and Eichhornia crassipes (water hyacinth – (Martius) Solms-Laubach,). The Nseleni River flows into Lake Nsezi which is responsible for providing potable water to the surrounding towns and industry, as well as the surrounding rural communities. The Enseleni Nature reserve has become the centre for biodiversity dispersal in the immediate area, due to the change in landscape surrounding the protected area.An important step in developing alien invasive species management strategies in protected areas is determining their extent and invasive traits. Tarebia granifera is a prosobranch gastropod originally from South-East Asia that has become invasive in several countries around the world including South Africa. Snail populations were sampled at nine sites throughout the Nseleni/Mposa river system every six weeks over a twelve month period. The snail was abundant throughout the system, especially in shallow waters of less than 1m in depth.The first positive identification the loricariid catfish Pterygoplichthys disjunctivus for the Nseleni River was in 2006. The original introduction is believed to have been via the aquarium trade. The aim of the study was to assess the usefulness of the unified framework with regard to management of fish invasions by assessing the invasion stage of the loricariid population and identifying appropriate management actions using the Blackburn et al. (2011) framework. The fish were sampled at nine different sites and three different depths over a period of twelve months, as well as when two ichthyological surveys were carried out on the Nseleni River system. This invasive fish has been located throughout the system and both male and female fish were collected. The smallest fish sampled was a fingerling of a day or two old and the smallest pregnant female was a mere 270mm TL. This is a clear indication that this fish is breeding in the river system.Although T. granifera and P. disjunctivus were abundant in the Nseleni/Mposa river system, it was not clear what their role in the system was, and in particular if they were competing with any of the indigenous species. Therefore, isotope samples were collected from numerous taxa over a two week period, with the exception of Pterygoplichthys disjunctivus samples, which were collected over 12 months. The δ13C and δ15N signatures of all samples were determined. The niche overlap between the invasive and indigenous snails was effectively zero (1.02E-13%), indicating no shared food resources. The medium ranges of dNRb (7.14) and dCRb (9.07) for the invasive fish indicate that it utilizes a wider range of food resources and trophic levels than the majority of indigenous fish. A medium CDb value (2.34) for the invasive fish species, P. disjunctivus, describes medium trophic diversity, with three indigenous species possessing higher diversity and three possessing lower diversity. Furtherresults indicated that there was no direct dietary competition between P. disjunctivus and indigenous species. Eichhornia crassipes was first recorded on the Nseleni River in 1978, and has been shown to have a significant negative impact on the biodiversity of the Nseleni/Mposa River system and therefore required a control intervention. Although biological control using the two weevil species Neochetina eichhornia (Warner) and N. bruchi (Hustache) has been credited with affecting a good level of control, the lack of a manipulated post-release evaluation experiments has undermined this statement. Five experimental plots of water hyacinth of 20m2 were sprayed with an insecticide to control weevils. After ten months the plants in the sprayed plots were significantly bigger and heavier than those in the control plots that had natural populations of the biological control agents. This study has shown unequivocally that biological control has contributed significantly to the control of water hyacinth on the Nseleni/Mposa River system.The management plan for the Enseleni Nature Reserve identifies the need to control invasive and/or exotic organisms within the boundary of the protected area. In addition, set guidelines have been implemented on how to control these organisms, so that indigenous organisms are least affected. Lack of control of exotic organisms can have serious consequences for indigenous species. It is therefore of utmost importance that the population dynamics of the invading organism be understood, what the potential impact could be and how to control them. Furthermore, it has also acknowledged the threat of possible exotic species invasions from outside of the protected area that might result in threats to the protected area and that these must be investigated, researched and managed.This thesis has identified Tarebia granifera, Pterygoplichthys disjunctivus and Eichhornia crassipes as being a threat to indigenous biodiversity within the protected area, as well as in adjacent areas to the protected area. The thesis will therefore investigate the hypothesis that both Tarebia granifera and Pterygoplichthys disjunctivus are having a direct negative effect on available food resources for indigenous species of organisms. In addition, this thesis will investigate if theNeochetina species that have previously been introduced onto E. crassipes are having any negative effect on this invasive alien aquatic plant.
- Full Text:
- Date Issued: 2015