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Computational fluid dynamics design and performance testing of a cyclone heat exchanger used in a gasification plant

  • Authors: George, Tomy
  • Date: 2019
  • Subjects: Computational fluid dynamics Renewable energy sources Biomass gasification
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/19087 , vital:39877
  • Description: Renewable energy resources are considered to be the most promising source of energy in the coming centuries owing to its potential to get replenished by the nature itself. However, there are a number of challenges that are to be addressed prior to considering a particular resource as a reliable and effective one according to the energy demand fluctuations. Energy extracted from the biomass available in the nature has a lot of potential especially in the case of producing energy from syngas produced by the controlled burning of wood. This research deals with the minimisation of energy wastage in a gasification plant where syngas is produced from wood and transferred to an internal combustion engine to further generate electrical energy. The syngas produced from the wood is to be fed through a cyclone for purification before it can be fed into the IC engine, where the dust, carbon and other impurities are separated from the syngas by making use of the centrifugal force developed inside the cyclone. This syngas is further cooled and fed into the IC engine in its purest form as specified by the requirements of the engine. It is envisaged that if it is possible to recover the heat energy otherwise wasted in the cyclone and through the cooling circuit, it can be used for preheating the wood or for other minor heating purposes, and thereby the heat wastage can be minimised. Therefore, in this research, a series of numerical investigation conducted which involved the modelling of heat exchanger around a cyclone in order to extract heat from the surface of the cyclone. Two basic design of the Heat exchanger were considered in the study, a rectangular and a conical design. With a water flow rate of 2 l/min in conical design, the heat absorbed by the water was found to be 5.555 kJ/s and in rectangular design, the heat absorbed by the water was 4.872 kJ/s. An experimental analysis conducted to validate the simulation by a rectangular Heat exchanger shows the amount of heat absorbed by the water is 4.87 kJ/s. In a study with variable water flow rate through the jacket, it is observed that heat absorbed by the water in conical heat exchanger is more than heat absorbed by the water in rectangular jacket within the flow rate of 4 l/min. and the heat absorbed by the water in rectangular heat exchanger is higher than conical heat exchanger with water flow rate above 4 l/min.
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  • Date Issued: 2019

Design and Characterization of a 5 kw Xe-Lamp Solar Simulator

  • Authors: Nwodo, Julian Chizoba
  • Date: 2019
  • Subjects: Solar energy
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/14671 , vital:40042
  • Description: The design and characterisation of a 5kW Xenon lamp solar simulator is presented. This was accomplished through considering the design features of an ellipsoidal reflector, Xe lamp characteristics and casing, and power supply; assembly of an ellipsoidal, Xe-lamp simulator; design and building of an automated control system capable of remotely controlling the operating mode of the simulator; establishing the 3 scenarios that must be met to conform to a AAA class simulator; characterization of the simulator in terms of temporal stability, irradiance uniformity and spectral match; and application of the simulator and comparing it with STC rated values. The considerations for the type of material used for housing the components of the solar simulator were made. A 5kW DC power supply and igniter for the Xe-lamp was carefully selected since they provide necessary power for running the simulator. The simulator has the ability to be used in either horizontal or vertical position by adjusting the reflector. An automated control system capable of remotely controlling the operating mode of the simulator was built for this study, this system enables the simulator to be operated in either auto or manual modes. It also incorporates an irradiance, temperature, current and voltage feedback. The characterisation of the solar simulator was over a 2.1 m X 1.6 m test plane. The area under which the characterisation was carried out within the test plane is 110 cm x 129.5 cm. At the end of the steady state large area solar simulator characterisation, a class A spectral match, class A spatial uniformity, and a class B temporal instability was obtained
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  • Date Issued: 2019

Development of an Extensible Framework for Easy Implementation of Image Processing Applications on Android Operating System

  • Authors: Gunu, Bulelani
  • Date: 2019
  • Subjects: Operating systems (Computers)
  • Language: English
  • Type: Thesis , Masters , MSc (Computer Science )
  • Identifier: http://hdl.handle.net/10353/17201 , vital:40865
  • Description: Image processing is a field that has been in existence for many years and it continues to grow with many other research areas adopting its use. One such research area is the area of mobile devices. Mobile devices have been equipped with image processing software and hardware so as to apply image processing features. While there are many applications of image processing and new applications have been developed, there are still many functionalities that these image processing software perform the same. The development of these software from scratch requires a lot of effort and can be time consuming. This becomes even worse for mobile device application developers, specifically Android developers, who have no knowledge of implementing image processing functionalities. This project offers a software framework which allows Android application developers to focus on their unique requirements while incorporating image processing features into their applications. The framework provides the common image processing functionalities and Android developers do not need to know the internal working of the framework in order to use it. This helps reduce application development time and effort. The framework also offers an extensibility feature which takes into consideration the future growth. This means that third party developers can keep the framework up to date with the technological advancements. The presented framework is shown to be requiring less technical expertise. Also, the way in which the system is design makes it easy to understand. This design can be adopted for other related projects that require extensible frameworks for the Android operating system.
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  • Date Issued: 2019

Distribution of virulence determinants in some members of the ESKAPE pathogens isolated from selected hospital wastewater effluents in the Eastern Cape, South Africa

  • Authors: Mapipa, Qaqamba
  • Date: 2019
  • Subjects: Effluent quality Water -- Purification
  • Language: English
  • Type: Thesis , Masters , MSc (Microbiology)
  • Identifier: http://hdl.handle.net/10353/14704 , vital:40061
  • Description: Members of ESKAPE pathogens are grouped under the acronymn made up of Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species. ESKAPE pathogens, isolated from hospitals and communities, have just been characterized for new pathogenesis and transmission patterns and overcoming the usefulness of available drugs, this leads to infections that tend to increase the rate of disease in a population and death rate and cost our society massively. The distribution of virulence determinants and the antibiotic susceptibility patterns in some members of the ESKAPE pathogens isolated from hospital wastewater facilities that were selected within the Eastern Cape Province, South Africa was evaluated. Water samples from the hospital wastewater facilities were collected fortnightly over a period of three (3) months (February to April). Spread plate technique was employed for the enumeration and isolation of the members of ESKAPE pathogens. A total of 725 presumptive ESKAPE isolates were collected, screened and Polymerase Chain Reaction (PCR) amplification of target determinants was performed. Results showed that Klebsiella pneumoniae tested positive for ninety two (92=35.9%) samples, Enterobacter cloacae fifty seven (57=22.2%) samples tested positive, Pseudomonas aeruginosa fifty four (54=21.09%) isolates tested positive and fifty three (53=20.7%) isolates tested positive for Acinetobacter baumannii making a total of 256 isolates which tested positive for some members of ESKAPE pathogens. The detection of some members of the ESKAPE pathogens in these Hospitals is a cause of concern to public health. A total of 256 ESKAPE isolates that were obtained from the hospital wastewater facilities; were subjected to antibiotic susceptibility test in order to determine their antibiotic-resistant profiles. ESKAPE isolates recovered from the three hospital effluents showing resistance to antimicrobial agents in this study were further evaluated for resistance determinants namely, sulfonamides resistance determinants (sulI and sulII), β-lactams (ampC, blaTEM and blaZ), tetracyclines (tetA, tetB, tetC and tetM), 10 chloramphenicol’s (catI and catII) and aminoglycoside resistance determinants (aacC2, apHAI and apHAII). The resistant determinants targeted have been evaluated through their prevalence and the following distributions were obtained: [β-Lactams; ampC (80%), blaTEM (77%)]; [Tetracyclines; tetA (87%)]; [Sulfonamides; sulI (79%)]; [Aminoglycosides; aacC2 (12%), aphA2 (52%) and aadA (18%)]. With the worldwide increase in these resistant occurrences, the execution of strict infection control policies and treatment with different antimicrobials needs hasty detection. Comprehensive data are therefore needed so that the history of infection, identification of genes present in organisms and monitoring of changes in infection patterns can be traced correctly.
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  • Date Issued: 2019

Diversity, host plant range and ecology of Lepidoptera stem borers in South Africa

  • Authors: Stemele, Mxolisi Arnold
  • Date: 2019
  • Subjects: Lepidoptera Host plants Stem borers
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10353/15409 , vital:40405
  • Description: The biology and ecology of Lepidopteran pests stem borers has been extensively studied because of the economic importance of pest species such as Busseola fusca (Fuller) (Noctuidae), Sesamia calamistis (Hampson) (Noctuidae), Chilo partellus (Swinhoe) (Crambidae), and Eldana saccharina (Walker) (Pyralidae). Knowledge relating to diversity, infestation dynamics, and host plant range is readily available. In natural vegetation, the variety of stem borers is higher than that found in agroecosystems. However, there is a paucity of South African studies that explain the observed differences in diversity between the two systems. Stem borers are also known to exhibit species-specific ecological requirements, which influence their distribution between African countries. South African biomes are classified based on vegetation structure and climate, which happens to be the most critical factors that affect the distribution of phytophagous insects. This makes biomes an excellent model to investigate diversity and distribution of stem borer species. In this study, we investigated diversity, distribution and species composition in four biomes. The results showed that diversity and distribution of the stem borers in natural vegetation was determined by host plant distribution. Stem borer diversity correlated with high diversity of host plants. Thirty-two stem borer species were collected from 27 host plants and another three from light traps. Widely distributed host plants supported a higher diversity of stem borers, which is consistent with the resource availability hypotheses. Non-metric dimensional scale unfolding revealed disparity in host plant preference and plant species composition between the various stem borer families (Kruskal’s Stress = 0.16). Tortricidae species and Sesamia typhae (Le rü) (Noctuidae) feed exclusively on hydrophytic Cyperaceae species. The majority of Noctuidae, Crambidae and Phycitidae species collected were oligophagous on terrestrial Poaceae, with a few polyphagous exceptions feeding on hydrophytic Cyperaceae and Typhaceae. Additionally, species composition of Poaceae host plants differed between 8 Crambidae and the Phycitidae species. Stem borer species composition between biomes revealed the presence of distinct host plants (2D stress = 0.09) and stem borer (2D stress = 0.13) communities. The stem borer abundance and diversity were strongly correlated (R2 = 0.64), but species diversity (R2 = - 0.95) and host plant diversity (R2 = - 0.85) were inversely correlated to altitude. Based on these results it was concluded that stem borer diversity and distribution in natural vegetation was influenced by host plant diversity and distribution as well as climate associated with altitudinal gradients. In the last two decades, four stem borer species previously known on wild host plants; Busseola segeta (Bowden), Busseola phaia (Bowden), Pirateolea piscator (Fletcher) and Conicofrontia sesamoides (Hampson) have invaded cultivated crops. These invasions remained undetected because of a shortage of surveys, habitat transformation and misidentifications. Misidentifications are common among stem borers due to the considerable resemblance between morphospecies. In this study, we assessed the capacity of the mitochondrial gene Cytochrome c oxidase (COI) to delineate closely related species to develop monitoring and early detection of invasive species and to assess migration patterns and gene flow between the populations. The results demonstrated that COI is an effective DNA marker for species delineation and assessment of intra- and interspecific genetic relationship. The K2P distances and phylogenetic tree defined boundaries between Noctuidae species with high resolution. No divergence distance was detected between intraspecific species, but for the congener species, divergence distance was 0.044%-0.111% with an average of 0.076%. The average interspecies K2P distance (0.57%) was 5-15 times higher than the congener species distances. Phylogenetic analysis revealed the presence of two clades. Busseola and Sesamia species were connected in a monophyletic clade with a strong (93%) bootstrap. The second monophyletic clade comprised of a cluster of Pirateolea, Acrapex and Conicofrontia species, and this was also supported with 9 a strong bootstrap (100%). The gene flow study revealed low levels of genetic differentiation between the populations of B. fusca collected from different maize producing areas in South Africa. This low genetic differentiation was consistent with high gene flow. The number of effective migrants between the populations was between 8 and 99 individuals per generation. These results indicate high connectivity between the populations.
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  • Date Issued: 2019

Effect of dietary Mucuna pruriens seed meal on the serum lipid profile and bone quality traits of broiler chickens

  • Authors: Hempe, Chumani
  • Date: 2019
  • Subjects: Legumes Lipoproteins
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/17213 , vital:40866
  • Description: This study aimed at evaluating the effects of heated Mucuna pruriens seed meal on the blood serum lipid profile and bone quality parameters of broiler chickens. A total of 120 day-old unsexed Cobb 500 broiler chicks were randomly allocated for the 4 treatment diets (T1, T2, T3 and T4) containing 0, 10, 15, and 20% heated Mucuna pruriens seed meal. The birds were reared on wood shaving floor pens for 35 days. Birds were humanely slaughtered by severing the jugular vein using a sharp knife. Blood was collected into a tube, centrifuge and analyzed for a lipid profile analysis (total cholesterol (TC), high density lipoproteins (HDL), low density lipoproteins (LDL), triglycerides (TCD) as well as aspartate transaminase (AST) and alanine transaminase (ALT)) by enzymatic diagnostic kits (Diasys diagnostic kits). Both drumsticks severed using a sharp knife. After boiling in the water at 100°C for 10 mins the tibia bones were taken, air-dried for 96 hrs at room temperature and measured for weights. Bone length, strength, moisture and ash content as well as morphology were measured. The blood lipid profile of birds fed T1 was high (P < 0.05) for all the parameters measured, while T3 had the lowest (P < 0.05) profile. T2 and T4 had the same profile. ALT was found to be highest (P < 0.05) for T4 (5.27 ± 0.207/L) and lowest (P < 0.05) for T2 (4.67 ± 0.333/L) while AST was highest (P < 0.05) for T2 (320.13 ± 28.851/L) and lowest (P < 0.05) for T3 (208.47 ± 10.059/L). Treatment diet 3 (T3) was observed decreased bone quality among all diets; with the lowest (P < 0.05) bone strength (188.55 ± 12.039N), bone length (8.59 ± 0.131cm) and morphology (1.69 ± 0.058). Mucuna pruriens seed meal inclusion in broiler diets reduces blood serum lipids and 20% inclusion levels have no adverse effects on the bone quality attributes
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  • Date Issued: 2019

Effect of grazing systems on growth performance, carcass characteristic, meat quality of beef cattle and economic performance of the enterprise

  • Authors: Dayimani, Siyavuya
  • Date: 2019
  • Subjects: Grazing -- Environmental aspects Meat -- Quality
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/17294 , vital:40873
  • Description: Under conditions of adaptive Holistic Management™, we tested whether rotational grazing approaches such as holistic planned grazing (HPG) and four-camp grazing (FCG) influence growth, carcass and meat quality attributes of beef steers compared to continuous, seasonlong (SLG) grazing. Thirty steers (250 ±19.56 kg, 16-17-month-old) were randomly assigned to SLG, HPG and FCG systems (10 steers/ treatment) at a private farm in Cedarville, Eastern Cape Province, South Africa where grazing was managed using an adaptive approach involving inter alia planned grazing charts, seasonal movement of cattle, and supplemental feeding. The steers were slaughtered at 40-41 months for carcass measurements and longissimus et lumborum was sampled for meat quality analyses. All the grazing systems had comparable live weights and average daily gain. All the investigated carcass attributes were also similar across grazing treatments (P > 0.05). Meat from steers on the SLG system had higher (P<0.05) drip loss, protein and fat contents and lower (P <0.05) shear force, moisture and ash contents than the two rotational grazing approaches (HPG and FCG). The HPG had higher (P < 0.05) total running and capital costs compared to SLG and FCG grazing systems. The SLG system had greater (P ≤ 0.05) gross and net income compared to FCG and HPG systems, respectively. Overall, all the grazing systems had comparable growth performance, carcass characteristics and meat quality but rotational grazing systems had lower gross income relative to the SLG grazing system.
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  • Date Issued: 2019

Effect of social capital and information acquisition on the adoption and benefits of conservation agriculture among cassava and maize smallholder farmers in South-West Nigeria

  • Authors: Olawuyi, Seyi Olalekan
  • Date: 2019
  • Subjects: Agricultural conservation , Sustainable agriculture , Farms, Small
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10353/15200 , vital:40200
  • Description: Sustainable economic growth and development in developing economy like Nigeria is achievable through the agricultural sector and sub-sectors which are concentrated in rural areas. Rural areas represent a home to majority (about 75%) of the households practicing farming for family sustenance and/or to earn income from the sales of agricultural products (Oyakhilomen and Zibah, 2014). In addition to the persistent use of traditional farming practices, these rural farming households cultivate crops varieties that are low-yielding on small and scattered farmland holdings (smallholder farmers) (Oyakhilomen and Zibah, 2014). This act depletes the soil organic matter with devastating consequences on production output, income generation as well as the ecosystem. Similarly, non-access to agricultural credit and limited technical knowhow are parts of the challenges that are facing the development of farming activities in subSaharan Africa, including Nigeria (Kassie, Pender, Yesuf, Köhlin, Bluffstone and Mulugeta, 2008). These challenges call for holistic interventions such as conservative agricultural practices; which are sustainable, promote safe environment and ultimately increase production output.
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  • Date Issued: 2019

Effects of herbicide application and phosphorous fertilization on forage production and plant density of abandoned lands planted with pasture legumes

  • Authors: Mashece , Wandile
  • Date: 2019
  • Subjects: Forage plants Grazing
  • Language: English
  • Type: Thesis , Masters , MSc (Pasture Science)
  • Identifier: http://hdl.handle.net/10353/11950 , vital:39121
  • Description: The study was conducted in two communal abandoned grazing lands, namely; Sinqumeni and Kubedlana (referred hereafter as sites) located in the Eastern Cape Province (ECP) where legume pastures have been successfully established for the last ten years. The objectives of the study were to investigate the effects of five different herbicide treatments and four different phosphorus fertilizer application rates on forage production and plant density of abandoned lands. At each site, an area previously planted with legume species and well established with an even stand of legumes were selected. For both experimental sites, experimental design consisted of plot size of 50 m × 50 m for herbicide plot and 25 m ×25 m for phosphorus plot with 5 m×10 m of sub-plot planted with an even stand of pasture legumes arranged in a randomised complete block design (RCBD) in two blocks. The legumes that were planted in these sites were: Lotus corniculatus, White clover, Arrow leaf clover, Yellow serradella, Pitman serradella, Biserrula and Lespedeza cuneata. Prior to planting, the legume seeds were mixed with the appropriate inoculant by hand. Planting was done by over sowing legumes into the natural pastures (grasses) using an Aitchison Mini seeder. In each small plot, data was collected on forage biomass and plant density (species count). Data was analysed using the SAS programme and the significance of differences between means were tested with Fisher’s test for the LSD. On herbicide study, results showed that there were no significant (p > 0.05) difference in forage dry matter (DM) among the herbicide treatments in both years at Kubedlana. Results further showed that all five herbicides did not significantly (p > 0.05) increase the DM yield over control treatment. At Sinqumeni, results displayed no significant (p > 0.05) difference in forage DM among treatments during year 1, whereas in year 2, but all herbicide treatments except Haloxyfop-R methyl & Bendioxide (HBE) yielded greater (p < 0.05) DM yield than the control treatment. Comparing years, forage DM yield only under Bendioxide (BEN) and Paraquat (PAR) treatments had greater DM yield in year 2 than years 1. In Kubedlana, Bendioxide (BEN) and Haloxyfop-R methyl (HAL) treatments showed an IV increase in total density (TD), whereas Glyphosate (GLY) produced the lowest total density (TD) and Paraquat (PAR) and Haloxyfop-R methyl (HAL) resulted in an increased in density of total legumes (TL) relative to control treatment. There was a decline (p < 0.05) in the densities of total plants and forbs from year 1 to year 2. In Sinqumeni, herbicide applications resulted in higher density of total legumes than the control treatment, but results varied among herbicide treatments, greatest density being obtained at Haloxyfop-R methyl & Bendioxide (HBE) and Haloxyfop-R methyl (HAL) treatments. On phosphorus study, result showed a significant (p < 0.05) differences in dry matter (DM) yield among Phosphorus (P) treatments during year 2 of the study at Kubedlana site. All P treatments showed significantly greater dry matter (DM) yield in forage harvested in year 2 compared to year 1. At Sinqumeni, results showed Phosphorus (P) application did not have significance (p > 0.05) effect on forage dry matter (DM) yield on both years. In Kubedlana, there were indications of increased densities of total grasses, legumes and total plants in response to some levels of phosphorus (P) treatments. Treatment Phosphorus at 20 kg ha-1 (P20) yielded the highest total density (TD) and total legumes (TL) numbers and P10 had the lowest total density (TD). Both treatment and year interacted significantly (p < 0.05) to influence the mean density of some plant variables. At Sinqumeni, there were no significant differences due to phosphorus (P) treatments in the densities of total plants, grasses and forbs. Both years interacted significantly (p < 0.05) with treatments to influence the plant density mean, with Lespedeza cuneate (LESP) producing the highest plant density during year 1 and year 2, whereas BSERRL produced the lowest plant density during year 1 and year 2 periods. Therefore, findings of this study suggest that application of both Bendioxide (BEN) & Haloxyfop-R methyl & Bendioxide (HBE) treatments result in a decrease in dry matter (DM) yield, whereas Glyphosate (GLY) herbicide resulted in a decrease in both total density (TD) and total legumes (TL) and Haloxyfop-R methyl (HAL) herbicide application resulted in an increase of total density (TD) and total legumes (TL) V relative to control plot. On phosphorus study, results suggest that at Phosphorus at 40 kg ha-1 (P40) fertilization dry matter (DM) yield will be increased and at both Phosphorus at 20 kg ha1 (P20) and Phosphorus at 40 kg ha-1 (P40) high total density (TD) will be recorded where’s Phosphorus at 20 kg ha-1 (P20) fertilization result in high total legumes (TL).
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  • Date Issued: 2019

Effects of nitrogen and phosphorus rates, leaf age and drying technique on growth and nutritional contents of Moringa oleifera

  • Authors: Sokombela, Asanda
  • Date: 2019
  • Subjects: Moringa
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/12117 , vital:39153
  • Description: In general, smallholder farmers tend to use large quantities of soil nutrients without replenishment with manure, compost and fertiliser in order to replace the soil nutrients that are lost. Considering the low soil fertility status of soils in South Africa, this study was conducted with an aim of developing agronomic protocols for the production of moringa in order to fight malnutrition and produce supplement feed for animals. Moringa contains various nutrients and chemicals, such as, protein, which are sensitive to heat, and there is therefore a need to establish the best drying method which does not affect the nutrient content and quality of moringa. Physiological age is probably the most important factor influencing the mineral composition of plants. The relationship between nutrient concentration and leaf age is not fundamentally altered by crop load, soil type, climate or cultural practices, such that nutrients may be displaced vertically by the level of supply. Leaf age is one of the factors that affect the distribution of nutrients in the leaves of plants. Therefore, studies were conducted to evaluate the response of Moringa oleifera leaf yield and nutritional content to nitrogen and phosphorus rates, leaf age/position, and drying techniques. The experiments were conducted at the University of Fort Hare Alice Campus research farm. The experiment that investigated the effect of N and P rates was carried out in potted plants filled fine silica sand. The seeds were sown on black polythene bags, filled with a mixture of soil, pine bark and goat manure (at 1:2:1 ratio, respectively) at a depth of 2 cm. At 30 cm height, the seedlings were transplanted into 5-liter pots, which were filled with building sand as growing media. The experiment was a 4 x 3 factorial, with four levels of nitrogen (100, 200, 300 and 400 kg/ha) and three levels of phosphorus (40, 80 and 120 kg/ha). The experiment was laid-out as randomised complete block design (RCBD), with 12 treatment combinations replicated four times. All experimental units received the same amount of potassium (731kg/ha) in the form of KCl. Nitrogen treatments which were applied were split in two equal applications, at transplanting stage and 4 weeks later. The phosphorus rates were applied as superphosphate once mixed to the potting media before transplanting. Growth parameters such as plant height, root collar diameters, number of leaves, dry and fresh leaf masses were measured. Powdered dry leaves were also analysed to determine iv metabolite such as crude protein, ash, moisture, fat and fibre constituents (ADF and NDF). Micro and macro mineral nutrients were also determined using atomic absorption spectroscopy technique (AAS). The results showed that growth of moringa significantly increased through the application of fertilizer. The results from the (ANOVA) table showed no interaction between phosphorus and nitrogen on growth parameters such as number of leaves, stem width and plant height of moringa in this study. Nitrogen levels, as treatments, have significantly affected the growth of the plant. However, phosphorus, as a treatment, showed no significant difference on growth parameteres of Moringa. It was evident that trees that received the highest nitrogen rate (400 kg/ha) resulted in thickest stem girth, tallest trees and the highest number of leaves. The overall results revealed that moringa leaf powder contained appreciable amount nutrients. Crude protein was notably high (38.23%) in the trees that received the highest phosphorus and nitrogen combination treatment (400 kg/ha N x 120 kg/ha P treatment combination. The highest ash content of (14.17%) and (14.21%) were recorded from the trees that received treatment combination of 200 kg/ha N x 80 kg/ha P and 100 kg/ha N x 120 kg/ha P, and significantly differed from the rest of the other treatment combinations. The fat content steadily increased with an increase in nitrogen rate. Increase in P level resulted in a decrease in fat content. The overall findings confirm that combinations of the higher levels of N and P result in a decrease in fat content. The variation in the metabolite nutrients and mineral nutrient values may be due to differences in age of the leaves or positions and possibly due to different stages of maturity of leaves. The second experiment was conducted in the field at the research farm. The aim was to evaluate the effect of leaf age/position on nutrient distribution of moringa. The seeds were sown in black polythene bags at a depth of 2 cm. The bags were filled with a mixture of 1 part of soil, 2 parts of pine bark: and 1 part of manure. The seedlings were transplanted into the field when they reached the height of 30cm. Plants were laid-out as a CRD design with 5 replications. Three leaf positions, upper, middle and basal leaves, were used as treatments to determine the nutrient variation within a parent plant. Leaves of each position were harvested separately, washed with tap water and air-dried in shade condition. The dried leaves were analysed for metabolite and mineral content. The Association of official agricultural chemists (AOAC) methods were used to determine protein, fat, fibre, and ash. Atomic absorption spectrometry (AAS) technique was used to analyse minerals v such as iron, zinc, copper, manganese and macro-minerals such as calcium, magnesium, potassium, sodium and phosphorus. The study showed that ash, fat, NDF and ADF contents were significantly higher in the basal leaves as compared to that in the middle and upper leaves. However, moisture and crude protein contents were significantly higher in the upper leaves compared to both in the middle and basal leaves. The basal leaves accumulated significantly higher Ca, Mg, K, Na and Mn contents. The concentrations of P, Zn, Cu and Fe were, on the other hand, significantly higher in the younger leaves compared to that in the middle and basal leaves. It can be concluded that the upper (younger) leaves contain enough nutrition to satisfy the dietary requirements. In addition, these leaves have low levels of oxalate, cyanide and nitrate, which can cause health problems. To determine the effect of drying method on nutrition content of moringa leaves, three drying methods (shade-, sun- and oven-drying methods) were applied as treatments. Moringa plants were grown at the Research Farm of the University of Fort Hare, Alice campus. The leaves were harvested, thoroughly mixed, washed with tap water and put into 15 brown paper bags. The 15 samples (paper bags) were distributed to the three drying treatments (each treatment replicated 5 times). The dried samples were analysed for metabolites and mineral content as per AOAC and AAS methods, respectively. The study showed that shade-drying method retained higher metabolites. Thus, this study recommends the shade-drying method in preserving moringa leaves.
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  • Date Issued: 2019

Effects of pre-slaughter stress, sex and breed on blood stress indicators, heat shock proteins, glycolytic potential and lamb quality

  • Authors: Stempa, Thuthuzelwa
  • Date: 2019
  • Subjects: Animal welfare , Meat--Quality
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10353/15376 , vital:40402
  • Description: The main objective of this study was to determine the effects of pre-slaughter stress (transportation distance and lairage duration), sex and breed on blood stress indicators, heat shock proteins, post-mortem muscle metabolites (glycogen, glucose, glucose-6-phosphate and lactate), glycolytic potential and meat quality attributes from lambs slaughtered at a commercial abattoir. The study was conducted in a high-throughput commercial abattoir in the Buffalo City local municipality of the Eastern Cape Province, South Africa. A total of a hundred eight-month old Dorper and Merino lambs, both male and female, were used in the study. Blood samples for the analysis of glucose and lactate levels were collected using 10.0 mL disposable Becton Dickinson vacutainer tubes treated with fluoride oxalate (grey top) whereas those for determination of cortisol and heat shock protein 70 (HSPA1A) levels were collected using plasma separating vacutainer tubes (SSTTMII, gold top), and those for analysis of creatine kinase and lactate dehydrogenase were collected using 10.0 ml vacutainer tubes treated with Ethylenediaminetetraacetic acid (EDTA). Meat samples (~50 g) for the measurement of post-mortem energy metabolites (glycogen, lactate glucose-6-phosphate and glucose content) were collected from the Muscularis longimissius thoracis et lumborum (LTL) of each carcass ~30 minutes after slaughter and immediately frozen in liquid nitrogen (-196 oC) to prevent further glycolysis. Cold carcass weight (CCW), warm carcass weight (WCW) and carcass fatness (CF) was measured. Meat pH and temperature were measured at iii 45 minutes (initial pH), 6 hours and 24 hours ultimate pH (pHu) post-mortem. Meat colour coordinates [lightness (L*), redness (a*), yellowness (b*), hue angle (H*), chroma (C*)] were also measured 24 hours after slaughter. Furthermore, thawing loss (TL%), cooking loss (CL%) and warner braztler shear force (WBSF) was measured in the LTL 7 days post slaughter. Breed had a significant effect on plasma HSPA1A, plasma lactate, WCW, CCW, L*, muscle glycogen and WBSF. Sex had a significant effect on plasma HSPA1A and pHu. Pearson‘s correlations showed that meat muscle glycogen was positively correlated to glycolytic potential (P<0.001; r=0.63) and initial pH (P<0.05, r=0.20). Muscle lactate was positively correlated to muscle glucose (P<0.01, r=0.30) and glycolytic potential (P<0.001, r=0.79). A positive correlation was shown between muscle glucose and glycolytic potential (P<0.05, r=0.23). The level of LDH was affected by the distance travelled by lambs prior to slaughter. Lairage duration did not affect the levels of CK and LDH. Principal Component Analysis showed a relationship between distance travelled and CK and LDH; and that CK and LDH also influenced the quality of meat from lambs. With respect to sex and breed, the results indicate that female and Dorper were more stressed than male and Merino respectively. Muscle glycolytic potential and post-mortem metabolites have an impact on the quality of meat produced and the Merino had higher muscle glycogen levels at slaughter; hence they produced better meat quality compared to the Dorper. Moreover, no associations were seen between pHu and blood stress indicators. These results indicate that blood stress indicators at exsanguination cannot be used as useful indicators of dark cutting condition in lamb. A relationship between pHu, muscle glycogen and glycolytic potential was established and thus meat pHu can be used as a reliable indicator of tenderness in lamb.
  • Full Text:
  • Date Issued: 2019

Electrical, photo-thermal and mechanical degradation analysis of degraded single junction amorphous silicon solar modules

  • Authors: Osayemwenre, Gilbert Omorodion
  • Date: 2019
  • Subjects: Solar cells Amorphous semiconductors Silicon
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10353/15211 , vital:40204
  • Description: In this present era of sustainable energy development, photovoltaic modules which are based on amorphous silicon cells have immeasurable prospects of contributing meaningfully to the energy demand of the world at large. The global consciousness of environmental safety issues has birthed the rapid demand for the photovoltaic system. However, the production increase is mainly in bulk-type crystalline (c-Si) solar cells. Thus, to meet the high demand of the market, single junction amorphous silicon (a-Si:H) solar cells production must be encouraged through active research in that regard. This could also help to improve its efficiency and reliability. There has recently been a sharp decrease in the production cost of the bulk Si solar cell, but the a-Si:H solar cell still remains the most economically viable in comparison to the other PV technologies. Companies such as Sharp are currently developing large-scale a-Si:H solar modules that can produce an efficiency of 10.5% after the long-term degradation process. To date, a-Si:H is believed to be one of the most promising thin-film PV technologies (Saito et al., 1993; Hamakawa et al., 1994). The cost of a solar PV manufacturing fell by 6% in 2014 (Santa, 2014), this is in accordance with the 2008 cost production forecast; thus, the cost record stands at 0.20 per watt, as reported by the NPD Solar publisher. Amorphous silicon (a-Si) solar modules generate more kilowatt-hour (kWh) of electricity per kilowatt (kW) than crystalline silicon or other technologies of the same capacity of installation. Furthermore, a-Si:H modules have more functional hours per day. Single junction amorphous silicon (a-Si:H) modules can function beyond the peak sun hours, and they also have a better performance on a cloudy day. vii In other words, a 1kW PV system of a-Si:H is expected to generate more electricity per year in comparison to 1kW PV from other technologies, hence there is a low energy payback time. In this study, commercially available single junction amorphous silicon modules were bought from a local market and they were immediately deployed outdoors. The initial reading of the modules, which served as baseline reading, showed an average of 25% decrease in the modules performance, therefore, there is a need for a long term monitoring process to obtain the best and worst performing modules. Measuring the performance parameters of these PV modules under real sun light (IV) provides a better degradation assessment. This conventional assessment cannot provide an in-depth insight responsible for the variation and degradation of the performance parameters. More obscured parameters like recombination current and ideality factor were obtained from the dark IV measurements. However, this is still superficial in a way. The intrinsic parameters were obtained from scanning probe microscopy (SPM) and CV measurements. The study focuses on the degradation analysis of a-Si:H due to an increase in defect density. A rise in the defect concentration is a huge problem because it causes long-term solar cell degradation, which increases the recombination current and decreases the conversion efficiency. Furthermore, it decreases the photo-generating current and reduces the effective efficiency of the solar device. In other words, the electrical output decreases. This research investigates the reduction in a-Si:H modules’ maximum power, and correlates these with a hot spot formation. A PVPM IV tracer was used for the outdoor characterisation of the module’s temperature profile, while the IR camera was used to analyse the hot spot centre. A four probe IV/CV from NMU was used for the indoor assessment of smaller samples cleaved from both the affected and non-affected regions to characterise the electrical variations across the module viii samples. To be precise, in this study, a naturally degraded single junction amorphous silicon module was delaminated and its mechanical properties were analysed and correlated with the contact potential from a Kelvin probe force microscopy (KPFM).
  • Full Text:
  • Date Issued: 2019

Evaluating Livestock Development Programmes through the Production Risk Interface: Case of the Kaonafatso ya Dikgomo (KyD) Scheme in South Africa

  • Authors: Ngarava, Saul
  • Date: 2019
  • Subjects: Livestock projects
  • Language: English
  • Type: Thesis , Doctoral , Degree
  • Identifier: http://hdl.handle.net/10353/15730 , vital:40513
  • Description: Livestock is significant in the livelihoods of the rural poor, providing a plethora of benefits. Livestock Development Programmes (LDPs) can transform smallholder farmers’ production for increased production and poverty reduction. The Kaonafatso ya Dikgomo (KyD) Scheme is a LDP implemented in South Africa with the aim of assisting smallholder farmers to attain economic and sustainable beef production. The literature shows that most evaluations of LDPs have been quantitative based on measurable and quantifiable metrics. Furthermore, various socio-economic and institutional factors have a bearing on the decision to participate in LDPs and eventually adopting the practices. Impact assessments of LDPs have been devoid of risk consideration as well as ascertaining how risk introduced by participating in LDPs has impacted productivity. The overall objective of the study was therefore to evaluate LDPs, focussing on benefits, participation and risk. The specific objectives of the study entailed developing a conceptual tool for measuring the qualitative and secondary benefits. Secondly, it was to determine factors influencing participation decisions in the KyD Scheme. Thirdly, the study sought to measure and compare calving rate and off-take rate risk between KyD Scheme participants and non-participants. Lastly, the study highlighted the variability (risk) introduced by participating in a LDP and its impact on production. The study utilised a cross-sectional survey of KyD Scheme participants and nonparticipants in KwaZulu-Natal, Limpopo and Eastern Cape Provinces of South Africa. Non-probability convenience sampling method was utilised in selecting a sample of 164 KyD Scheme participants and 81 non-participants. A semi-structured questionnaire was the data collection tool utilised. A conceptual “Livelihood Effect Benefit Index”; Probit, Tobit and Ordered Probit models; Just and Pope Production function; Propensity Score Matching; and Monte Carlo Simulations were utilised to analyse data. Statistical Package for Social Scientists version 24, STATA 13 and @Risk Decision Tool were the analytical packages utilised in analysing the data. The study found that the Scheme provided low qualitative benefits, mainly through social capital. Furthermore, socio-economic and institutional factors have significant impact on the decision to participate in the Scheme, extent of participation and decision to continue practicing Scheme experiences. In comparing the two groups of Scheme and Scheme non-participants, calving and off-take risk for KyD Scheme participants was lower than that of Scheme non-participants. In comparing individuals with similar characteristics between the two groups, Scheme participants reduced calving risk whilst increasing the off-take risk. Page | vi The study concluded that the Scheme exhibited low qualitative benefits. Furthermore, the decisions to participate and the extent of participation in the KyD Scheme were influenced by various socio-economic and institutional factors, which were however more favourable to resource endowed smallholder farmers. In addition, the Scheme had significant impact on production risk. The risk reducing determinants appeared to also favour more resource endowed smallholder farmers who had more farming experience. The study’s recommendations were subdivided into short term, medium term and long term. The short term recommendations included targeting farmers within a distance of between 30km and 90km from a formal market, promoting dipping services-based training and extension, and providing information and training concerning calving i.e. animal health, husbandry and breed selection for herd maximization. Participation in the Scheme and the extent of participation can be improved through enhancing awareness of the Scheme at various points where stock feed are available to farmers. Furthermore, enhanced cooperation with extension workers provides a conduit in improving awareness of the Scheme and enhancing participation. The medium term recommendations pertained to initiatives such as promoting other livelihood options to enhance benefits of the programme, and promoting social capital enhancing initiatives such as mentoring and providing social capital objectives that can be integrated into the overall livestock sector strategy. The long-term recommendations include initiatives such as subsidizing increase in herd size to between 50 and 120 cattle, maintaining a monthly frequency of farmer-extension contact of between 2 and 5 times per month, as well as incorporating calving and off-take risk in policy formulation, implementation and evaluation
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  • Date Issued: 2019

Evaluation of groundwater potential based on hybrid approach of geology, geophysics, and geoinformatics: Case study of Buffalo Catchment area, Eastern Cape, South Africa

  • Authors: Owolabi,Solomon T
  • Date: 2019
  • Subjects: Hydrogeology Geology
  • Language: English
  • Type: Thesis , Doctoral , PhD (Geology)
  • Identifier: http://hdl.handle.net/10353/12238 , vital:39218
  • Description: This study focuses on the feasibility of exploring potential groundwater zones through assessment of catchment geo-hydrodynamic processes, using hydro-statistic principles and geographic information system-based approaches. The research work integrated analysis of hydrologic variables, geologic structures, and geomorpho-tectonic processes that provide information on spatial variability of hydrologic units in a watershed. The study is aimed at improving conceptual knowledge and presenting the technical feasibility of exploring potential groundwater zones through geo-hydrodynamic perspectives in hydrogeologically challenged environments. The study adopted a case design approach at the Buffalo hydrologic basin headwater in Eastern Cape, South Africa. The methods used in this study include: field mapping of geologic units and structures, digital processing of aeromagnetic map, cross-section profiling of borehole logs, auto-extraction of lineament, streamflow variability and recession assessment, geomorpho-tectonic analysis of surficial drainage pattern, vertical electrical sounding for imaging shallow subsurface layers, and geospatial integration of thematic maps of groundwater multi-influencing factors. The results indicate that the hydrogeological settings of Buffalo watershed comprised of good, moderate, fair, poor and very poor groundwater potential zones which cover 187 km2 , 338 km2 , 406 km2 , 185 km2 , and 121 km2 respectively. The results report that the groundwater system of Buffalo watershed is mainly hosted by the well-drained fractured dolerite and the shallow unconfined sandstone aquifer. The aquifer is bounded by two parallel impermeable valley walls in the north and south. Also, the Buffalo drainage system constitutes a variable head boundary as a groundwater discharge zone. The groundwater discharge which mostly occurs at the Tshoxa upper course, Mgqakwebe, Quencwe, Yellowwoods upper course and the Buffalo River center influence the status of the Buffalo River as a perennial river system. vi The groundwater recharge occurs through the networks of surficial lineaments and fractures concentrated on the sandstone lithosome, mostly in the northern half of the watershed. The surficial tectonic features trend in a WNW-ESE and E-W direction. The groundwater flow system is controlled by the subsurface lineaments which are oriented in west-northwest – eastsoutheast direction. Most of the groundwater recharge is driven by rain which is extreme at the north. The hydro-climatic pattern of the region influences the dendritic drainage system of Buffalo watershed. The geologic characterization and geomorpho-tectonic analysis indicate that the geologic settings are made up of upward-fining lithologic material and siliciclastic materials that were deposited as fill in paleochannels by braided and meandering fluvial systems. The variability in dissection property and the fluvial system indicates that Buffalo hydrologic and geomorphic systems are heterogeneous and complex. The possible impact of these variabilities aligns with the report of geoelectric sections which revealed the heterogeneity of the aquifer intrinsic properties and variability in groundwater yield. The electric resistivity tomography revealed the existence of a fault system and variation in the thickness of the aquifer. Hydrologic characterization indicates the vulnerability status of the rivers within the watershed. In particular, the Ngqokweni River is vulnerable to diminution while Quencwe River has the potential for a flash flood. Buffalo station is an important surface water capture zone. Delineation of groundwater potential zone should incorporate geologic, hydrologic, geophysical, geomorphotectonic, and environmental perspectives due to the inherent relationship among influencing factors. The study therefore identifies groundwater capture zones which can be further explored for groundwater development and to mitigate the stake of water shortage. The study therefore recommends the approach here to the department of water affairs for adoption to map the zones of groundwater potential at a regional scale. The study also provides resourceful information on vii groundwater recharge zones and therefore recommends that the environment and water stakeholders work together to protect the recharge zones from groundwater contamination due to land use
  • Full Text:
  • Date Issued: 2019

Evaluation of pre-treatment methods on production of bioethanol from bagasse and sugarcane trash

  • Authors: Dodo, Charlie Marembo
  • Date: 2019
  • Subjects: Lignocellulose
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10353/15387 , vital:40403
  • Description: A variety of methods have been researched on for bioethanol preparation from different feedstocks. Amongst the available feedstock, one such feedstock is the sugarcane plant. In most of the research on bioethanol preparation with sugarcane the sugary juice has been widely used, with the bagasse and trash having been discarded as waste. The “waste” bagasse and trash are usually removed and thrown away or burnt during harvesting or in sugar mills to supplement energy requirements. This research on lignocellulosic bagasse and trash was done so as not to discard them but to rather find ways in which to use this biomass constructively. Alternatives to burning that can potentially add value to this biomass need to be researched on by evaluating their hydrolysis content. The different lignocellulose pretreatment methods of concentrated and dilute acid pretreatment, with subsequent enzyme hydrolysis as well as alkali and oxidative alkali pretreatment with enzyme hydrolysis were experimented on the bagasse and trash for hydrolysis efficiency and effectiveness. There are two types of acid hydrolysis which were investigated on which are concentrated and dilute sulphuric acid pretreatments. Use of concentrated sulphuric acid yielded the highest amounts of reducing sugars but also resulted in the highest amounts of downstream process inhibitors formation. This resulted in the need for neutralisation steps which in turn increase the overall costs of using this method to obtain reducing sugars. It has however the advantage of occurring at a faster rate, within minutes or hours, than using biological enzymes which took days, up to 72 hours to obtain the highest reducing sugar amounts. Dilute sulphuric acid pretreatment offered the advantage of using fewer chemicals which are therefore less severe on equipment and result in fewer fermentation inhibitors being formed. Dilute sulphuric acid hydrolysis also takes a relatively shorter period than biological methods of pretreatment. A challenge of fermentation inhibitors formed during acid hydrolysis was countered by using the methods of overliming (calcium hydroxide) and comparing it to neutralization with sodium hydroxide. Alkali pretreatment with sodium hydroxide was researched on by applying different pretreatment concentrations during experiments on the lignocellulosic biomass. There was an increase in the available quantities of cellulose with a significant reduction in lignin with pretreatment. Alkali pretreatment proved effective in exposing the cellulose which made v more cellulose surface area available to cellulase enzymes for enzyme hydrolysis. The highest yield of reducing sugars was obtained from hydrolysates pretreated with 0.25 M sodium hydroxide for 60 min and a period of 72 h of enzyme hydrolysis. In general the longer the pretreatment time the more reducing sugars were produced from the enzyme hydrolysis. Alkali peroxide pretreatment also resulted in significant reductions in lignin quantities of lignocellulose material. In this method sodium hydroxide in combination with hydrogen peroxide were used in pretreating the biomass. Hydrolysates with even fewer fermentation inhibitors were produced as a result. The highest percentage concentration of cellulose of 63% (g/g) was achieved after pretreatment of bagasse with 5% alkali hydrogen peroxide and trash with 0,25M sodium hydroxide pretreatment. Pretreatment of biomass using alkali with subsequent enzymatic hydrolysis gave the highest yields of fermentable sugars of 38% (g/g) using 7% (v/v) alkali peroxide pre-treated trash than 36% (g/g) for 5% (v/v) with the least inhibitors. Reducing sugar yields of 25% (g/g) and 22% (g/g) were obtained after pretreatment with concentrated and dilute acid respectively. Neutralization of the acid hydrolysates was necessary to reduce inhibitors formed with neutralisation by sodium hydroxide resulting in low dilutions and loss of fermentable sugars as unlike in the case of overliming. Subsequent steps of fermenting the reducing sugars resulting from pretreatment into bioethanol were based on using the yeast Saccharomyces cerevisae. Pretreatment hydrolysates from alkali peroxide experiments produced higher bioethanol yields of 13.7 (g/l) after enzyme hydrolysates versus 6.9 (g/l) bioethanol from dilute acid hydrolyzates. A comparison of the effects of time showed there was more bioethanol yield of 13.7 (g/l) after 72 h of fermentation with the yeast versus 7.0 (g/l) bioethanol after pretreatment for 24 h. The only drawback is the longer fermentation period which thus reduces the process and so reduces the value of the increase in yield
  • Full Text:
  • Date Issued: 2019

Evaluation of some Eastern beach bacteria for high activity laccase production

  • Authors: Ntlatywa, Nonkolisi
  • Date: 2019
  • Subjects: Laccase
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/${Handle} , vital:40025
  • Description: Laccases are multi-copper oxidases endowed with huge applicability and versatility. They are found in nature, fungi, insects, archaea and bacteria; however, there is a dearth of information regarding bacterial laccases. Thus, the search for novel bacterial laccases becomes crucial. Therefore, the broad aim of the study was the assessment of some bacteria on marine water isolated from Eastern beach for the production of high activity laccases. In this study, marine water samples obtained from the Eastern beach in East London were investigated for bacterial laccase-producing isolates. The samples were analysed using different microbiological media and varied substrates via qualitative methods. The isolates were tested for laccase activity using ABTS (2, 2’- azinobis 3-ethyl-benzothiazoline-6-sulphonate), as a substrate. The present study also dealt with the optimization of culture conditions for laccase production and characterization of laccase. A total of forty-eight (48) bacterial isolates were obtained, which were identified based on their morphological and cultural characteristics. Many of the isolates (42) were categorized as Gram positive and a few (6) as Gram negative upon subjecting to microscopic examination. Result showed that on average, laccase activity ranged from 5.33 – 6.5 U/L as demonstrated by three bacterial isolates (Bacillus sp. NFN1, Bacillus sp. NLN and Escherichia coli LO). Laccase production was highly enhanced by the supplementation with vanillic acid by Bacillus sp. strain NLN with yield of 15.83 ± 0.7 U/L, Bacillus sp. strain NFN1, 12.72 ± 0.21 U/L. However, Escherichia coli LO demonstrated enhanced laccase production with guaiacol (12.84 ± 1.12 U/L) followed by ferrulic acid (12.8 ± 0.36 U/L). While optimization results revealed that the laccase yield was enhanced under the following conditions: 72 h of incubation, pH 5, 0.5mg/L lactose as a carbon source, 1. 5 mg/L yeast extract as a nitrogen source as well as in the presence of corn stover and mandarin peels as lignocellulosic substrates depending on the bacteria.The time course and stability of laccase against temperature, pH, metal ions and organic solvents were investigated using previously described methods. In the findings obtained for the time course, the laccase activity ranged from 22.2- 23.98 U/L. In general, the optimum parameters for the optimum laccase activities depended on the bacterial isolates and the time of incubation and included 80 °C and 70 °C, pH 3 and 9 while, the thermal stability was over 100%. Overall, NaCl, ZnSO4, NiCl and 20% acetone demonstrated positive effect on the residual activity of the laccases of all the bacterial isolates (Bacillus sp. NFN1, Bacillus v sp. NLN and Escherichia coli LO). In conclusion the findings of the study, suggest that marine water of the Eastern beach is a rich source for laccase producing bacteria with potential of high activity.
  • Full Text:
  • Date Issued: 2019

Extraction, isolation and characterization of oleanolic acid and its analogues from Syzygium aromaticum (cloves) and evaluation of their biological activities

  • Authors: khwaza, Vuyolwethu
  • Date: 2019
  • Subjects: Antibacterial agents
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/19076 , vital:39882
  • Description: Pathogenic microorganisms have serious impact on people's lives. Every year, millions of people around the world die of bacterial infections. Resistance to common antibacterial drugs has proven to be a challenging problem in control of bacterial infections. In an attempt to develop an effective and affordable treatment for bacterial infections, oleanolic acid isolated from syzygium aromaticum conjugates incorporating other pharmaceutical scaffolds such as chloroquine derivatives, curcumin, and ergocalciferol etc have been developed. Based on the previous successes of testing combination of antimicrobial drugs and pharmaceutical drugs which appeared to be the promising strategy to overcome treatment failure; a series of hybrid compounds containing oleanolic acid and other pharmaceutical scaffolds were synthesized. 4- Aminoquinoline derivatives were first hybridized with selected organic compounds to form a class of hybrid compounds containing either amide bond or ester bond as a linker between the precursor molecules. Analogues/hybrid compounds can overcome the disadvantages of combination therapy such as drug-drug interaction. The structural effects of this type of conjugation of oleanolic acid and other pharmaceutical scaffolds were characterised by FTIR, Mass Spec and NMR spectroscopy. These compounds were studied along with the monosubstituted oleanolic acid analogues and the organic components in order to compare the effects of the substitution on their biological response.‖ All the synthesized analogues were tested against 11 bacterial strains on both Gram-positive and Gram-negative bacteria. The synthesized compounds showed selectivity and higher activity against Enterococcus faecalis (EF), Klebsiella oxytoca (KO), Escherischia coli (EC), Staphylococcus aureous (SA), Proteus vulgaris (PV) and Bacillus subtilis (BS) with MIC values; ranging between of 1.25 mg/mL to 0.072 mg/mL
  • Full Text:
  • Date Issued: 2019

Genetic characteristics of Human Immunodeficiency Virus-1, and deter-minants of late presentation for care and Diabetes mellitus amongst newly diagnosed Human Immunodeficiency Virus positive patients in the Eastern Cape, South Africa.

  • Authors: Sogbanmu, Olufunso Oladipo
  • Date: 2019
  • Subjects: HIV infections
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/${Handle} , vital:40495
  • Description: Phylogenies may help to characterize transmission pairs, enhance contact tracing and outbreak investigations, track the origin and spread of epidemics over place and time, and to identify patterns of onward Human Immunodeficiency-Virus (HIV) transmission among risk groups. If the pattern and evolution of HIV drug resistance can be mapped, this may influence the development of guidelines in the clinical management of HIV especially with issues relating to prevalence of primary drug resistance and its impact on outcomes of present antiretroviral treatment (ART) regimen in use and the ability to trace and track the development of drug resistant strains. The roll-out of the test and treat Programme for newly diagnosed HIV infected pa-tient, seeks to identify HIV infected individuals early and to prevent morbidity and mortality associated with the late presentation for HIV care. The determination of the magnitude of ‘late presentation’ and or ‘presentation with advanced HIV disease’ can be used in very diverse settings and for many purposes. It provides a unified way to define the problem, thereby targeting appropriate interventions to prevent the detrimental outcomes associated with late presentation to care. The subtle relationship between HIV and diabetes mellitus (DM) may also help in formulating better preventive programs to aid the control of non-communicable diseases such as DM. This cross-sectional study includes a purposive selection of 335 HIV positive patients attending the voluntary counselling and Testing (VCT) and HIV Counselling and Testing (HCT) centres and outpatient departments at Cecilia Makiwane Hospital and the HCT sites at the Buffalo District municipality community health centres, Eastern Cape Province, South Africa. Late or delayed presentation of HIV infection was defined as CD4 cell count beneath 350 cells/μL and/or patients presenting with an AIDS-defining event at the first follow-up regardless of the CD4 cell count. Chapter 1 provides the general introduction had an overview of the introduction to the study, the statement of the research problem, hypothesis, the aim and the objectives. xx Chapter 2 looked in-depth at the HIV, case definition, the latest epidemiology of HIV, the HIV genome, the life cycle of HIV, its diagnosis, the classes of antiretroviral drugs, development of drug resistance. Chapter 3 highlighted the prevalence of Transmitted Drug Resistance (TDR) with focus on the protease gene. RNA was extracted from blood samples of 72 newly diagnosed HIV-1 patients attending some HIV testing and counselling clinics from August 2016 to July 2017. Protease fragments were amplified with specific primers by RT-PCR followed by nested PCR. The amplified products were sequenced using the ABI 360 sequencer, edited with Geneious version 9.1.5 and translated into amino acid with BioEdit software. Drug related resistance mutation (DRMs) analysis was performed on all the protease sequences in accordance with the 2009 WHO list of surveillance drug resistance mutations by submitting the edited sequences to Stanford HIV drug interpretation programme and the international AIDS society-USA guidelines for query of drug resistance associated mutations while phylogenetic analysis was performed using MEGA 6 to allocate all viral sequences into subtypes. In the study, a total of 52/72 (71.1%) reliable HIV-1 protease sequences were obtained in which subtyping and drug resistance mutations were performed. Two (3.8%) major Protease resistance associated mutation (V82A/L and L90M) were observed while another polymorphism like L10F, T74S, Q58E, L10I/V and M46V were also identified. Phylogenetic analyses delineated all the sequences as HIV-1 subtype C. Chapter 4 describes the prevalence and the determinants of late presentation amongst newly diagnosed HIV positive individuals in the Eastern Cape. It indicates the extent of the prevalence of patients presenting to care and at what HIV stage they were assessing health care services since the inception of the ‘test and treat’ strategy. It is a cross-sectional study where a total of 335 newly diagnosed patients were recruited consecutively be-tween August 2016 and July 2017. Late presenter for HIV care was defined in accordance with the European Late Presenter Consensus working group as a patient who reports for care when the CD4 count is below 350 cells/μL and/or when there is an established Aids- xxi defining clinical condition, irrespective of CD4 count. Adjusted and unadjusted logistic regression analysis was used to examine the determinants of late HIV diagnosis. The study showed that 60% of patients were late presenters, with 35% presenting with advanced disease. The major determinants identified were being male and low level of education. This led to recommendations directed at ensuring programmes that targets men in identifying their HIV status and assess care at early stage to prevents the morbidity and mortality associated with delayed presentation. Also, it was recommended that effort should be made to improve access to education and also include HIV related topics into the educational curriculum. Chapter 5 aimed to describe the prevalence and determinants of DM amongst newly diagnosed HIV positive individuals. This is a cross-sectional study which recruited 335 patients between August 2016 and September 2017. Definition for diabetes mellitus was made based on the SEDMSA 2015 guideline of HBA1C of above 6.5%. Adjusted and unadjusted logistic regression analysis was used to examine the determinants of abnormal glycated haemoglobin. Findings showed the prevalence of DM at about 6% amongst newly diagnosed HIV positive individuals. This is similar to findings in other study within the country, but a bit lower than what was obtained in the developed countries. The role of older age (above 40 years) as predisposing factor to development of diabetes in newly diagnosed HIV positive individual was well noted and taken. This ensures that screening for DM should be targeted at elderly HIV positive individuals. The grey area of the appropriate mode of diagnostic test to use to diagnose HIV is still debatable, however, a combination of HBA1c and fasting blood sugar (FBS) may improve the diagnosis of DM in this population group. In chapter 6, the general conclusions, recommendations and future perspectives of the study are reflected.
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  • Date Issued: 2019

Genetic detection of some tick-borne bacterial and protozoan pathogens in ticks collected in Raymond Mhlaba local municipality, Eastern Cape Province, South Africa

  • Authors: Nqoro, Ayabulela
  • Date: 2019
  • Subjects: Tick-borne diseases Ticks
  • Language: English
  • Type: Thesis , Masters , MSc
  • Identifier: http://hdl.handle.net/10353/17084 , vital:40846
  • Description: Ticks and tick-borne diseases are becoming a major life threatening concern to wildlife, domesticated animals and human health. Besides causing skin damage, ticks infestations have become a growing burden in food security, economic losses and transmitting multides of pathogens. Little data and knowledge is available regarding the occurrence of etiologic agents of tick-borne diseases in the Eastern Cape of South Africa, hence the study was conducted and aimed at screening for genetic material of Anaplasma, Rickettisia, Ehrlichia, Borrelia, Babesia and Theileria species in ticks collected in Raymond Mhlaba District at Eastern Cape, South Africa. Ticks were collected from domesticated animals in Raymond Mhlaba Municipality, and were morphologically identified and processed for DNA extraction. Ticks were chopped into bits and DNA was extracted from the samples with commercial DNA extraction kit. The extracted DNA samples was used to molecularly identify the tick as well as assess the presence of tickborne pathogens belonging to Rickettsia, Babesia, Borrelia, Anaplasma and Erhlichia, and Theileria spp. by PCR using specific primer pairs published in literature. Positive amplicons were sequenced in a commercial sequencing facility. The obtained chromatograms were edited with Geneious bioinformatics software and were subjected to BLASTn and phylogenetic analyses using MEGA7 version for evolutionary relationships with curated reference sequences in GenBank. Nine hundred and sixty two tick samples were collected from domestic animals. Collected tick samples belonged to three genera, which were the Amblyomma, Rhipicephalus and Haemophalis in decreasing order of their abundance. Screening of tick DNA samples by PCR did not show presence of Babesia, Borrelia, Anaplasma and Erhlichia. 13 Positive PCR products were observed for Rickettsia and Theileria spp.. The positive amplicons were purified, sequenced and analysed for speciation of Theileria and Rickettsia. The presence of Rickettsia was detected in 60/994 (6%) from the three genera of ticks. Phylogenetic analyses shows that the sequences obtained are phylogenetically related to members of Spotted fever group Rickettsiae. Genetic material of Theileria spp. was detected from 10/994 ticks with an overall infection of 1% obtained in Rhipicephalus genera. Analyses shows that the sequences obtained are phylogenetically related to T. orientalis complex. The finding from this study therefore expands the knowledge on recent emergence of Theileria and Rickettsia spp. in Raymond Mhlaba Municipality in Eastern Cape, South Africa
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  • Date Issued: 2019

Genetic diversity, resistance profile of hiv and risk assessment of mother-to-child transmission in pregnant women on antiretroviral therapy in the Eastern Cape, South Africa

  • Authors: Adeniyi, Oladele Vincent
  • Date: 2019
  • Subjects: Antiretroviral agents , HIV infections -- Treatment -- South Africa
  • Language: English
  • Type: Thesis , Doctoral , PhD
  • Identifier: http://hdl.handle.net/10353/15120 , vital:40183
  • Description: Despite the initiation of life-long ART in HIV-infected pregnant women, the rate and determinants of infant HIV transmission are not known, especially in the poor resource settings of the Eastern Cape, South Africa. Maternal anti-retroviral therapy (ART) is crucial for elimination of mother-to-child transmission (MTCT) of HIV. However, the inevitable risks of emergence of HIV drug resistance poses significant threat to achieving this goal of HIV-free generation and keeping mothers alive. Also, it is unclear if women with high viral load at delivery have acquired clinically relevant mutations, which could confer resistance to the ART, thus, further increasing the risks of motherto-child transmission of HIV-drug resistance strains. In addition to the gaps identified in the prevention of mother-to-child transmission (PMTCT) context, the understanding of regional epidemics is crucial to the broader epidemiological profiling of HIV infections in the country. Despite the rapid influx of foreign nationals to South African and Eastern Cape Province, there has not been any molecular epidemiological studies profiling the HIV diversity in the Eastern Cape.
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  • Date Issued: 2019
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