Chemical archeoceanography:
- Authors: Albarede, Francis , Thibon, Fanny , Blichert-Toft, Janne , Tsikos, Harilaos
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149065 , vital:38801 , https://doi.org/10.1016/j.chemgeo.2020.119625
- Description: Elemental fluxes to the ocean are expected to increase with the surface area of continental exposure to weathering and atmospheric PCO2. The record of phosphorus in sediments, which has no notable source within the ocean, and the radiogenic strontium isotopes in Archean carbonates indicate that, prior to the Great Oxidation Event (GOE), subaerial expanses represented only about 20% of the modern continental surface area, i.e. 7% of the surface of the Earth. Because these simple first-order observations, in contrast to the low oxygen content of the pre-GOE atmosphere, have so far received only little attention in the appraisal of the marine chemistry of the early Earth, a reassessment of the chemistry of the pre-GOE ocean is warranted. Here we discuss some of the geochemical cycles of the Archean world, including protons, alkalinity, electrons, and other electrolytes, and attempt to build a first conceptual framework for Chemical Archeoceanography.
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- Date Issued: 2020
Climate modelling suggests a review of the legal status of Brazilian pepper Schinus terebinthifolia in South Africa is required:
- Authors: Martin, Grant D , Magengelele, Nwabisa L , Paterson, Iain D , Sutton, Guy F
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148606 , vital:38754 , https://doi.org/10.1016/j.sajb.2020.04.019
- Description: Brazilian pepper (Schinus terebinthifolia) is a tree native to subtropical South America that was introduced into South Africa in the early 1900s as an ornamental plant. The tree has since escaped cultivation and has invaded ruderal and pristine habitats along the eastern coast of South Africa. Brazilian Pepper is also one of the most problematic invasive alien plants in Florida, USA. We modelled the climatically suitable area for this species in South Africa using MaxEnt, with five distinct datasets: incorporating both the native and the invaded range of the species, as well as different backgrounds.
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- Date Issued: 2020
Designing and reporting pictogram research: problems, pitfalls and lessons learnt
- Authors: Dowse, Roslind
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/157083 , vital:40085 , https://doi.org/10.1016/j.sapharm.2020.08.013
- Description: Research describing the design, evaluation or use of pictograms for various health-related applications is receiving increasing attention in the literature. However, recent reviews of this body of literature have commented adversely on the overall quality of the research, highlighting problems with the pictogram design process, as well as calling for improvement in both the methodology and reporting of all aspects of designing, developing, modifying, evaluating and applying pictograms in practice. The heterogeneity in study design, as well as in the interventions and outcomes measured, prevents overall conclusions being drawn about the effectiveness of pictograms on comprehension and medicine-taking behaviour such as adherence and self-care. The reporting of such research should provide adequate detail to enable reproducibility and replicability of the research. This article offers guidance in designing and reporting pictogram-based research, highlighting areas that are often problematic or inadequately addressed.
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- Date Issued: 2020
Fabrication of dye-sensitized solar cells based on push-pull asymmetrical substituted zinc and copper phthalocyanines and reduced graphene oxide nanosheet:
- Authors: Chindeka, Francis , Mashazi, Philani N , Britton, Jonathan , Oluwole, David O , Mapukata, Sivuyisiwe , Nyokong, Tebello
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149076 , vital:38802 , https://doi.org/10.1016/j.jphotochem.2020.112612
- Description: Dye sensitized solar cells (DSSCs) were fabricated by using 2(3,5-biscarboxyphenoxy), 9(10), 16(17), 23(24)-tri(tertbutyl) phthalocyaninato Cu (4) and Zn (5) complexes as dyes on the ITO-TiO2 photoanodes containing reduced graphene oxide nanosheets (rGONS) or nitrogen-doped rGONS (NrGONS). The evaluation of the assembled DSSCs revealed that using ITO-TiO2-NrGONS-CuPc photoanode had the highest fill factor (FF) and power conversion efficiency (ɳ) of 69% and 4.36% respectively. These results show that the asymmetrical phthalocyanine complexes (4) and (5) exhibit significant improvement on the performance of the DSSC compared to our previous work on symmetrical carboxylated phthalocyanines with ɳ = 3.19%.
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- Date Issued: 2020
Impact of early pandemic stage mutations on molecular dynamics of SARS-CoV-2 Mpro:
- Authors: Amamuddy, Olivier S , Verkhivker, Gennady M , Tastan Bishop, Özlem
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/162330 , vital:40835 , https://0-doi.org.wam.seals.ac.za/10.1021/acs.jcim.0c00634
- Description: A new coronavirus (SARS-CoV-2) is a global threat to world health and economy. Its dimeric main protease (Mpro), which is required for the proteolytic cleavage of viral precursor proteins, is a good candidate for drug development owing to its conservation and the absence of a human homolog. Improving our understanding of Mpro behavior can accelerate the discovery of effective therapies to reduce mortality. All-atom molecular dynamics (MD) simulations (100 ns) of 50 mutant Mpro dimers obtained from filtered sequences from the GISAID database were analyzed using root-mean-square deviation, root-mean-square fluctuation, Rg, averaged betweenness centrality, and geometry calculations.
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- Date Issued: 2020
Intraspecific mitochondrial gene variation can be as low as that of nuclear rRNA:
- Authors: Matumba, Tshifhiwa G , Oliver, Jody , Barker, Nigel P , McQuaid, Christopher D , Teske, Peter R
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/160401 , vital:40442 , https://doi.org/10.12688/f1000research.23635.2
- Description: Mitochondrial DNA (mtDNA) has long been used to date historical demographic events. The idea that it is useful for molecular dating rests on the premise that its evolution is neutral. Even though this idea has long been challenged, the evidence against clock-like evolution of mtDNA is often ignored. Here, we present a particularly clear and simple example to illustrate the implications of violations of the assumption of selective neutrality.
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- Date Issued: 2020
Lions do not change rivers: complex African savannas preclude top-down forcing by large carnivores
- Authors: Comley, Jessica , Joubert, Christoffel J , Mgqatsa, Nokubonga , Parker, Daniel M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/149215 , vital:38816 , https://doi.org/10.1016/j.jnc.2020.125844
- Description: Trophic cascade theories such as the ‘behaviourally-mediated trophic cascade hypothesis’ (BMTCH), have mainstreamed as ecological tools for conserving biodiversity and restoring ecosystems. The BMTCH relies on indirect negative effects of large carnivores through suppression of mesocarnivore activity and habitat use. Importantly, effects of top carnivores on mesocarnivores varies over time and space, is dependent on the species involved, and local context. In South Africa, there are very few free-ranging carnivores, as populations are often restricted to enclosed reserves. While predator-proof fences reduce human-wildlife conflict, they also influence space use within communities. We used an enclosed reserve with a relatively full complement of carnivores to test the generality of the BMTCH in the African context. Using single-species, multi-season occupancy models we investigated the spatial dynamics of multiple carnivores. We also investigated spatial partitioning by vegetation type and temporal partitioning.
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- Date Issued: 2020
Microplastic leachates induce species-specific trait strengthening in intertidal mussels:
- Authors: Seuront, Laurent , Nicastro, Katy R , McQuaid, Christopher D , Zardi, Gerardo I
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/158200 , vital:40162 , https://0-doi.org.wam.seals.ac.za/10.1002/eap.2222. https://doi.org/10.5061/dryad.905qftthq
- Description: Plastic pollution is ubiquitous with increasing recognition of its direct effects on species’ fitness. Little is known, however, about its more subtle effects, including the influence of plastic pollution on the morphological, functional and behavioural traits of organisms that are central to their ability to withstand disturbances. Among the least obvious but most pernicious forms of plastic-associated pollution are the chemicals that leach from microplastics. Here, we investigate how such leachates influence species’ traits by assessing functional trait compensation across four species of intertidal mussels, through investigations of byssal thread production, movement and aggregation behaviour for mussels held in natural seawater or seawater contaminated by microplastic leachates.
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- Date Issued: 2020
Simultaneous liposomal encapsulation of antibiotics and proteins: co-loading and characterization of rifampicin and Human Serum Albumin in soy-liposomes
- Authors: Bapolisi, Alain M , Nkanga, Christian I , Walker, Roderick B , Krause, Rui W M
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/148617 , vital:38755 , https://doi.org/10.1016/j.jddst.2020.101751
- Description: The recurrent development of resistance to antimicrobial agents threatens the ability for successful treatment of infectious diseases. Hydrophobic antibiotics such as rifampicin (Rif) are particularly affected due to poor bioavailability. On the other hand, proteins play important roles in drug delivery and release. Further, the combination of antimicrobials with therapeutic proteins and their encapsulation in liposomes seems a promising approach for improvement of antimicrobial efficacy. This study aimed to encapsulate Rif simultaneously with a large protein, Human Serum Albumin (HSA) in liposomes made from an inexpensive crude soy lecithin (CSL).
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- Date Issued: 2020
The Effects of Alkaline Pretreatment on Agricultural Biomasses (Corn Cob and Sweet Sorghum Bagasse) and Their Hydrolysis by a Termite-Derived Enzyme Cocktail:
- Authors: Mafa, Mpho S , Malgas, Samkelo , Bhattacharya, Abhishek , Rashamuse, Konanani , Pletschke, Brett I
- Date: 2020
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/160273 , vital:40430 , https://doi.org/10.3390/agronomy10081211
- Description: Sweet sorghum bagasse (SSB) and corncob (CC) have been identified as promising feedstocks for the production of second-generation biofuels and other value-added chemicals. In this study, lime (Ca(OH)2) and NaOH pretreatment efficacy for decreasing recalcitrance from SSB and CC was investigated, and subsequently, the pretreated biomass was subjected to the hydrolytic action of an in-house formulated holocellulolytic enzyme cocktail (HEC-H). Compositional analysis revealed that SSB contained 29.34% lignin, 17.75% cellulose and 16.28% hemicellulose, while CC consisted of 22.51% lignin, 23.58% cellulose and 33.34% hemicellulose. Alkaline pretreatment was more effective in pretreating CC biomass compared to the SSB biomass.
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- Date Issued: 2020