Interactions of arbuscular mycorrhizal fungi and spore-associated bacteria
- Authors: Ridsdale, Carmen Jane
- Date: 2013
- Subjects: Mycorrhizal fungi , Host plants , Bacteria
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4159 , http://hdl.handle.net/10962/d1018269
- Description: Arbuscular mycorrhizal (AM) fungi are naturally occurring in roots of terrestrial plants. AM fungi are capable of benefiting the host plant through various mechanisms such as enhanced nutrient supply, alleviation of environmental stress and inhibition of plant fungal pathogens. AM fungal spore-associated bacteria have been previously isolated and shown to have plant growthpromoting (PGP) abilities by several authors. Some bacterial isolates are able to promote AM fungal colonisation of host plants and are known to be mycorrhizal helper bacteria (MHB). This study focused on the isolation of AM fungal spore-associated bacteria, characterization of the isolates according to plant growth promoting abilities and evaluation of their potential to enhance plant growth and mycorrhizal colonisation. AM fungi were extracted from soils sampled from natural indigenous forest sources, raspberry (Rubus idaeus cv. Heritage) and strawberry (Fragaria ananassa) farms in South Africa and from a raspberry (Rubus idaeus cv. Autumn Bliss) plantation in Argentina. A total of 52 sporeassociated bacteria were isolated from the external and internal surfaces of AM fungal spore morphotypes from the two countries. The bacterial isolates were evaluated for their PGP abilities such as phosphate solubilisation, indole-3-acetic acid production, ammonia production and inhibition of the fungal pathogens Fusarium oxysporum and Phythophthora nicotianae through mechanisms such as siderophore and/ or hydrolytic enzyme production. A total of 23 bacterial isolates from both South Africa and Argentina showing the most potential to be PGP, were identified molecularly as belonging to the genera Acinetobacter, Alcaligenes, Bacillus, Microbacterium, Micrococcus, Serratia and Staphylococcus. The ability of ten selected bacterial isolates showing multiple PGP capacity were evaluated for their plant growth promotion and mycorrhizal colonisation enhancement ability on raspberry (Rubus idaeus cv. Meeker). Significant differences in increased shoot and root dry weights were shown by the treatments compared to the uninoculated control. The highest increase in shoot and root dry weights were shown by South African (Bacillus mycoides) and Argentinean (Alcaligenes faecalis) isolates. AM fungal colonisation was significantly enhanced by the South African (Bacillus mycoides) and Argentinean (Micrococcus luteus) isolates compared to the AM fungal singly inoculated control.
- Full Text:
- Date Issued: 2013
Isocyanide complexes of rhenium
- Authors: Schoultz, Xandri
- Date: 2013
- Subjects: Isocyanides , Rhenium , Complex compounds
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10360 , http://hdl.handle.net/10948/d1021069
- Description: This study investigates the synthesis of rhenium(III)-isocyanide complexes with potentially bidentate ligands, as well as the reactivity of isocyanide ligands toward rhenium(I) and (V). The crystal structures of all the complexes have been determined by X-ray diffraction methods. The coordination behaviour of trans-[ReIIICl3(t-BuNC)(PPh3)2] with aniline and its derivatives were investigated. The isocyanide-containing rhenium(V) complexes [ReCl3(t-BuNC)(L)(PPh3)] were isolated, with the ligands H2L (aniline, o-phenylenediamine and anthranilic acid). In all these complexes the dianionic ligands L are coordinated monodentately as the imide. However, with 2-aminophenol the complexes [ReVCl2(t-BuNC)(L)(PPh3)2](ReO4) and [ReIIICl2(t-BuNC)(ibq)(PPh3)2] (ibq- = 2-iminobenzoquinonate) were identified as the products. [ReCl2(t-BuNC)(L)(PPh3)2](ReO4) is the product of a disproportionation reaction from Re(III) to Re(VII) and Re(V). All the above complexes show a distorted octahedral geometry around the rhenium. The products of the reaction of the Re(I) complex [Re(CO)5Cl] with isocyanides (tert-butyl- and cyclohexylisocyanide) are reported. Rhenium(I) tricarbonyl complexes of the form [Re(CO)3(CNR)2Cl] were isolated and they were characterized structurally and spectroscopically. The tricarbonyls are coordinated in the typical facial-fashion, whereas the isocyanides are coordinated cis to each other. The reaction of [Re(CO)3(t-BuNC)2Cl] with H2O led to the formation of the rhenium(I) complex [Re(CO)3(t-BuNC)2(OH2)] in which the aquo ligand can readily be substituted by a more complex ligand. The reaction of the rhenium(V) complexes cis-[ReO2I(PPh3)2] and mer-[ReOCl3(SMe2)(OPPh3)] with isocyanides were studied. The seven-coordinate trigonal prismatic, square faced monocapped rhenium(III) complex [ReI3(t-BuNC)3(PPh3)] was surprisingly isolated upon reacting cis-[ReO2I(PPh3)2] with tert-butyl isocyanide. The dimeric complex (μ-O)[ReOCl2(CNC6H11)2]2 was obtained from the reaction of mer-[ReOCl3(SMe2)(OPPh3)] with cyclohexyl isocyanide.
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- Date Issued: 2013
Linking institutional and ecological provisions for wastewater treatment discharge in a rural municipality, Eastern Cape, South Africa
- Authors: Muller, Matthew Justin
- Date: 2013
- Subjects: Sewage disposal plants -- South Africa -- Sundays Estuary (Eastern Cape) , Sewage disposal -- Law and legislation -- South Africa , Sewage -- Environmental aspects -- South Africa , Water-supply -- South Africa -- Management , Sewage disposal in rivers, lakes, etc. -- South Africa -- Sundays Estuary (Eastern Cape) , Rivers -- Environmental aspects -- South Africa -- Sundays Estuary (Eastern Cape) , Rivers -- Regulation -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:6044 , http://hdl.handle.net/10962/d1013048
- Description: The Green Drop Certification Programme, launched in 2008 alongside the Blue Drop Certification Programme, aims to provide the Department of Water Affairs with a national overview of how municipalities and their individual wastewater treatment works (WWTW) are complying with licence conditions set by the National Water Act (NWA) (No. 36 of 1998; DWAF 1998) and the Water Services Act (No. 108 of 1997; DWAF 1998). By publishing the results of each municipality’s performance, the programme aims to ensure continuous improvement in the wastewater treatment sector through public pressure. The programme has been identified by this project as a necessary linking tool between the NWA and the Water Services Act to ensure protection and sustainable use of South Africa’s natural water resources. It does this through assisting municipalities to improve their wastewater treatment operations which in theory will lead to discharged effluent that is compliant with discharge licence conditions. These discharge licences form part of the NWA’s enforcement tool of Source Directed Controls (SDC) which help a water resource meet the ecological goals set for it as part of Resource Directed Measures (RDM). The link between meeting the required SDC and achieving the RDM goals has never been empirically tested. This project aimed to determine the present ecological condition of the Uie River, a tributary of the Sundays River which the Sundays River Valley Municipality (SRVM) discharges its domestic effluent into. It then determined whether the SRVM’s WWTW was complying with the General Standard licence conditions and what the impact of the effluent on the river was through the analysis of monthly biomonitoring, water chemistry and habitat data. Lastly, the project examined the effectiveness of the Green Drop Certification Programme in bringing about change in the SRVM’s wastewater treatment sector, which previously achieved a Green Drop score of 5.6 percent. It wanted to examine the underlying assumption that a WWTW which improves its Green Drop score will be discharging a better quality effluent that will help a water resource meets the RDM goals set for it. The Kirkwood WWTW did not have a discharge licence at the time of assessment and was thus assessed under the General Standard licence conditions. It was found that the Kirkwood WWTW was not complying with the General Standard discharge licence conditions in the Uie River. This was having a negative impact on the river health, mainly through high concentrations of Total Inorganic Nitrogen (TIN-N), orthophosphate and turbidity. The SRVM should see an improvement in its Green Drop score for the Kirkwood WWTW. However, the municipality showed no implementation of necessary programmes. Implementation of these programmes would help the SRVM meet the General Standard licence conditions (part of SDC) which would help the Uie River meet the RDM goals set for it.
- Full Text:
- Date Issued: 2013
Livelihood and coping strategy changes along rural-urban continua with an emphasis on natural resources
- Authors: Evans, Michelle Leigh
- Date: 2013
- Subjects: Natural resources -- South Africa -- Queenstown Natural resources -- South Africa -- Phalaborwa Rural-urban divide -- South Africa -- Queenstown Rural-urban divide -- South Africa -- Phalaborwa Income -- South Africa -- Queenstown Income -- South Africa -- Phalaborwa Women heads of households -- South Africa -- Queenstown Women heads of households -- South Africa -- Phalaborwa Adjustment (Psychology)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4731 , http://hdl.handle.net/10962/d1001958
- Description: Rapid urbanisation is one of the greatest challenges facing both developed and developing countries. Sub-Saharan Africa has historically been one of the least developed and least urbanised areas of the world. However, urbanisation is now occurring much more rapidly in countries that have lower levels of per capita income. Therefore, in the coming decades, urban population growth is expected to be more widespread in the developing countries of the world. Most research on the role of natural resources focuses on rural communities and little is known about the contribution these resources make along the rural-urban continuum in small and medium sized towns as well as the contribution to total livelihoods. This is because researchers and policy makers have often treated rural and urban areas and their residents as distinct entities that should be studied in isolation. This, however, is not a true reflection of household livelihoods which often include both rural and urban elements. This study therefore analysed the impact of urbanisation on livelihoods along a rural-urban continuum with an emphasis on natural resources in South Africa. The main characteristics as well as the livelihood portfolios of respondent households were investigated. Secondly, the coping strategies used by households along the rural-urban continuum were explored, and disaggregated according to the gender of the household head. Data were collected along the rural-urban continuum of two small towns, namely Queenstown, located in the Eastern Cape province and Phalaborwa, located in the Limpopo Province of South Africa. Sampling covered the town, peri-urban areas, townships and adjacent rural households. A standardised survey instrument was used to capture household details and livelihood activities and a total of 272 interviews were conducted. The rural areas near both towns were poorer than the township and urban areas with regards to assets, access to employment and annual household income across all cash and non-cash income streams. The engagement in land-based activities increased towards the rural areas. The use of natural resources, as well as the number of resources collected, increased along the continuum towards the rural areas, with 12.0% to 49.0% of urban households, 30.0% to 88.0% of township households and between 80.0% and 100.0% of rural households engaging in the use and collection of natural resources. While natural resource use and collection was lowest in the urban areas, a significant amount of resources were still collected by urban households. Income portfolios for all households were calculated to determine the direct-use value of wild natural capital to livelihoods as well as the contribution made from land (arable and livestock farming), welfare grants and employment. Employment, barring one exception in the rural areas of Phalaborwa, was the largest contributor in terms of mean annual income along the continuum in both towns, followed by grants and pensions in the township and rural areas. In Phalaborwa, however, wild natural capital was found to be the largest contributor to local livelihoods, contributing 48.0% of the mean annual income. Household portfolios become more diversified in the poorer, rural areas as well as in households headed by females. The main shocks reported along the continuum in both Queenstown and Phalaborwa were death in the family, followed by a loss of employment, which was concentrated in male-headed households. Coping strategies resulting in the attainment of cash income fast, such as borrowing money from friends/relatives and cashing in retirements savings were favoured over longer term strategies such as finding local wage employment. Female-headed households were found to rely significantly on social groups or clubs as a coping strategy, highlighting the importance of social capital and social relations in female-headed households
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- Date Issued: 2013
Livelihoods and natural resource use along the rural-urban continuum
- Authors: Ward, Catherine Dale
- Date: 2013
- Subjects: Natural resources -- South Africa , Human ecology -- South Africa , Cities and towns -- Growth -- South Africa , Natural resources -- Management -- South Africa , Rural poor -- South Africa , Urban poor -- South Africa , Sustainable development -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4727 , http://hdl.handle.net/10962/d1001669 , Natural resources -- South Africa , Human ecology -- South Africa , Cities and towns -- Growth -- South Africa , Natural resources -- Management -- South Africa , Rural poor -- South Africa , Urban poor -- South Africa , Sustainable development -- South Africa
- Description: Over the last century, developing countries have undergone rapid urbanisation resulting in marked social, economic and environmental changes. Africa is the least urbanised continent in the world but trends indicate that it is also the most rapidly urbanising region, accompanied by rising urban poverty. Urbanisation processes are often most pronounced in smaller urban centres since they experience the most severe pressures of population growth. Little is known about the role natural resources play along the rural-urban continuum and even less is known about the contribution of these resources within an urban context, particularly in small urban centres. In many sub-Saharan African cities, urban agriculture (the informal production of food in urban areas) has been used as a strategy to cope with increasing poverty levels but its role remains widely debated and uncertain. This thesis seeks to analyse the impacts of urbanisation on livelihoods and natural resource use, including home gardening and the collection of wild resources, in two South African towns and data was collected along the rural-urban continuum in Queenstown (Eastern Cape province) and Phalaborwa (Limpopo Province). Practices and contributions associated with agriculture and wild resource use were found to be significantly higher in Phalaborwa and this could be attributed to favourable environmental conditions and accessibility to wild resources due to the surrounding Mopani Bushveld. Rural households in Queenstown and Phalaborwa were more reliant on natural resources than their urban counterparts, but still diverse and incorporated a number of land-based and cash income generating strategies. Urban households tended to rely on one primary cash income strategy such as wage employment or state grants. However, natural resources did appear to play a subtle role in urban settings and particularly in the townships, where exclusion of natural resource contributions saw poverty levels increase up to 5%. Home gardening was practised by a wide range of people and not restricted to any one income group and, not surprisingly, wealthy cultivators who had access to resources such as land, water and fertilizer enjoyed increased benefits such as high produce yields. The results obtained suggest that rural-urban dynamics are complex and natural resource use in local livelihoods is contextualised within environmental settings, social preferences and historical contexts. Increasing pressures from the influx of people into small urban centres calls for a better understanding to how these processes are affecting livelihoods and natural resources to ensure sustainable management in the future.
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- Date Issued: 2013
Log analysis aided by latent semantic mapping
- Authors: Buys, Stephanus
- Date: 2013 , 2013-04-14
- Subjects: Latent semantic indexing , Data mining , Computer networks -- Security measures , Computer hackers , Computer security
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4575 , http://hdl.handle.net/10962/d1002963 , Latent semantic indexing , Data mining , Computer networks -- Security measures , Computer hackers , Computer security
- Description: In an age of zero-day exploits and increased on-line attacks on computing infrastructure, operational security practitioners are becoming increasingly aware of the value of the information captured in log events. Analysis of these events is critical during incident response, forensic investigations related to network breaches, hacking attacks and data leaks. Such analysis has led to the discipline of Security Event Analysis, also known as Log Analysis. There are several challenges when dealing with events, foremost being the increased volumes at which events are often generated and stored. Furthermore, events are often captured as unstructured data, with very little consistency in the formats or contents of the events. In this environment, security analysts and implementers of Log Management (LM) or Security Information and Event Management (SIEM) systems face the daunting task of identifying, classifying and disambiguating massive volumes of events in order for security analysis and automation to proceed. Latent Semantic Mapping (LSM) is a proven paradigm shown to be an effective method of, among other things, enabling word clustering, document clustering, topic clustering and semantic inference. This research is an investigation into the practical application of LSM in the discipline of Security Event Analysis, showing the value of using LSM to assist practitioners in identifying types of events, classifying events as belonging to certain sources or technologies and disambiguating different events from each other. The culmination of this research presents adaptations to traditional natural language processing techniques that resulted in improved efficacy of LSM when dealing with Security Event Analysis. This research provides strong evidence supporting the wider adoption and use of LSM, as well as further investigation into Security Event Analysis assisted by LSM and other natural language or computer-learning processing techniques. , LaTeX with hyperref package , Adobe Acrobat 9.54 Paper Capture Plug-in
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- Date Issued: 2013
Management of capital expenditure for infrastructure programmes in the North-West Province
- Authors: Norgbey, Wisdom Selorm
- Date: 2013
- Subjects: Construction industry -- Capital investments , Infrastructure (Economics) -- Management , Expenditures, Public
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:9718 , http://hdl.handle.net/10948/d1021075
- Description: The need for programme management to align, coordinate and manage a portfolio of construction projects to deliver benefits that would not be achievable if the projects were managed independently in a turbulent economic environment, limitations of project management, and increasing stakeholder expectations cannot be over emphasised. In the construction industry, the implementation of programme management has been bedevilled with major challenges of which the North West Department of Public Works (DPW) CAPEX programme is no exception. The CAPEX programme has been noted for delivering fewer infrastructure projects as planned in terms of budget, time, and other expectations. The research documented in this treatise thus examined the existing programme management approach of the North West DPW CAPEX programme with respect to generally accepted standards and practices. A mixed research approach was used to identify problems such as delays in payment of works, poor reporting standards, improper planning of works, procurement difficulties, and inadequate management structures. The results point to excessive bureaucratic processes, improper information management systems and lack of commitment and ownership towards government works as the major underlying causes of the programme predicaments. Dogmatic implementation of government’s black economic empowerment policies and inadequate in-house capacity were also contributing factors. The research findings imply that effective processes should be laid for prompt payment of works certificates and invoices. Improved reporting standards and proper planning of the programme as a whole and its constituent projects is necessary for the attainment of stipulated goals. In particular, it is crucial to ensure that adequate management considerations in terms of capacity, infrastructure, structures and expertise are put in place while the procurement processes should be continually reviewed for programme success purposes.
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- Date Issued: 2013
Mechanisms of luminescence in α-Al₂O₃:C : investigations using time-resolved optical stimulation and thermoluminescence techniques
- Authors: Nyirenda, Angel Newton
- Date: 2013
- Subjects: Thermoluminescence Aluminum oxide Optically stimulated luminescence dating Radiation dosimetry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5447 , http://hdl.handle.net/10962/d1002961
- Description: Carbon-doped aluminium oxide, α-Al₂O₃:C, is a ultra-sensitive dosimeter of topical research interest. The aim of this project was to investigate the dynamics of luminesce in this material. The methods of investigation consisted of thermoluminescence and time-resolved optical stimulation. Thermoluminescence measurements provide information on trap distribution and kinetic parameters of the traps involved in luminescence whereas time-resolved optical stimulation is a handy technique in investigation of luminescence lifetimes and provides an insight into the charge transitions between traps and recombination centres. Measurements were made on samples annealed at a nominal temperature of 900⁰C for 15 minutes. The material shows the presence of five thermoluminescence peaks at 37⁰C, 160⁰C, 300⁰C 410⁰C, and 480⁰C at a heating rate of 0.03k/s when irradiated to 6.0 Gy of beta. The main peak at 160⁰C, shows a linear dose response for doses between 0.1 Gy and 10 Gy and then goes sublinear above 10 Gy, the peak at 37⁰C shows a sublinear dose response for doses between 0.1 Gy and 10 Gy and appears to saturate thereafter, whereas the dose response of the peak at 300⁰C goes from linear to supralinear then apparently quadratic behaviour in the dose range of 0.1 Gy to 16.0 Gy. The trap depth of the main peak, that is, its activation energy as determined below the conduction band, has been approximated at 1.3 eV with a kinetic order of approximately 1.2. Time-resolved optical stimulation has been used to investigate luminescence lifetimes. The mean luminescence lifetime obtained for the sample at ambient temperatures is 35.0±1.0 ms. The investigations of the dependence of luminescence lifetimes on measurement temperature show that the material suffers from thermal quenching effects at measurement temperatures above 140⁰C with the activation energy of thermal quenching estimated at 1.045±0.002 eV. Shallow traps i.e. traps lying close to the conduction band, seem to elongate the lifetimes of optically stimulated luminescence in the material at temperatures between 30⁰C - 80⁰C due to charge retrapping. The material exhibits both fading and recuperation of the optically stimulated luminescence signal with storage time.
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- Date Issued: 2013
Medicinal properties of some plants used for the treatment of skin disorders in the O. R. Tambo and Amathole Municipalities of the Eastern Cape Province, South Africa
- Authors: Mahachi, Josia
- Date: 2013
- Subjects: Medicinal plants -- Skin -- Diseases -- Treatment , South Africa -- Eastern Cape Province
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:18487 , http://hdl.handle.net/11260/101
- Description: The use of medicinal plants for treatment of skin infections and improvement of skin tone was assessed. The study covered Amathole and OR Tambo municipalities of the Eastern Cape Province of South Africa. The study sought to identify and document some medicinal plants which are used by the indigenous people on the skin, evaluate some biological properties which attribute to their use for therapeutic use. This report provides ethnobotanical data on some plant which were identified. Six medicinal plants (Kniphofia drepanophylla, Gnidia capitata, Hypoxis hemerocallidea, Syzgium cordatum, Macaranga capensis and Protorhus longifolia) which were implicated for treatment of skin diseases were screened for their antibacterial and antioxidant properties. Guided questionnaires were used to interview and gather ethnobotanical information from the traditional healers. Members of the communities which were indicated to be knowledgeable on use of medicinal plants in the areas were visited and interviewed. The results revealed that a total of 45 plant species distributed in 41 Genera belonging to 28 Families are used for treatment of skin infections and improvement of skin texture. The plant medicines were reported to be used as remedies against common skin problem such as wounds, pimples, acnes and itches. Some were reported to have anti-inflammatory effect on the skin while other were reported to oil dry skin and prevent skin dryness and dry eczematous conditions. Others like Cassipourea flanaganii, and Spirostachys africana were commonly used to enlighten skin and protect skin from ultra-violet radiation. The most common mode of preparation of these medicinal plants was pastes or decoctions. Sometimes crushed plant materials were put in bathing water or boiled and steamed on affected parts. It was reported that mixing pastes with oil, animal fat and milk improve medicinal properties. Water, methanol and acetone extracts of K. drepanophylla, G. capitata, H. hemerocallidea, S. cordatum, M. capensis and P. longifolia were screened against five strains of Gram negative bacteria. The results revealed that water extracts from five plant species inhibited two or more strains of bacteria with the most common minimum inhibitory concentrations (MICs) ranging between 5,0 to 10,0 mg/ml with the exception of aqueous extracts of K. drepanophylla which failed to inhibit all strains of bacteria. The screening of methanol extract of these plants for antioxidant and free radical activity revealed a significant activity with 1, 1-diphenyl-2-picryl-hydrazyl (DPPH) free radical (DPPH). The extracts of P. longifolia, G. capitata, M. capensis, S. cordutum and H. hemerocallidea showed significantly higher free radical scavenging activity with IC50 of ranging from about 11.0 to 41.2 μg/ ml while the IC50 value for K. drepanophylla could not be determined at 100 μg/ ml. Generally the study showed that medicinal plants still play a very important role in the health care delivery system, especially in the O R Tambo and Amathole municipalities of the Eastern Cape. Botanical medicine remains pivotal in the treatment of skin ailments and improvement of the skin tone.
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- Date Issued: 2013
Microsatellite and morphometric analysis of chokka squid (Loligo reynaudi) from different spawning aggregations around the South African coast
- Authors: Stonier, Terence Anthony
- Date: 2013
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5344 , http://hdl.handle.net/10962/d1006779
- Description: Accurate information on stock structure is very important to the effective management of any commercially exploited species (Angel et al. 1994), particularly in annual species like Loligo reynaudi. Previous molecular work on a number of fish and cephalopod species has shown that stock structuring may be more complex than originally believed and while much scientific work has been conducted on Loligo reynaudi to date, molecular work has been lacking and this species’ fishery is currently managed as a single stock. The primary aim of this project was to examine the population genetics of Loligo reynaudi on a molecular level, by looking at the levels of genetic variation between different spawning aggregations along the inshore distribution of the chokka squid, with particular attention being paid to any variation between Eastern Cape and Agulhas Bank groups. The secondary aim was to conduct a morphological analysis on samples from the same major areas in order to see if any genetic variation observed would be complemented by phenotypic variation. Two separate sample sets were collected; Genetic samples were collected from 6 different spawning sites along the South African Coast between April and July, 2006 and whole individuals for morphometric analysis were collected from 4 spawning sites between April and July 2007. Samples were screened for genetic variation between different spawning aggregations along the inshore distribution of chokka squid, from Port Alfred in the Eastern Cape, to the western Agulhas Bank. After this a morphometric analysis on samples from the same major areas, Eastern Cape, Agulhas Bank and Angola, was carried out. Genetic results showed significant variation between some of the sample groups. As expected, the Angolan outgroup consistently showed significant variation from other samples, while there was evidence of differentiation between the South African samples themselves. These results could have implications for the previously documented life cycle model of Loligo reynaudi and provide a basis for further study at a finer resolution into where exactly the boundaries of these different groupings can be found. This stock structuring has implications for the management of the species and warrants further genetic research with microsatellites proving to be a powerful tool in the explanation of stock structuring. Unfortunately, due to possible errors in taking measurements, morphometric analysis did not yield useful results which can be described and interpreted in this study. It is felt that further genetic study conducted on a finer scale, should be accompanied by a repeat of the morphometric analysis.
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- Date Issued: 2013
Morphology, patterns and processes in the Oyster Bay headland bypass dunefield, South Africa
- Authors: McConnachie, Lauren Bernyse
- Date: 2013
- Subjects: Sand dune conservation -- South Africa -- Eastern Cape Sand dune ecology -- South Africa -- Eastern Cape Coastal ecology -- South Africa -- Eastern Cape Sedimentation and deposition -- South Africa -- Eastern Cape Beach erosion -- South Africa -- Eastern Cape Coastal zone management -- South Africa -- Eastern Cape Shore protection -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4804 , http://hdl.handle.net/10962/d1001904
- Description: Studies of the dunefield systems crossing the Cape St. Francis headland in the Eastern Cape have focused on the role that wind plays in sediment transfer in coastal dunefield systems, with limited consideration of the role of water. The aim of this study was to improve understanding of the morphology, processes and patterns within the Oyster Bay HBD system, focussing particularly on surface water and groundwater interactions and the role of surface water in sediment transfer across the dunefield system. An extensive field survey was conducted, to collect related data, complimented by spatial and temporal analysis of the study area using GIS. The key findings from this research were the apparent differences between the western and eastern regions of the dunefield with regard to specific drivers and the respective processes and responses. Wind is the major driver of change up to and across the crest of the dunefield. In the eastern region water (ground water, surface water and the Sand River System) is the primary agent of sediment flux through processes of aggregation and slumping as well as episodic events including debris flows. This study has highlighted a need for further quantitative studies that investigate the movement of sediment through dunefield systems such as this (where water is at or near the land surface). The paradigm that sediment flux is entirely due to wind is almost certainly simplistic, and deeper understanding of these systems is needed , Maiden name: Elkington, Lauren
- Full Text:
- Date Issued: 2013
Morphology, patterns and processes in the Oyster Bay headland bypass dunefield, South Africa
- Authors: Elkington, Lauren
- Date: 2013
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20984 , http://hdl.handle.net/10962/5879
- Description: Studies of the dunefield systems crossing the Cape St. Francis headland in the Eastern Cape have focused on the role that wind plays in sediment transfer in coastal dunefield systems, with limited consideration of the role of water. The aim of this study was to improve understanding of the morphology, processes and patterns within the Oyster Bay HBD system, focussing particularly on surface water and groundwater interactions and the role of surface water in sediment transfer across the dunefield system. An extensive field survey was conducted, to collect related data, complimented by spatial and temporal analysis of the study area using GIS. The key findings from this research were the apparent differences between the western and eastern regions of the dunefield with regard to specific drivers and the respective processes and responses. Wind is the major driver of change up to and across the crest of the dunefield. In the eastern region water (ground water, surface water and the Sand River System) is the primary agent of sediment flux through processes of aggregation and slumping as well as episodic events including debris flows. This study has highlighted a need for further quantitative studies that investigate the movement of sediment through dunefield systems such as this (where water is at or near the land surface). The paradigm that sediment flux is entirely due to wind is almost certainly simplistic, and deeper understanding of these systems is needed.
- Full Text:
- Date Issued: 2013
Movement patterns and genetic stock delineation of an endemic South African sparid, the Poenskop, Cymatoceps nasutus (Castelnau, 1861)
- Authors: Murray, Taryn Sara
- Date: 2013
- Subjects: Fish stock assessment -- South Africa , Sparidae -- South Africa , Fishes -- Reproduction -- South Africa , Fishing -- South Africa , Fish populations -- South Africa , Fishes -- Behavior -- South Africa , Marine fishes -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5178 , http://hdl.handle.net/10962/d1001514 , Fish stock assessment -- South Africa , Sparidae -- South Africa , Fishes -- Reproduction -- South Africa , Fishing -- South Africa , Fish populations -- South Africa , Fishes -- Behavior -- South Africa , Marine fishes -- South Africa
- Description: Poenskop Cymatoceps nasutus (Pisces: Sparidae), an endemic South African sparid, is an important angling species being predominantly targeted by the recreational shore and skiboat sector. This species is slow-growing, long-lived, late-maturing and sex-changing, making poenskop acutely sensitive to over-exploitation. Despite interventions, such as the imposition of size and bag limits (currently 50 cm TL and one per licensed fisher per day) by authorities, catch-per-unit-effort trends reflect a severe and consistent stock decline over the last two decades. Poenskop has been identified as a priority species for research and conservation. Although the biology and population dynamics of this species have been well-documented, little is known about the movement behaviour of poenskop. Furthermore, there is a complete lack of information on its genetic stock structure. This thesis aimed to address the current knowledge gaps concerning movement behaviour and genetic stock structure of poenskop, making use of a range of methods and drawing on available information, including available fishery records as well as published and unpublished survey and research data, and data from long-term monitoring programmes. Analysis of available catch data (published and unpublished) revealed a decline in the number of poenskop caught as well as size of fish taken over the last two decades, ultimately reflecting the collapse of the stock (estimated to be at 20% of their pristine level). Improved catch-per-unit-effort data from the Tsitsikamma National Park Marine Protected Area (MPA), and larger poenskop being caught in the no-take areas than adjacent exploited areas of the Pondoland MPA confirmed that MPAs can be effective for the protection and management of poenskop. The current MPA network in South Africa is already wellestablished, and encompasses considerable reef areas, being preferable for poenskop habitation. Conventional dart tagging and recapture information from three ongoing, long-term fishtagging projects, conducted throughout the poenskop’s distribution, indicated high levels of residency at all life-history stages. Coastal region, seasonality and time at recapture did not appear to have a significant effect on the level of movement or distance moved. However, on examining the relationship among coastal movements and fish size and ages, larger and older fish (adults) moved greater distances, with juveniles and sub-adults showing high degrees of residency. An estimation of home-range size indicated smaller poenskop to hold smaller home-ranges, while larger poenskop hold larger home-ranges. Large easterly displacements of a number of adult poenskop is in accordance with previous findings that this species may undertake a unidirectional migration up the coastline of South Africa where they possibly settle in Transkei waters for the remainder of their lives. This high level of residency makes poenskop vulnerable to localised depletion, although they can be effectively protected by suitable MPAs. Despite considerable tagging effort along the South African coastline (2 704 poenskop tagged with 189 recaptures, between 1984 and 2010), there remains limited information on the connectivity of different regions along the South African coastline. This was addressed using mitochondrial DNA sequencing. The mitochondrial DNA control region was used due to its high substitution rate, haploid nature, maternal inheritance and absence of recombination. The mtDNA sequencing showed no evidence of major geographic barriers to gene flow in this species. Samples collected throughout the core distribution of poenskop showed high genetic diversity (h = 0.88, π = 0.01), low genetic differentiation among regions, no spatial structure (ɸST = 0.012, p = 0.208) and no evidence of isolation by distance. The collapsed stock status of poenskop as well as the fact that it is being actively targeted by recreational and commercial fishers suggests that this species requires improved management, with consideration given to its life-history style, residency and poor conservation status. Management recommendations for poenskop, combined with increasing South Africa’s existing MPA network, include the possibility of setting up a closed season (during known spawning periods) as well as the decommercialisation of this species. The techniques used and developed in this study can also be adopted for other overexploited linefish species.
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- Date Issued: 2013
On meshless methods : a novel interpolatory method and a GPU-accelerated implementation
- Authors: Hamed, Maien Mohamed Osman
- Date: 2013
- Subjects: Engineering mathematics , Numerical analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:10509 , http://hdl.handle.net/10948/d1018227
- Description: Meshless methods have been developed to avoid the numerical burden imposed by meshing in the Finite Element Method. Such methods are especially attrac- tive in problems that require repeated updates to the mesh, such as problems with discontinuities or large geometrical deformations. Although meshing is not required for solving problems with meshless methods, the use of meshless methods gives rise to different challenges. One of the main challenges associated with meshless methods is imposition of essential boundary conditions. If exact interpolants are used as shape functions in a meshless method, imposing essen- tial boundary conditions can be done in the same way as the Finite Element Method. Another attractive feature of meshless methods is that their use involves compu- tations that are largely independent from one another. This makes them suitable for implementation to run on highly parallel computing systems. Highly par- allel computing has become widely available with the introduction of software development tools that enable developing general-purpose programs that run on Graphics Processing Units. In the current work, the Moving Regularized Interpolation method has been de- veloped, which is a novel method of constructing meshless shape functions that achieve exact interpolation. The method is demonstrated in data interpolation and in partial differential equations. In addition, an implementation of the Element-Free Galerkin method has been written to run on a Graphics Processing Unit. The implementation is described and its performance is compared to that of a similar implementation that does not make use of the Graphics Processing Unit.
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- Date Issued: 2013
Petrogenesis of the Bysteek and Koenap Formation Migmatites, Central Namaqualand
- Authors: Moodley, Jason Anthony
- Date: 2013
- Subjects: Petrogenesis -- South Africa -- Namaqualand Migmatite -- South Africa -- Namaqualand Granulite -- South Africa -- Namaqualand Thermodynamics Geology, Stratigraphic -- Proterozoic Geology, Stratigraphic -- Proterozoic -- South Africa -- Namaqualand
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4914 , http://hdl.handle.net/10962/d1001574
- Description: The Mesoproterozoic rocks of the Bysteek and Koenap Formations of the Arribees Group are exposed within a NW-SE striking antiformal structure comprised of mafic granulites and metapelitic diatexites, and a number of marble and calc-silicate rock layers. The mafic granulites of the Bysteek Formation show a typological variety of anatectic features, including nebulitic, stromatitic mesosomes, melanosomes, quartz syenitic leucocratic vein networks and syenitic pools. Melanosomes consist of hedenbergitic to diopside-rich clinopyroxene (XMg: 0.40), anorthitic plagioclase (An90), with some quartz, minor apatite and titanite. Anatexis was caused by biotite dehydration melting and formed a melt of probably granitic composition. The leucosome composition ranges from either alkali-feldspar-granitic to plagioclase rich or granitic. This variation is interpreted as a result of variable extraction of melt from the source to granitic pools. The diatexites of the Koenap Formation are most likely of metapelitic or meta-greywacke origin. They are texturally variable but always contain high modal contents of alkali feldspar and quartz which generally form magmatic textures. Almandine-rich garnet (XMg: 0.18-0.25), cordierite (XMg: 0.71) form secondary biotite, sillimanite and magnetite during retrograde breakdown. Thermodynamic modelling of mafic granulite compositions suggests peak P-T conditions of ~865 °C and 8.6 kbar. Occasionally, garnet rich in ferric iron (XAdr: 0.55) forms by plagioclase-clinopyroxene breakdown under oxidising conditions at ~6 kilobar and ~ 800 °C. At the same stage amphibole forms in some melanosomes. P-T estimations for the diatexites based on thermodynamic modelling suggest the equilibration of the assemblage garnet, cordierite, alkali feldspar and melt at ~860 °C and 5.5 kbar. Conditions comparable to the peak pressure in the mafic granulites could not be established. However, since the diatexites and the mafic granulites are closely related in the field and no evidence of juxtaposition after the thermal peak exists, the P-T record of the diatexites might be incomplete
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- Date Issued: 2013
Photophysical properties of zinc carboxy phthalocyanine-quantum dot conjugates
- Authors: Sekhosana, Kutloano Edward
- Date: 2013 , 2013-03-27
- Subjects: Phthalocyanines , Quantum dots , Zinc , Photochemistry , Atomic force microscopy , Transmission electron microscopy , Raman spectroscopy , Infrared spectroscopy , X-ray photoelectron spectroscopy
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4276 , http://hdl.handle.net/10962/d1001652 , Phthalocyanines , Quantum dots , Zinc , Photochemistry , Atomic force microscopy , Transmission electron microscopy , Raman spectroscopy , Infrared spectroscopy , X-ray photoelectron spectroscopy
- Description: This thesis presents work based on the interactions of water soluble caboxylated zinc phthalocyanines (Pcs) and coreshell quantum dots (QDs). The Pcs are ZnPc(COOH)₈ and ZnPc(COOH)₄ and coreshell QDs are CdTe@ZnS-GSH. GSH = L-glutathione. Characterization and photophysical studies of conjugates were carried out. The approach of coordinating Pcs to QDs was achieved using an organic cross linker, N-N’-dicyclohexylcarbodiimide (DCC) at pH 10 at room temperature. Employing atomic force microscopy (AFM), transmission electron microscopy (TEM), X-ray diffraction (XRD), Raman, infrared and X-ray photoelectron spectroscopies, the formation of the conjugates was confirmed. Upon conjugation with Pc derivatives, the fluorescence quantum yield of CdTe@ZnS-GSH decreased due to energy transfer from the QDs to the Pc. The average fluorescence lifetime of the CdTe@ZnS-GSH QD also decreased upon conjugation. The föster resonance energy transfer (FRET) behaviour of CdTe@ZnS-GSH-ZnPc(COOH)₄ conjugates was compared to that of CdTe@ZnS-GSH-ZnPc(COOH)₈. Higher FRET efficiencies were observed for CdTe@ZnS-GSH-ZnPc(COOH)₄-mixed or CdTe@ZnS-GSH-ZnPc(COOH)₄-linked compared to the corresponding CdTe@ZnS-GSH-ZnPc(COOH)₈-mixed or CdTe@ZnS-GSH-ZnPc(COOH)₈-linked. Triplet quantum yield (ΦT) and lifetime (ΤT) of ZnPc(COOH)₈ were found to increase in the presence of coreshell QDs. Though the singlet quantum yield (ΦΔ) value of ZnPc(COOH)8 was lower than ΦT , there was a slight upsurge in the ΦT in the presence of QDs. , Microsoft� Word 2010 , Adobe Acrobat 9.53 Paper Capture Plug-in
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- Date Issued: 2013
Photophysicochemical and photodynamic antimicrobial chemotherapeutic studies of novel phthalocyanines conjugated to silver nanoparticles
- Authors: Rapulenyane, Nomasonto
- Date: 2013 , 2013-06-10
- Subjects: Phthalocyanines , Photochemistry , Photochemotherapy , Cancer -- Photochemotherapy , Anti-infective agents , Escherichia coli , Nanoparticles , Silver , Zinc
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4291 , http://hdl.handle.net/10962/d1003912 , Phthalocyanines , Photochemistry , Photochemotherapy , Cancer -- Photochemotherapy , Anti-infective agents , Escherichia coli , Nanoparticles , Silver , Zinc
- Description: This work reports on the synthesis, characterization and the physicochemical properties of novel unsymmetrically substituted zinc phthalocyanines: namely tris{11,19, 27-(1,2- diethylaminoethylthiol)-2-(captopril) phthalocyanine Zn ((ZnMCapPc (1.5)), hexakis{8,11,16,19,42,27-(octylthio)-1-(4-phenoxycarboxy) phthalocyanine} Zn (ZnMPCPc(1.7)) and Tris {11, 19, 27-(1,2-diethylaminoethylthiol)-1,2(caffeic acid) phthalocyanine} Zn ((ZnMCafPc (1.3)). Symmetrically substituted counterparts (tetrakis(diethylamino)zinc phthalocyaninato (3.8), octakis(octylthio)zinc phthalocyaninato (3.9) and tetrakis (carboxyphenoxy)zinc phthalocyaninato (3.10) complexes) were also synthesized for comparison of the photophysicochemical properties and to investigate the effect of the substituents on the low symmetry Pcs. The complexes were successfully characterized by IR, NMR, mass spectral and elemental analyses. All the complexes showed the ability to produce singlet oxygen, while the highest triplet quantum yields were obtained for 1.7, 1.5 and 3.9 (0.80, 0.65 and 0.62 respectively and the lowest were obtained for 1.3 and 3.10 (0.57 and 0.47 respectively). High triplet lifetimes (109-286 μs) were also obtained for all complexes, with 1.7 being the highest (286 μs) which also corresponds to its triplet and singlet quantum yields (0.80 and 0.77 respectively). The photosensitizing properties of low symmetry derivatives, ZnMCapPc and ZnMCafPc were investigated by conjugating glutathione (GSH) capped silver nanoparticles (AgNP). The formation of the amide bond was confirmed by IR and UV-Vis spectroscopies. The photophysicochemical behaviour of the novel phthalocyanine-GSH-AgNP conjugates and the simple mixture of the Ag NPs with low the symmetry phthalocyanines were investigated. It was observed that upon conjugation of the phthalocyanines to the GSH-AgNPs, a blue shift in the Q band was induced. The triplet lifetimes and quantum yields improved upon conjugation as compared to the phthalocyanines (Pc) alone. Complex 1.5 triplet lifetimes increased from 109 to 148 and triplet quantum yield from 0.65 to 0.86 upon conjugation. Fluorescence lifetimes and quantum yields decreased for the conjugates compared to the phthalocyanines alone, due to the quenching caused by the Ag NPs. The antimicrobial activity of the zinc phthalocyanines (complexes 1.3 and 1.5) and their conjugates against Escherichia coli was investigated. Only 1.3 and 1.5 complexes were investigated because of the availability of the sample. In general phthalocyanines showed increase in antibacterial activity with the increase in phthalocyanines concentration in the presence and absence of light. The Pc complexes and their Ag NP conjugates showed an increase in antibacterial activity, due to the synergistic effect afforded by Ag NP and Pcs. Improved antibacterial properties were obtained upon irradiation. 1.5-AgNPs had the highest antibacterial activity compared to 1.3-AgNPs conjugate; these results are in agreement with the photophysical behaviour. This work demonstrates improved photophysicochemical properties of low symm
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- Date Issued: 2013
Photophysicochemical properties of aluminium phthalocyanine-platinum conjugates
- Authors: Malinga, Nduduzo Nkanyiso
- Date: 2013 , 2013-04-05
- Subjects: Phthalocyanines , Photochemistry , Photochemotherapy , Aluminium , Platinum , Nanoparticles , Cancer -- Photochemotherapy
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4285 , http://hdl.handle.net/10962/d1002954 , Phthalocyanines , Photochemistry , Photochemotherapy , Aluminium , Platinum , Nanoparticles , Cancer -- Photochemotherapy
- Description: The combination of chemotherapy and photodynamic therapy was investigated by synthesis and characterization of octacarboxy phthalocyanine covalent conjugates with platinum complexes. This work presents the synthesis, characterization and photophysicochemical properties of aluminium (diaquaplatinum) octacarboxyphthalocyanine and aluminium (diammine) octacarboxyphthalocyanine. The conjugates were prepared by conjugating aluminium octacarboxy phthalocyanine with potassium tetrachloro platinate to yield aluminium tetrakis and trikis (diaquaplatinum) octacarboxy phthalocyanine. The aluminium octacarboxy phthalocyanine was also conjugated with cis-diamminedichloroplatinum to yield aluminium bis and tris (diaquaplatinum) octacarboxy phthalocyanine. From the characterization of the conjugates it was discovered that the aluminium (diaquaplatinum) octacarboxy phthalocyanine had formed platinum nanoparticles with the Pc acting as a capping agent. The triplet lifetimes decreased with the increasing number of platinum complexesconjugated to the Pc. The heavy atom effect improved the overall photophysicochemical properties.
- Full Text:
- Date Issued: 2013
Phylogeography and conservation of a newly identified galaxiid from the Joubertina area, South Africa
- Authors: Mataruse, Gamuchirai
- Date: 2013
- Subjects: Galaxiidae -- South Africa -- Joubertina , Phylogeography -- South Africa -- Joubertina , Galaxiidae -- Conservation -- South Africa -- Joubertina , Galaxiidae -- Effect of exotic animals on -- South Africa -- Joubertina , Galaxiidae -- Effect of habitat modification on -- South Africa -- Joubertina , Galaxiidae -- Genetics -- South Africa -- Joubertina , Galaxiidae -- Variation -- South Africa -- Joubertina , Galaxiidae -- Geographical distribution -- South Africa -- Joubertina
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5199 , http://hdl.handle.net/10962/d1003050 , Galaxiidae -- South Africa -- Joubertina , Phylogeography -- South Africa -- Joubertina , Galaxiidae -- Conservation -- South Africa -- Joubertina , Galaxiidae -- Effect of exotic animals on -- South Africa -- Joubertina , Galaxiidae -- Effect of habitat modification on -- South Africa -- Joubertina , Galaxiidae -- Genetics -- South Africa -- Joubertina , Galaxiidae -- Variation -- South Africa -- Joubertina , Galaxiidae -- Geographical distribution -- South Africa -- Joubertina
- Description: The dispersal of freshwater fishes in the Cape Floristic Region of South Africa has been attributed to river capture events and confluence of rivers during sea level regression. The role of low drainage divides and inter-basin water transfers have received less attention. A unique lineage of Galaxias zebratus (hereafter the Joubertina galaxias) occurs in two currently isolated river systems, the Gamtoos and Krom. The present study mapped the distribution of the Joubertina galaxias and used mitochondrial and nuclear DNA sequences to assess the processes that could have influenced its current distribution pattern. Analyses of both mitochondrial cytochrome ♭ and nuclear (S7) sequences revealed that observed genetic differentiation cannot be explained by isolation between the Gamtoos and Krom River systems. No genetic differentiation was found between the Krom River System and the Twee River (a tributary of the Gamtoos River System). Shallow genetic differentiation (0.4% for cytochrome ♭ and 0.3% for S7) was found between the Krom and the remaining populations in the Gamtoos River System. High levels of genetic structuring were observed within the Gamtoos River System with most tributaries having one or more unique alleles. Inter-basin dispersal during pluvial periods or recent human mediated translocation seems to be the most plausible explanations for presence of the Joubertina galaxias in the Krom River System. The present study also assessed the threats and habitat preferences of the Joubertina galaxias, and an evaluation of the conservation status of this lineage was done. The Joubertina galaxias is threatened mainly by alien fish invasion, habitat loss and loss of genetic diversity due to fragmentation of its populations. Due to its very restricted geographic range, small known population sizes and the intensity of threats to this lineage’s survival, this lineage has been assessed as Endangered. The lineage has a restricted Area of Occupancy (AOO) and Extent of Occurrence (EOO). The extent of occurrence has declined in all tributaries and is continuing to decline in all except two tributaries that are secure. The lineage may have had natural fragmentation among its populations, but recent threats have completely isolated the populations. The threats affect the lineage’s survival potential in the four tributaries which have small populations that are not presently viable. The densities observed for the Joubertina galaxias ranged from 0.16 - 1.3 fish /m² and the number of mature individuals for the whole population seems to be less than 2500 mature individuals. There is therefore a need for specific conservation actions to ensure the long-term survival of this unique lineage.
- Full Text:
- Date Issued: 2013
Polyunsaturated fatty acid metabolism and effects on colon cancer cell biology in vitro.
- Authors: Bulcao, Candice
- Date: 2013
- Subjects: Unsaturated fatty acids , Unsaturated fatty acids in human nutrition , Colon (Anatomy)-- Cancer , Cancer -- Nutritional aspects
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4137 , http://hdl.handle.net/10962/d1016128
- Description: Colon cancer is a leading cause of cancer related deaths worldwide. Lifestyle factors such as diet and exercise have been implicated as important agents in colon cancer development and progression. Epidemiological, in vivo and in vitro studies have found that n-3 polyunsaturated fatty acids (PUFAs) reduce colon carcinoma. The role of n-6 PUFAs remains a controversial topic, with studies indicating both promoting and preventing capabilities published. In order to better understand the effects of PUFAs on colon carcinoma, it is important to have an understanding of how they will be broken down in the body. During this study, in silico metabolism of eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA) and arachidonic acid (AA) predicted the formation of hydroxy-, di-hydroxy- and epoxy-FAs. A gas chromatography-mass spectrometry method was developed and validated for the detection of these PUFAs and their cytochrome P450 (CYP) metabolites. A human liver microsomal system for the in vitro metabolism of EPA, DHA and AA was optimised in terms of microsomal and PUFA concentration. The system resulted in the metabolism of the positive control, lauric acid, to 12-hydroxy-lauric acid but was unable to metabolise the PUFAs of interest. EPA, DHA and AA reduced cell viability in the colon carcinoma cell lines SW480 and SW620 in the micromolar concentration range (25 – 200 μM). The CYP epoxidation metabolite of EPA, 17, 18-epoxyeicosatetraenoic acid (17, 18-EpETE) resulted in a significant reduction in SW480 cell viability relative to the parent compound at lower concentrations (25 and 50 μM). Annexin V apoptosis analysis revealed that EPA and 17, 18- EpETE did not result in apoptosis in SW480 cells at a concentration of 25 μM and over an incubation period of 24 hours. A significant reduction in reactive oxygen species production was seen in SW480 cells after incubation with 25 μM 17, 18-EpETE for 24 hours. EPA and 17, 18-EpETE were implicated in the reduction of colon cancer metastasis since they were able to reduce SW480 migration and anchorage independent cell growth. These results indicate that the dietary intake of EPA, DHA and AA may be beneficial to one’s health due to the negative effects that these PUFAs had on colon carcinoma. Future studies are needed to confirm these benefits and compare the effects of the PUFAs to their CYP-metabolites.
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- Date Issued: 2013