Developing high-fidelity mental models of programming concepts using manipulatives and interactive metaphors
- Authors: Funcke, Matthew
- Date: 2015
- Subjects: Computer programming -- Study and teaching (Higher) , Computer programmers
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4707 , http://hdl.handle.net/10962/d1017929
- Description: It is well established that both learning and teaching programming are difficult tasks. Difficulties often occur due to weak mental models and common misconceptions. This study proposes a method of teaching programming that both encourages high-fidelity mental models and attempts to minimise misconceptions in novice programmers, through the use of metaphors and manipulatives. The elements in ActionWorld with which the students interact are realizations of metaphors. By simple example, a variable has a metaphorical representation as a labelled box that can hold a value. The dissertation develops a set of metaphors which have several core requirements: metaphors should avoid causing misconceptions, they need to be high-fidelity so as to avoid failing when used with a new concept, students must be able to relate to them, and finally, they should be usable across multiple educational media. The learning style that ActionWorld supports is one which requires active participation from the student - the system acts as a foundation upon which students are encouraged to build their mental models. This teaching style is achieved by placing the student in the role of code interpreter, the code they need to interpret will not advance until they have demonstrated its meaning via use of the aforementioned metaphors. ActionWorld was developed using an iterative developmental process that consistently improved upon various aspects of the project through a continual evaluation-enhancement cycle. The primary outputs of this project include a unified set of high-fidelity metaphors, a virtual-machine API for use in similar future projects, and two metaphor-testing games. All of the aforementioned deliverables were tested using multiple quality-evaluation criteria, the results of which were consistently positive. ActionWorld and its constituent components contribute to the wide assortment of methods one might use to teach novice programmers.
- Full Text:
- Date Issued: 2015
- Authors: Funcke, Matthew
- Date: 2015
- Subjects: Computer programming -- Study and teaching (Higher) , Computer programmers
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4707 , http://hdl.handle.net/10962/d1017929
- Description: It is well established that both learning and teaching programming are difficult tasks. Difficulties often occur due to weak mental models and common misconceptions. This study proposes a method of teaching programming that both encourages high-fidelity mental models and attempts to minimise misconceptions in novice programmers, through the use of metaphors and manipulatives. The elements in ActionWorld with which the students interact are realizations of metaphors. By simple example, a variable has a metaphorical representation as a labelled box that can hold a value. The dissertation develops a set of metaphors which have several core requirements: metaphors should avoid causing misconceptions, they need to be high-fidelity so as to avoid failing when used with a new concept, students must be able to relate to them, and finally, they should be usable across multiple educational media. The learning style that ActionWorld supports is one which requires active participation from the student - the system acts as a foundation upon which students are encouraged to build their mental models. This teaching style is achieved by placing the student in the role of code interpreter, the code they need to interpret will not advance until they have demonstrated its meaning via use of the aforementioned metaphors. ActionWorld was developed using an iterative developmental process that consistently improved upon various aspects of the project through a continual evaluation-enhancement cycle. The primary outputs of this project include a unified set of high-fidelity metaphors, a virtual-machine API for use in similar future projects, and two metaphor-testing games. All of the aforementioned deliverables were tested using multiple quality-evaluation criteria, the results of which were consistently positive. ActionWorld and its constituent components contribute to the wide assortment of methods one might use to teach novice programmers.
- Full Text:
- Date Issued: 2015
A geochemical and morphological investigation of placer gold grains from the southern Seward Peninsula, Alaska : implications for source and transport mechanisms
- Gauntlett, Ernest John Herbert
- Authors: Gauntlett, Ernest John Herbert
- Date: 2015
- Subjects: Placer deposits -- Alaska -- Seward Peninsula , Gold alloys , Gold mines and mining -- Alaska -- Seward Peninsula , Geochemical surveys -- Alaska -- Seward Peninsula , Trace elements -- Alaska -- Seward Peninsula , Drift -- Alaska -- Seward Peninsula , Gold -- Standards of fineness
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5085 , http://hdl.handle.net/10962/d1018202
- Description: [Partial abstract]: This study presents the first detailed geochemical and morphological characterisation of gold grains from the southern Seward Peninsula, Alaska, a region with significant historical and on-going placer gold mining. Quantitative Au, Ag, Hg, and Cu data are presented for gold grains from eleven sites. Additionally, quantitative Te, W, As, and Sb trace element data are presented for gold grains from ten of the eleven sites. Although it is acknowledged that quantitative trace element analysis of gold grains is a relatively new endeavour, the limited trace element data obtained in this study suggest that trace element analysis could be useful for characterising gold sources on the southern Seward Peninsula. Major and minor element geochemical profiling is sufficient at differentiating between sites from regional provenance systems but insufficient at differentiating between sites within a single system. Differentiating among sites within a single system will likely require microchemical analysis of mineral inclusions and analysis of trace element signatures.
- Full Text:
- Date Issued: 2015
- Authors: Gauntlett, Ernest John Herbert
- Date: 2015
- Subjects: Placer deposits -- Alaska -- Seward Peninsula , Gold alloys , Gold mines and mining -- Alaska -- Seward Peninsula , Geochemical surveys -- Alaska -- Seward Peninsula , Trace elements -- Alaska -- Seward Peninsula , Drift -- Alaska -- Seward Peninsula , Gold -- Standards of fineness
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5085 , http://hdl.handle.net/10962/d1018202
- Description: [Partial abstract]: This study presents the first detailed geochemical and morphological characterisation of gold grains from the southern Seward Peninsula, Alaska, a region with significant historical and on-going placer gold mining. Quantitative Au, Ag, Hg, and Cu data are presented for gold grains from eleven sites. Additionally, quantitative Te, W, As, and Sb trace element data are presented for gold grains from ten of the eleven sites. Although it is acknowledged that quantitative trace element analysis of gold grains is a relatively new endeavour, the limited trace element data obtained in this study suggest that trace element analysis could be useful for characterising gold sources on the southern Seward Peninsula. Major and minor element geochemical profiling is sufficient at differentiating between sites from regional provenance systems but insufficient at differentiating between sites within a single system. Differentiating among sites within a single system will likely require microchemical analysis of mineral inclusions and analysis of trace element signatures.
- Full Text:
- Date Issued: 2015
Towards an evaluation and protection strategy for critical infrastructure
- Authors: Gottschalk, Jason Howard
- Date: 2015
- Subjects: Computer crimes -- Prevention , Computer networks -- Security measures , Computer crimes -- Law and legislation -- South Africa , Public works -- Security measures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4721 , http://hdl.handle.net/10962/d1018793
- Description: Critical Infrastructure is often overlooked from an Information Security perspective as being of high importance to protect which may result in Critical Infrastructure being at risk to Cyber related attacks with potential dire consequences. Furthermore, what is considered Critical Infrastructure is often a complex discussion, with varying opinions across audiences. Traditional Critical Infrastructure included power stations, water, sewage pump stations, gas pipe lines, power grids and a new entrant, the “internet of things”. This list is not complete and a constant challenge exists in identifying Critical Infrastructure and its interdependencies. The purpose of this research is to highlight the importance of protecting Critical Infrastructure as well as proposing a high level framework aiding in the identification and securing of Critical Infrastructure. To achieve this, key case studies involving Cyber crime and Cyber warfare, as well as the identification of attack vectors and impact on against Critical Infrastructure (as applicable to Critical Infrastructure where possible), were identified and discussed. Furthermore industry related material was researched as to identify key controls that would aid in protecting Critical Infrastructure. The identification of initiatives that countries were pursuing, that would aid in the protection of Critical Infrastructure, were identified and discussed. Research was conducted into the various standards, frameworks and methodologies available to aid in the identification, remediation and ultimately the protection of Critical Infrastructure. A key output of the research was the development of a hybrid approach to identifying Critical Infrastructure, associated vulnerabilities and an approach for remediation with specific metrics (based on the research performed). The conclusion based on the research is that there is often a need and a requirement to identify and protect Critical Infrastructure however this is usually initiated or driven by non-owners of Critical Infrastructure (Governments, governing bodies, standards bodies and security consultants). Furthermore where there are active initiative by owners very often the suggested approaches are very high level in nature with little direct guidance available for very immature environments.
- Full Text:
- Date Issued: 2015
- Authors: Gottschalk, Jason Howard
- Date: 2015
- Subjects: Computer crimes -- Prevention , Computer networks -- Security measures , Computer crimes -- Law and legislation -- South Africa , Public works -- Security measures
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4721 , http://hdl.handle.net/10962/d1018793
- Description: Critical Infrastructure is often overlooked from an Information Security perspective as being of high importance to protect which may result in Critical Infrastructure being at risk to Cyber related attacks with potential dire consequences. Furthermore, what is considered Critical Infrastructure is often a complex discussion, with varying opinions across audiences. Traditional Critical Infrastructure included power stations, water, sewage pump stations, gas pipe lines, power grids and a new entrant, the “internet of things”. This list is not complete and a constant challenge exists in identifying Critical Infrastructure and its interdependencies. The purpose of this research is to highlight the importance of protecting Critical Infrastructure as well as proposing a high level framework aiding in the identification and securing of Critical Infrastructure. To achieve this, key case studies involving Cyber crime and Cyber warfare, as well as the identification of attack vectors and impact on against Critical Infrastructure (as applicable to Critical Infrastructure where possible), were identified and discussed. Furthermore industry related material was researched as to identify key controls that would aid in protecting Critical Infrastructure. The identification of initiatives that countries were pursuing, that would aid in the protection of Critical Infrastructure, were identified and discussed. Research was conducted into the various standards, frameworks and methodologies available to aid in the identification, remediation and ultimately the protection of Critical Infrastructure. A key output of the research was the development of a hybrid approach to identifying Critical Infrastructure, associated vulnerabilities and an approach for remediation with specific metrics (based on the research performed). The conclusion based on the research is that there is often a need and a requirement to identify and protect Critical Infrastructure however this is usually initiated or driven by non-owners of Critical Infrastructure (Governments, governing bodies, standards bodies and security consultants). Furthermore where there are active initiative by owners very often the suggested approaches are very high level in nature with little direct guidance available for very immature environments.
- Full Text:
- Date Issued: 2015
Building an E-health system for health awareness campaigns in poor areas
- Authors: Gremu, Chikumbutso David
- Date: 2015
- Subjects: National health services -- South Africa , Medical informatics , Public health -- Information services
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4708 , http://hdl.handle.net/10962/d1017930
- Description: Appropriate e-services as well as revenue generation capabilities are key to the deployment and the sustainability for ICT installations in poor areas, particularly common in developing country. The area of e-Health is a promising area for e-services that are both important to the population in those areas and potentially of direct interest to National Health Organizations, which already spend money for Health campaigns there. This thesis focuses on the design, implementation, and full functional testing of HealthAware, an application that allows health organization to set up targeted awareness campaigns for poor areas. Requirements for such application are very specific, starting from the fact that the preparation of the campaign and its execution/consumption happen in two different environments from a technological and social point of view. Part of the research work done for this thesis was to make the above requirements explicit and then use them in the design. This phase of the research was facilitated by the fact that the thesis' work was executed within the context of the Siyakhula Living Lab (SLL; www.siyakhulaLL.org), which has accumulated multi-year experience of ICT deployment in such areas. As a result of the found requirements, HealthAware comprises two components, which are web-based, Java applications that run in a peer-to-peer fashion. The first component, the Dashboard, is used to create, manage, and publish information for conducting awareness campaigns or surveys. The second component, HealthMessenger, facilitates users' access to the campaigns or surveys that were created using the Dashboard. The HealthMessenger was designed to be hosted on TeleWeaver while the Dashboard is hosted independently of TeleWeaver and simply communicates with the HealthMessenger through webservices. TeleWeaver is an application integration platform developed within the SLL to host software applications for poor areas. Using a core service of TeleWeaver, the profile service, where all the users' defining elements are contained, campaigns and surveys can be easily and effectively targeted, for example to match specific demographics or geographic locations. Revenue generation is attained via the logging of the interactions of the target users in the communities with the applications in TeleWeaver, from which billing data is generated according to the specific contractual agreements with the National Health Organization. From a general point of view, HealthAware contributes to the concrete realizations of a bidirectional access channel between Health Organizations and users in poor communities, which not only allows the communication of appropriate content in both directions, but get 'monetized' and in so doing becomes a revenue generator.
- Full Text:
- Date Issued: 2015
- Authors: Gremu, Chikumbutso David
- Date: 2015
- Subjects: National health services -- South Africa , Medical informatics , Public health -- Information services
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4708 , http://hdl.handle.net/10962/d1017930
- Description: Appropriate e-services as well as revenue generation capabilities are key to the deployment and the sustainability for ICT installations in poor areas, particularly common in developing country. The area of e-Health is a promising area for e-services that are both important to the population in those areas and potentially of direct interest to National Health Organizations, which already spend money for Health campaigns there. This thesis focuses on the design, implementation, and full functional testing of HealthAware, an application that allows health organization to set up targeted awareness campaigns for poor areas. Requirements for such application are very specific, starting from the fact that the preparation of the campaign and its execution/consumption happen in two different environments from a technological and social point of view. Part of the research work done for this thesis was to make the above requirements explicit and then use them in the design. This phase of the research was facilitated by the fact that the thesis' work was executed within the context of the Siyakhula Living Lab (SLL; www.siyakhulaLL.org), which has accumulated multi-year experience of ICT deployment in such areas. As a result of the found requirements, HealthAware comprises two components, which are web-based, Java applications that run in a peer-to-peer fashion. The first component, the Dashboard, is used to create, manage, and publish information for conducting awareness campaigns or surveys. The second component, HealthMessenger, facilitates users' access to the campaigns or surveys that were created using the Dashboard. The HealthMessenger was designed to be hosted on TeleWeaver while the Dashboard is hosted independently of TeleWeaver and simply communicates with the HealthMessenger through webservices. TeleWeaver is an application integration platform developed within the SLL to host software applications for poor areas. Using a core service of TeleWeaver, the profile service, where all the users' defining elements are contained, campaigns and surveys can be easily and effectively targeted, for example to match specific demographics or geographic locations. Revenue generation is attained via the logging of the interactions of the target users in the communities with the applications in TeleWeaver, from which billing data is generated according to the specific contractual agreements with the National Health Organization. From a general point of view, HealthAware contributes to the concrete realizations of a bidirectional access channel between Health Organizations and users in poor communities, which not only allows the communication of appropriate content in both directions, but get 'monetized' and in so doing becomes a revenue generator.
- Full Text:
- Date Issued: 2015
Woody encroachment and plant-root soil interactions in a semi-arid savanna
- Authors: Gusha, Bukho
- Date: 2015
- Subjects: Pastures -- Management Weeds Invasive plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12139 , vital:39174
- Description: Savannas occupy 1/8 of the global land surface, support a large proportion of the world’s human population and the majority of its rangeland and livestock. Woody encroachment has been reported as the major challenge in these landscapes. This study describes the differences between three contrasting tree density classes in a semi- arid savanna with the view to developing an improved understanding of woody encroachment which is prevalent in this region. The study attempted to determine if there was a relationship between lateral root distributions at varying soil depths with increasing levels of woody encroachment, and to compare species composition and soil water profiles in these rangelands. Three homogeneous vegetation units, namely: sparsely encroached (HVU1), grassland (HVU2) and Albany thicket (HVU3) were identified for the study sites. A Trench method was used determine root biomass and a step point method was used to determine herbaceous species composition in all the HVUs. The results showed that more Decreaser species (especially Themeda triandra) were recorded in a sparsely encroached site (HVU1) and grassland site (HVU2), while Cynodon dactylon was mostly recorded in the thicket site (HVU3). Acacia karroo was mostly recorded in HVU1 while in HVU2 other woody species such as Coddia rudis and Grewia occidentalis were also recoded. HVU3 had the poorest basal cover (point to tuft distance) (22.60 cm) while HVU1 (9.93 cm) and HVU2 (7.73 cm) had moderate basal cover. The herbaceous standing biomass was significantly different across the HVUs. HVU3 was higher (1206.15 kg ha-1) than HVU1 (942.43 kg ha-1) and HVU2 (677.10 kg ha-1). The soil moisture content was significantly different between the HVUs, but was not significantly different between the depths (p< 0.05). High soil moisture content was recorded in HVU3 compared to other HVUs. The results of Analysis of Variance (ANOVA) showed that soil depth and the type of homogenous vegetation unit (HVU) had significant effects (p<0.01) on root biomass. The pair wise t-test showed that there were no significant difference in root biomass between sparsely encroached (HVU1) and grassland (HVU2) sites (p>0.05), but there were significant differences in root biomass between grassland (HVU2) and thicket (HVU3) site (p<0.05). The mean for total root biomass found in the study was 2.66 kg m-2. In all the trenches most of the root biomass was found in depth 1 (0-30 cm) which was 2.43 kg m-2followed by 1.32 kg m-2 in depth 2 (30-60 cm) and 0.49 kg m-2 in depth 3 (60-90 cm). According to the results on species composition, herbaceous biomass, basal cover, soil moisture content and the root biomass, Kwezana communal rangeland has a potential of running a sustainable livestock production enterprise if proper management practices can be implemented. To improve the rangelands of Kwezana communal rangelands, management such as proper resting, burning, proper stocking rates and physically clearing of bushes should be considered.
- Full Text:
- Date Issued: 2015
- Authors: Gusha, Bukho
- Date: 2015
- Subjects: Pastures -- Management Weeds Invasive plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12139 , vital:39174
- Description: Savannas occupy 1/8 of the global land surface, support a large proportion of the world’s human population and the majority of its rangeland and livestock. Woody encroachment has been reported as the major challenge in these landscapes. This study describes the differences between three contrasting tree density classes in a semi- arid savanna with the view to developing an improved understanding of woody encroachment which is prevalent in this region. The study attempted to determine if there was a relationship between lateral root distributions at varying soil depths with increasing levels of woody encroachment, and to compare species composition and soil water profiles in these rangelands. Three homogeneous vegetation units, namely: sparsely encroached (HVU1), grassland (HVU2) and Albany thicket (HVU3) were identified for the study sites. A Trench method was used determine root biomass and a step point method was used to determine herbaceous species composition in all the HVUs. The results showed that more Decreaser species (especially Themeda triandra) were recorded in a sparsely encroached site (HVU1) and grassland site (HVU2), while Cynodon dactylon was mostly recorded in the thicket site (HVU3). Acacia karroo was mostly recorded in HVU1 while in HVU2 other woody species such as Coddia rudis and Grewia occidentalis were also recoded. HVU3 had the poorest basal cover (point to tuft distance) (22.60 cm) while HVU1 (9.93 cm) and HVU2 (7.73 cm) had moderate basal cover. The herbaceous standing biomass was significantly different across the HVUs. HVU3 was higher (1206.15 kg ha-1) than HVU1 (942.43 kg ha-1) and HVU2 (677.10 kg ha-1). The soil moisture content was significantly different between the HVUs, but was not significantly different between the depths (p< 0.05). High soil moisture content was recorded in HVU3 compared to other HVUs. The results of Analysis of Variance (ANOVA) showed that soil depth and the type of homogenous vegetation unit (HVU) had significant effects (p<0.01) on root biomass. The pair wise t-test showed that there were no significant difference in root biomass between sparsely encroached (HVU1) and grassland (HVU2) sites (p>0.05), but there were significant differences in root biomass between grassland (HVU2) and thicket (HVU3) site (p<0.05). The mean for total root biomass found in the study was 2.66 kg m-2. In all the trenches most of the root biomass was found in depth 1 (0-30 cm) which was 2.43 kg m-2followed by 1.32 kg m-2 in depth 2 (30-60 cm) and 0.49 kg m-2 in depth 3 (60-90 cm). According to the results on species composition, herbaceous biomass, basal cover, soil moisture content and the root biomass, Kwezana communal rangeland has a potential of running a sustainable livestock production enterprise if proper management practices can be implemented. To improve the rangelands of Kwezana communal rangelands, management such as proper resting, burning, proper stocking rates and physically clearing of bushes should be considered.
- Full Text:
- Date Issued: 2015
Woody encroachment and plant-root soil interactions in a semi-arid savanna
- Authors: Gusha, Bukho
- Date: 2015
- Subjects: Pastures -- Management Weeds Invasive plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12053 , vital:39131
- Description: Savannas occupy 1/8 of the global land surface, support a large proportion of the world’s human population and the majority of its rangeland and livestock. Woody encroachment has been reported as the major challenge in these landscapes. This study describes the differences between three contrasting tree density classes in a semi- arid savanna with the view to developing an improved understanding of woody encroachment which is prevalent in this region. The study attempted to determine if there was a relationship between lateral root distributions at varying soil depths with increasing levels of woody encroachment, and to compare species composition and soil water profiles in these rangelands. Three homogeneous vegetation units, namely: sparsely encroached (HVU1), grassland (HVU2) and Albany thicket (HVU3) were identified for the study sites. A Trench method was used determine root biomass and a step point method was used to determine herbaceousspecies composition in all the HVUs. The results showed that more Decreaser species (especially Themeda triandra) were recorded in a sparsely encroached site (HVU1) and grassland site (HVU2), while Cynodon dactylon was mostly recorded in the thicket site (HVU3). Acacia karroo was mostly recorded in HVU1 while in HVU2 other woody species such as Coddia rudis and Grewia occidentalis were also recoded. HVU3 had the poorest basal cover (point to tuft distance) (22.60 cm) while HVU1 (9.93 cm) and HVU2 (7.73 cm) had moderate basal cover. The herbaceous standing biomass was significantly different across the HVUs. HVU3 was higher (1206.15 kg ha-1) than HVU1 (942.43 kg ha-1) and HVU2 (677.10 kg ha-1). The soil moisture content was significantly different between the HVUs, but was not significantly different between the depths (p< 0.05). High soil moisture content was recorded in HVU3 compared to other HVUs. The results of Analysis of Variance (ANOVA) showed that soil depth and the type of homogenous vegetation unit (HVU) had significant effects (p<0.01) on root biomass. The pair wise t-test showed that there were no significant difference in root biomass between sparsely encroached (HVU1) and grassland (HVU2) sites (p>0.05), but there were significant differences in root biomass between grassland (HVU2) and thicket (HVU3) site (p<0.05). The mean for total root biomass found in the study was 2.66 kg m-2. In all the trenches most of the root biomass was found in depth 1 (0-30 cm) which was 2.43 kg m-2followed by 1.32 kg m-2 in depth 2 (30-60 cm) and 0.49 kg m-2 in depth 3 (60-90 cm). According to the results on species composition, herbaceous biomass, basal cover, soil moisture content and the root biomass, Kwezana communal rangeland has a potential of running a sustainable livestock production enterprise if proper management practices can be implemented. To improve the rangelands of Kwezana communal rangelands management such as proper resting, burning, proper stocking rates and physically clearing of bushes should be considered.
- Full Text:
- Date Issued: 2015
- Authors: Gusha, Bukho
- Date: 2015
- Subjects: Pastures -- Management Weeds Invasive plants
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10353/12053 , vital:39131
- Description: Savannas occupy 1/8 of the global land surface, support a large proportion of the world’s human population and the majority of its rangeland and livestock. Woody encroachment has been reported as the major challenge in these landscapes. This study describes the differences between three contrasting tree density classes in a semi- arid savanna with the view to developing an improved understanding of woody encroachment which is prevalent in this region. The study attempted to determine if there was a relationship between lateral root distributions at varying soil depths with increasing levels of woody encroachment, and to compare species composition and soil water profiles in these rangelands. Three homogeneous vegetation units, namely: sparsely encroached (HVU1), grassland (HVU2) and Albany thicket (HVU3) were identified for the study sites. A Trench method was used determine root biomass and a step point method was used to determine herbaceousspecies composition in all the HVUs. The results showed that more Decreaser species (especially Themeda triandra) were recorded in a sparsely encroached site (HVU1) and grassland site (HVU2), while Cynodon dactylon was mostly recorded in the thicket site (HVU3). Acacia karroo was mostly recorded in HVU1 while in HVU2 other woody species such as Coddia rudis and Grewia occidentalis were also recoded. HVU3 had the poorest basal cover (point to tuft distance) (22.60 cm) while HVU1 (9.93 cm) and HVU2 (7.73 cm) had moderate basal cover. The herbaceous standing biomass was significantly different across the HVUs. HVU3 was higher (1206.15 kg ha-1) than HVU1 (942.43 kg ha-1) and HVU2 (677.10 kg ha-1). The soil moisture content was significantly different between the HVUs, but was not significantly different between the depths (p< 0.05). High soil moisture content was recorded in HVU3 compared to other HVUs. The results of Analysis of Variance (ANOVA) showed that soil depth and the type of homogenous vegetation unit (HVU) had significant effects (p<0.01) on root biomass. The pair wise t-test showed that there were no significant difference in root biomass between sparsely encroached (HVU1) and grassland (HVU2) sites (p>0.05), but there were significant differences in root biomass between grassland (HVU2) and thicket (HVU3) site (p<0.05). The mean for total root biomass found in the study was 2.66 kg m-2. In all the trenches most of the root biomass was found in depth 1 (0-30 cm) which was 2.43 kg m-2followed by 1.32 kg m-2 in depth 2 (30-60 cm) and 0.49 kg m-2 in depth 3 (60-90 cm). According to the results on species composition, herbaceous biomass, basal cover, soil moisture content and the root biomass, Kwezana communal rangeland has a potential of running a sustainable livestock production enterprise if proper management practices can be implemented. To improve the rangelands of Kwezana communal rangelands management such as proper resting, burning, proper stocking rates and physically clearing of bushes should be considered.
- Full Text:
- Date Issued: 2015
An analysis of malware evasion techniques against modern AV engines
- Authors: Haffejee, Jameel
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20979 , http://hdl.handle.net/10962/5821
- Description: This research empirically tested the response of antivirus applications to binaries that use virus-like evasion techniques. In order to achieve this, a number of binaries are processed using a number of evasion methods and are then deployed against several antivirus engines. The research also documents the process of setting up an environment for testing antivirus engines, including building the evasion techniques used in the tests. The results of the empirical tests illustrate that an attacker can evade multiple antivirus engines without much effort using well-known evasion techniques. Furthermore, some antivirus engines may respond to the occurrence of an evasion technique instead of the presence of any malicious code. In practical terms, this shows that while antivirus applications are useful for protecting against known threats, their effectiveness against unknown or modified threats is limited.
- Full Text:
- Date Issued: 2015
- Authors: Haffejee, Jameel
- Date: 2015
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:20979 , http://hdl.handle.net/10962/5821
- Description: This research empirically tested the response of antivirus applications to binaries that use virus-like evasion techniques. In order to achieve this, a number of binaries are processed using a number of evasion methods and are then deployed against several antivirus engines. The research also documents the process of setting up an environment for testing antivirus engines, including building the evasion techniques used in the tests. The results of the empirical tests illustrate that an attacker can evade multiple antivirus engines without much effort using well-known evasion techniques. Furthermore, some antivirus engines may respond to the occurrence of an evasion technique instead of the presence of any malicious code. In practical terms, this shows that while antivirus applications are useful for protecting against known threats, their effectiveness against unknown or modified threats is limited.
- Full Text:
- Date Issued: 2015
What limits an invasive biotic and abiotic effects on the distribution of the invasive mussel mytilus galloprovincialis on the South African coastline
- Authors: Hall, Madison
- Date: 2015
- Subjects: Perna , Mytilus galloprovincialis , Mussels -- South Africa , Introduced organisms -- Environmental aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5927 , http://hdl.handle.net/10962/d1017805
- Full Text:
- Date Issued: 2015
- Authors: Hall, Madison
- Date: 2015
- Subjects: Perna , Mytilus galloprovincialis , Mussels -- South Africa , Introduced organisms -- Environmental aspects -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5927 , http://hdl.handle.net/10962/d1017805
- Full Text:
- Date Issued: 2015
The anti-ageing potential of rooibos: preserving preadipocyte funtion
- Authors: Hattingh, Anna C
- Date: 2015
- Subjects: Natural products , Aging -- Prevention , Cosmetics industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/7804 , vital:24288
- Description: Treatments with natural products rich in anti-oxidants have attracted remarkable interest in the cosmetic and pharmaceutical industry to combat oxidative stress and reverse the effects of ageing. Rooibos (Aspalathus linearis) is a South African fynbos plant, well-known for its strong anti-oxidant capacity and use in many cosmetic products. However, little published research exists on its potential as an anti-ageing treatment. The anti-ageing properties of fermented and green rooibos were investigated using an in vitro cell culture model designed to evaluate the involvement of mitochondrial dysfunction in the age related decline in preadipocyte function. Mitochondrial DNA (mtDNA) deficient preadipocytes, ρ0 3T3-L1preadipocytes, were generated following continuous long-term exposure to sub lethal concentrations of ethidium bromide (EtBr). Depletion of the mtDNA resulted in a significantly reduced mitochondrial membrane potential, rate of proliferation in culture, as well as an increased glucose utilization and lactate production. Treatment with the green rooibos (100 μg/mL) stimulated cell growth rates for both the wildtype and mutant cell lines. MtDNA depleted cells showed arrest in the G1 phase (48.8 ± 3.34%) compared to wildtype cells (44.6 ± 1.38%), which was significantly attenuated after treatment with green rooibos for mutant (42.0 ± 0.83%) and wildtype (36.5 ± 5.80%) treated cells. The results obtained for glucose utilization and lactate production, indicated a significant increase in glucose utilization along with a concomitant increase in lactate production after treatment with both green and fermented rooibos for wildtype and mutant cell lines. A significant improvement in mitochondrial membrane potential was also later observed after treatment with green and fermented rooibos on both the wildtype and mutant cell lines. The results obtained indicate that rooibos extracts, particularly the green rooibos, exhibit effects which preserve the functional capacity of preadipocytes exposed to ageing related insults, and indicate that rooibos could cause a metabolic shift in cells redirecting carbon flow away from mitochondrial metabolism, and towards lactate production and consequently, cells become resistant to mitochondrial dysfunction.
- Full Text:
- Date Issued: 2015
- Authors: Hattingh, Anna C
- Date: 2015
- Subjects: Natural products , Aging -- Prevention , Cosmetics industry
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/7804 , vital:24288
- Description: Treatments with natural products rich in anti-oxidants have attracted remarkable interest in the cosmetic and pharmaceutical industry to combat oxidative stress and reverse the effects of ageing. Rooibos (Aspalathus linearis) is a South African fynbos plant, well-known for its strong anti-oxidant capacity and use in many cosmetic products. However, little published research exists on its potential as an anti-ageing treatment. The anti-ageing properties of fermented and green rooibos were investigated using an in vitro cell culture model designed to evaluate the involvement of mitochondrial dysfunction in the age related decline in preadipocyte function. Mitochondrial DNA (mtDNA) deficient preadipocytes, ρ0 3T3-L1preadipocytes, were generated following continuous long-term exposure to sub lethal concentrations of ethidium bromide (EtBr). Depletion of the mtDNA resulted in a significantly reduced mitochondrial membrane potential, rate of proliferation in culture, as well as an increased glucose utilization and lactate production. Treatment with the green rooibos (100 μg/mL) stimulated cell growth rates for both the wildtype and mutant cell lines. MtDNA depleted cells showed arrest in the G1 phase (48.8 ± 3.34%) compared to wildtype cells (44.6 ± 1.38%), which was significantly attenuated after treatment with green rooibos for mutant (42.0 ± 0.83%) and wildtype (36.5 ± 5.80%) treated cells. The results obtained for glucose utilization and lactate production, indicated a significant increase in glucose utilization along with a concomitant increase in lactate production after treatment with both green and fermented rooibos for wildtype and mutant cell lines. A significant improvement in mitochondrial membrane potential was also later observed after treatment with green and fermented rooibos on both the wildtype and mutant cell lines. The results obtained indicate that rooibos extracts, particularly the green rooibos, exhibit effects which preserve the functional capacity of preadipocytes exposed to ageing related insults, and indicate that rooibos could cause a metabolic shift in cells redirecting carbon flow away from mitochondrial metabolism, and towards lactate production and consequently, cells become resistant to mitochondrial dysfunction.
- Full Text:
- Date Issued: 2015
Towards large scale software based network routing simulation
- Authors: Herbert, Alan
- Date: 2015
- Subjects: Routers (Computer networks) , Computer software , Linux
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4709 , http://hdl.handle.net/10962/d1017931
- Description: Software based routing simulators suffer from large simulation host requirements and are prone to slow downs because of resource limitations, as well as context switching due to user space to kernel space requests. Furthermore, hardware based simulations do not scale with the passing of time as their available resources are set at the time of manufacture. This research aims to provide a software based, scalable solution to network simulation. It aims to achieve this by a Linux kernel-based solution, through insertion of a custom kernel module. This will reduce the number of context switches by eliminating the user space context requirement, and serve to be highly compatible with any host that can run the Linux kernel. Through careful consideration in data structure choice and software component design, this routing simulator achieved results of over 7 Gbps of throughput over multiple simulated node hops on consumer hardware. Alongside this throughput, this routing simulator also brings to light scalability and the ability to instantiate and simulate networks in excess of 1 million routing nodes within 1 GB of system memory
- Full Text:
- Date Issued: 2015
- Authors: Herbert, Alan
- Date: 2015
- Subjects: Routers (Computer networks) , Computer software , Linux
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4709 , http://hdl.handle.net/10962/d1017931
- Description: Software based routing simulators suffer from large simulation host requirements and are prone to slow downs because of resource limitations, as well as context switching due to user space to kernel space requests. Furthermore, hardware based simulations do not scale with the passing of time as their available resources are set at the time of manufacture. This research aims to provide a software based, scalable solution to network simulation. It aims to achieve this by a Linux kernel-based solution, through insertion of a custom kernel module. This will reduce the number of context switches by eliminating the user space context requirement, and serve to be highly compatible with any host that can run the Linux kernel. Through careful consideration in data structure choice and software component design, this routing simulator achieved results of over 7 Gbps of throughput over multiple simulated node hops on consumer hardware. Alongside this throughput, this routing simulator also brings to light scalability and the ability to instantiate and simulate networks in excess of 1 million routing nodes within 1 GB of system memory
- Full Text:
- Date Issued: 2015
Comparison of protein binding microarray derived and ChIP-seq derived transcription factor binding DNA motifs
- Hlatshwayo, Nkosikhona Rejoyce
- Authors: Hlatshwayo, Nkosikhona Rejoyce
- Date: 2015
- Subjects: Protein binding , DNA , DNA microarrays , Transcription factors , DNA-protein interactions , Gene regulatory networks
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4146 , http://hdl.handle.net/10962/d1017907
- Description: Transcription factors (TFs) are biologically important proteins that interact with transcription machinery and bind DNA regulatory sequences to regulate gene expression by modulating the synthesis of the messenger RNA. The regulatory sequences comprise of short conserved regions of a specific length called motifs . TFs have very diverse roles in different cells and play a very significant role in development. TFs have been associated with carcinogenesis in various tissue types, as well as developmental and hormone response disorders. They may be responsible for the regulation of oncogenes and can be oncogenic. Consequently, understanding TF binding and knowing the motifs to which they bind is worthy of attention and research focus. Various projects have made the study of TF binding their main focus; nevertheless, much about TF binding remains confounding. Chromatin immunoprecipitation in conjunction with deep sequencing (ChIP-seq) techniques are a popular method used to investigate DNA-TF interactions in vivo. This procedure is followed by motif discovery and motif enrichment analysis using relevant tools. Protein Binding Microarrays (PBMs) are an in vitro method for investigating DNA-TF interactions. We use a motif enrichment analysis tools (CentriMo and AME) and an empirical quality assessment tool (Area under the ROC curve) to investigate which method yields motifs that are a true representation of in vivo binding. Motif enrichment analysis: On average, ChIP-seq derived motifs from the JASPAR Core database outperformed PBM derived ones from the UniPROBE mouse database. However, the performance of motifs derived using these two methods is not much different from each other when using CentriMo and AME. The E-values from Motif enrichment analysis were not too different from each other or 0. CentriMo showed that in 35 cases JASPAR Core ChIP-seq derived motifs outperformed UniPROBE mouse PBM derived motifs, while it was only in 11 cases that PBM derived motifs outperformed ChIP-seq derived motifs. AME showed that in 18 cases JASPAR Core ChIP-seq derived motifs did better, while only it was only in 3 cases that UniPROBE motifs outperformed ChIP-seq derived motifs. We could not distinguish the performance in 25 cases. Empirical quality assessment: Area under the ROC curve values computations followed by a two-sided t-test showed that there is no significant difference in the average performances of the motifs from the two databases (with 95% confidence, mean of differences=0.0088125 p-value= 0.4874, DF=47) .
- Full Text:
- Date Issued: 2015
- Authors: Hlatshwayo, Nkosikhona Rejoyce
- Date: 2015
- Subjects: Protein binding , DNA , DNA microarrays , Transcription factors , DNA-protein interactions , Gene regulatory networks
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4146 , http://hdl.handle.net/10962/d1017907
- Description: Transcription factors (TFs) are biologically important proteins that interact with transcription machinery and bind DNA regulatory sequences to regulate gene expression by modulating the synthesis of the messenger RNA. The regulatory sequences comprise of short conserved regions of a specific length called motifs . TFs have very diverse roles in different cells and play a very significant role in development. TFs have been associated with carcinogenesis in various tissue types, as well as developmental and hormone response disorders. They may be responsible for the regulation of oncogenes and can be oncogenic. Consequently, understanding TF binding and knowing the motifs to which they bind is worthy of attention and research focus. Various projects have made the study of TF binding their main focus; nevertheless, much about TF binding remains confounding. Chromatin immunoprecipitation in conjunction with deep sequencing (ChIP-seq) techniques are a popular method used to investigate DNA-TF interactions in vivo. This procedure is followed by motif discovery and motif enrichment analysis using relevant tools. Protein Binding Microarrays (PBMs) are an in vitro method for investigating DNA-TF interactions. We use a motif enrichment analysis tools (CentriMo and AME) and an empirical quality assessment tool (Area under the ROC curve) to investigate which method yields motifs that are a true representation of in vivo binding. Motif enrichment analysis: On average, ChIP-seq derived motifs from the JASPAR Core database outperformed PBM derived ones from the UniPROBE mouse database. However, the performance of motifs derived using these two methods is not much different from each other when using CentriMo and AME. The E-values from Motif enrichment analysis were not too different from each other or 0. CentriMo showed that in 35 cases JASPAR Core ChIP-seq derived motifs outperformed UniPROBE mouse PBM derived motifs, while it was only in 11 cases that PBM derived motifs outperformed ChIP-seq derived motifs. AME showed that in 18 cases JASPAR Core ChIP-seq derived motifs did better, while only it was only in 3 cases that UniPROBE motifs outperformed ChIP-seq derived motifs. We could not distinguish the performance in 25 cases. Empirical quality assessment: Area under the ROC curve values computations followed by a two-sided t-test showed that there is no significant difference in the average performances of the motifs from the two databases (with 95% confidence, mean of differences=0.0088125 p-value= 0.4874, DF=47) .
- Full Text:
- Date Issued: 2015
Formulation and process optimisation of ethionamide 250 MGtablets using quality by design principles
- Authors: Isaacs, Nasreen
- Date: 2015
- Subjects: Pharmaceutical chemistry , Drugs -- Design , Pharmaceutical technology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/3979 , vital:20497
- Description: The traditional approach of Quality by Testing (QbT) limits the assurance of product quality to in-process and post-production testing. To overcome these limitations, a more proactive and systematic means to product development and optimisation is required. Quality by Design (QbD) is an example of such an approach which focuses on understanding the product and its manufacturing process and emphasises that quality should be built into the product and not merely tested. The study aims to optimise ethionamide tablets, an immediate release oral solid dosage form using QbD.
- Full Text:
- Date Issued: 2015
Formulation and process optimisation of ethionamide 250 MGtablets using quality by design principles
- Authors: Isaacs, Nasreen
- Date: 2015
- Subjects: Pharmaceutical chemistry , Drugs -- Design , Pharmaceutical technology
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/3979 , vital:20497
- Description: The traditional approach of Quality by Testing (QbT) limits the assurance of product quality to in-process and post-production testing. To overcome these limitations, a more proactive and systematic means to product development and optimisation is required. Quality by Design (QbD) is an example of such an approach which focuses on understanding the product and its manufacturing process and emphasises that quality should be built into the product and not merely tested. The study aims to optimise ethionamide tablets, an immediate release oral solid dosage form using QbD.
- Full Text:
- Date Issued: 2015
Towards a framework for building security operation centers
- Authors: Jacobs, Pierre Conrad
- Date: 2015
- Subjects: Security systems industry , Systems engineering , Expert systems (Computer science) , COBIT (Information technology management standard) , Computer security
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4710 , http://hdl.handle.net/10962/d1017932
- Description: In this thesis a framework for Security Operation Centers (SOCs) is proposed. It was developed by utilising Systems Engineering best practices, combined with industry-accepted standards and frameworks, such as the TM Forum’s eTOM framework, CoBIT, ITIL, and ISO/IEC 27002:2005. This framework encompasses the design considerations, the operational considerations and the means to measure the effectiveness and efficiency of SOCs. The intent is to provide guidance to consumers on how to compare and measure the capabilities of SOCs provided by disparate service providers, and to provide service providers (internal and external) a framework to use when building and improving their offerings. The importance of providing a consistent, measureable and guaranteed service to customers is becoming more important, as there is an increased focus on holistic management of security. This has in turn resulted in an increased number of both internal and managed service provider solutions. While some frameworks exist for designing, building and operating specific security technologies used within SOCs, we did not find any comprehensive framework for designing, building and managing SOCs. Consequently, consumers of SOCs do not enjoy a constant experience from vendors, and may experience inconsistent services from geographically dispersed offerings provided by the same vendor.
- Full Text:
- Date Issued: 2015
- Authors: Jacobs, Pierre Conrad
- Date: 2015
- Subjects: Security systems industry , Systems engineering , Expert systems (Computer science) , COBIT (Information technology management standard) , Computer security
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4710 , http://hdl.handle.net/10962/d1017932
- Description: In this thesis a framework for Security Operation Centers (SOCs) is proposed. It was developed by utilising Systems Engineering best practices, combined with industry-accepted standards and frameworks, such as the TM Forum’s eTOM framework, CoBIT, ITIL, and ISO/IEC 27002:2005. This framework encompasses the design considerations, the operational considerations and the means to measure the effectiveness and efficiency of SOCs. The intent is to provide guidance to consumers on how to compare and measure the capabilities of SOCs provided by disparate service providers, and to provide service providers (internal and external) a framework to use when building and improving their offerings. The importance of providing a consistent, measureable and guaranteed service to customers is becoming more important, as there is an increased focus on holistic management of security. This has in turn resulted in an increased number of both internal and managed service provider solutions. While some frameworks exist for designing, building and operating specific security technologies used within SOCs, we did not find any comprehensive framework for designing, building and managing SOCs. Consequently, consumers of SOCs do not enjoy a constant experience from vendors, and may experience inconsistent services from geographically dispersed offerings provided by the same vendor.
- Full Text:
- Date Issued: 2015
Decision making for investment in residential real estate
- Authors: James, Matthew Gary Robert
- Date: 2015
- Subjects: Real estate investment -- Decision making Investment analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/10868 , vital:26831
- Description: Investment in residential real estate involves almost all members of the public at some stage of their lives, whether this be one's first home or the purchasing of one‟s first investment property. Understanding how to maximise the return on one's investment is something that can benefit the investor from before the investment is made until after the property has been sold, if it is sold at all. Literature surveys have concluded that there are a number of variables to consider when maximising the return on investment. As residential real estate is not a perfect science, there are guidelines and routes that are more beneficial to the investor depending on the current market, environment and economic standing. A survey was undertaken by members of the public that are involved in residential real estate investment, relative to the maximisation of the return on investment in residential real estate. The salient findings include: Investors in residential real estate spend more than average to extensive time prior, to investment researching the chosen residential real estate property; Investors in residential real estate perform a feasibility study before committing to the development whereas; Investors in residential real estate make use of financial advisors/valuers/estate agents or other investors' knowledge bases in deciding whether to invest in a residential property development; Investors in residential real estate believe that their degree of knowledge about the residential property market and residential property investments are average to very high. Investors in residential real estate somewhat agree that residential real estate investors do not effectively manage their investments. It was recommended that investors make use of help and guidance when investing in residential real estate, perform a feasibility study and ensure that they know their market before investing in a project. It was also noted that location plays a large role when deciding on an investment opportunity worth investing into. By creating awareness and ensuring that all methods and guidelines have been used to maximise the returns that their proposed residential real estate investment, investors can ensure a stronger, healthier cash flow and reap the highest possible benefits from their residential real estate portfolio.
- Full Text:
- Date Issued: 2015
- Authors: James, Matthew Gary Robert
- Date: 2015
- Subjects: Real estate investment -- Decision making Investment analysis
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/10868 , vital:26831
- Description: Investment in residential real estate involves almost all members of the public at some stage of their lives, whether this be one's first home or the purchasing of one‟s first investment property. Understanding how to maximise the return on one's investment is something that can benefit the investor from before the investment is made until after the property has been sold, if it is sold at all. Literature surveys have concluded that there are a number of variables to consider when maximising the return on investment. As residential real estate is not a perfect science, there are guidelines and routes that are more beneficial to the investor depending on the current market, environment and economic standing. A survey was undertaken by members of the public that are involved in residential real estate investment, relative to the maximisation of the return on investment in residential real estate. The salient findings include: Investors in residential real estate spend more than average to extensive time prior, to investment researching the chosen residential real estate property; Investors in residential real estate perform a feasibility study before committing to the development whereas; Investors in residential real estate make use of financial advisors/valuers/estate agents or other investors' knowledge bases in deciding whether to invest in a residential property development; Investors in residential real estate believe that their degree of knowledge about the residential property market and residential property investments are average to very high. Investors in residential real estate somewhat agree that residential real estate investors do not effectively manage their investments. It was recommended that investors make use of help and guidance when investing in residential real estate, perform a feasibility study and ensure that they know their market before investing in a project. It was also noted that location plays a large role when deciding on an investment opportunity worth investing into. By creating awareness and ensuring that all methods and guidelines have been used to maximise the returns that their proposed residential real estate investment, investors can ensure a stronger, healthier cash flow and reap the highest possible benefits from their residential real estate portfolio.
- Full Text:
- Date Issued: 2015
Montane Wetlands of the South African Great Escarpment : plant communities and environmental drivers
- Authors: Janks, Matthew Richard
- Date: 2015
- Subjects: Mountain plants -- South Africa -- Eastern Cape , Wetland plants -- South Africa -- Eastern Cape , Wetland plants -- Effect of altitude on -- South Africa -- Eastern Cape , Wetland ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4274 , http://hdl.handle.net/10962/d1018917
- Description: Wetlands provide a number of valuable functions to both the surrounding environment and society. The anaerobic conditions created by flooding in wetlands provide a habitat that supports unique assemblages of plant life. High altitude wetlands are amongst the most species-rich in South Africa. They house a number of rare species and play a vital role in the supply of water to lower lying areas. These are some of the reasons that mountain wetlands are of high conservation value. A phytosociological study was undertaken on the high altitude wetlands of the Great Escarpment with the aim of classifying the plant communities and identifying the environmental drivers of plant community patterns within these ecosystems. Data collection was focused in the Eastern Cape and was supplemented with data from existing studies to gain a more complete understanding of the wetlands of the Great Escarpment of South Africa. Using the Braun-Blanquet approach, Hierarchical Cluster Analysis and Indicator Species Analysis; five broad wetland groups were identified, comprised of 33 individual plant communities and 81 indicator species. Multivariate analysis, including Canonical Correspondence Analysis revealed that the effects of altitude, such as temperature and rainfall, are the most significant large-scale drivers of vegetation patterns. Smaller scale drivers include wetness and soil nutrients including nitrogen, phosphorus, electrical conductivity, sodium, and organic content. The identification of indicator species served to reveal potentially important wetland species across different areas of the Great Escarpment. The effects of altitude on plant community patterns highlights the susceptibility of the high altitude specific communities to upward temperature zone shifts resulting from global warming. Other threats include livestock trampling, water extraction, and land use change for agricultural purposes. The relative absence of alien species in these wetlands gives an indication of their pristine condition and therefore their importance as a reference from which they may be monitored. A large proportion of the wetlands studied here occur outside protected areas, and given the rate of wetland loss in South Africa, it is important that continued effective land management is practiced to ensure that these ecosystems are conserved in the future .
- Full Text:
- Date Issued: 2015
Montane Wetlands of the South African Great Escarpment : plant communities and environmental drivers
- Authors: Janks, Matthew Richard
- Date: 2015
- Subjects: Mountain plants -- South Africa -- Eastern Cape , Wetland plants -- South Africa -- Eastern Cape , Wetland plants -- Effect of altitude on -- South Africa -- Eastern Cape , Wetland ecology -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4274 , http://hdl.handle.net/10962/d1018917
- Description: Wetlands provide a number of valuable functions to both the surrounding environment and society. The anaerobic conditions created by flooding in wetlands provide a habitat that supports unique assemblages of plant life. High altitude wetlands are amongst the most species-rich in South Africa. They house a number of rare species and play a vital role in the supply of water to lower lying areas. These are some of the reasons that mountain wetlands are of high conservation value. A phytosociological study was undertaken on the high altitude wetlands of the Great Escarpment with the aim of classifying the plant communities and identifying the environmental drivers of plant community patterns within these ecosystems. Data collection was focused in the Eastern Cape and was supplemented with data from existing studies to gain a more complete understanding of the wetlands of the Great Escarpment of South Africa. Using the Braun-Blanquet approach, Hierarchical Cluster Analysis and Indicator Species Analysis; five broad wetland groups were identified, comprised of 33 individual plant communities and 81 indicator species. Multivariate analysis, including Canonical Correspondence Analysis revealed that the effects of altitude, such as temperature and rainfall, are the most significant large-scale drivers of vegetation patterns. Smaller scale drivers include wetness and soil nutrients including nitrogen, phosphorus, electrical conductivity, sodium, and organic content. The identification of indicator species served to reveal potentially important wetland species across different areas of the Great Escarpment. The effects of altitude on plant community patterns highlights the susceptibility of the high altitude specific communities to upward temperature zone shifts resulting from global warming. Other threats include livestock trampling, water extraction, and land use change for agricultural purposes. The relative absence of alien species in these wetlands gives an indication of their pristine condition and therefore their importance as a reference from which they may be monitored. A large proportion of the wetlands studied here occur outside protected areas, and given the rate of wetland loss in South Africa, it is important that continued effective land management is practiced to ensure that these ecosystems are conserved in the future .
- Full Text:
- Date Issued: 2015
The isolation, genetic characterisation and biological activity of a South African Phthorimaea operculella granulovirus (PhopGV-SA) for the control of the Potato Tuber Moth, Phthorimaea operculella (Zeller)
- Authors: Jukes, Michael David
- Date: 2015
- Subjects: Potato tuberworm , Potatoes -- Diseases and pests -- South Africa , Baculoviruses , Natural pesticides , Biological pest control agents , Potato tuberworm -- Biological control , Restriction enzymes, DNA
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4147 , http://hdl.handle.net/10962/d1017908
- Description: The potato tuber moth, Phthorimaea operculella (Zeller), is a major pest of potato crops worldwide causing significant damage to both field and stored tubers. The current control method in South Africa involves chemical insecticides, however, there is growing concern on the health and environmental risks of their use. The development of novel biopesticide based control methods may offer a potential solution for the future of insecticides. In this study a baculovirus was successfully isolated from a laboratory population of P. operculella. Transmission electron micrographs revealed granulovirus-like particles. DNA was extracted from recovered occlusion bodies and used for the PCR amplification of the lef-8, lef-9, granulin and egt genes. Sequence data was obtained and submitted to BLAST identifying the virus as a South African isolate of Phthorimaea operculella granulovirus (PhopGV-SA). Phylogenetic analysis of the lef-8, lef-9 and granulin amino acid sequences grouped the South African isolate with PhopGV-1346. Comparison of egt sequence data identified PhopGV-SA as a type II egt gene. A phylogenetic analysis of egt amino acid sequences grouped all type II genes, including PhopGV-SA, into a separate clade from types I, III, IV and V. These findings suggest that type II may represent the prototype structure for this gene with the evolution of types I, III and IV a result of large internal deletion events and subsequent divergence. PhopGV-SA was also shown to be genetically more similar to South American isolates (i.e. PhopGV-CHI or PhopGV-INDO) than it is to other African isolates, suggesting that the South African isolate originated from South America. Restriction endonuclease profiles of PhopGV-SA were similar to those of PhopGV-1346 and PhopGV-JLZ9f for the enzymes BamHI, HindIII, NruI and NdeI. A preliminary full genome sequence for PhopGV-SA was determined and compared to PhopGV-136 with some gene variation observed (i.e. odv-e66 and vp91/p95). The biological activity of PhopGV-SA against P. operculella neonate larvae was evaluated with an estimated LC₅₀ of 1.87×10⁸ OBs.ml⁻¹ being determined. This study therefore reports the characterisation of a novel South African PhopGV isolate which could potentially be developed into a biopesticide for the control of P. operculella.
- Full Text:
- Date Issued: 2015
- Authors: Jukes, Michael David
- Date: 2015
- Subjects: Potato tuberworm , Potatoes -- Diseases and pests -- South Africa , Baculoviruses , Natural pesticides , Biological pest control agents , Potato tuberworm -- Biological control , Restriction enzymes, DNA
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4147 , http://hdl.handle.net/10962/d1017908
- Description: The potato tuber moth, Phthorimaea operculella (Zeller), is a major pest of potato crops worldwide causing significant damage to both field and stored tubers. The current control method in South Africa involves chemical insecticides, however, there is growing concern on the health and environmental risks of their use. The development of novel biopesticide based control methods may offer a potential solution for the future of insecticides. In this study a baculovirus was successfully isolated from a laboratory population of P. operculella. Transmission electron micrographs revealed granulovirus-like particles. DNA was extracted from recovered occlusion bodies and used for the PCR amplification of the lef-8, lef-9, granulin and egt genes. Sequence data was obtained and submitted to BLAST identifying the virus as a South African isolate of Phthorimaea operculella granulovirus (PhopGV-SA). Phylogenetic analysis of the lef-8, lef-9 and granulin amino acid sequences grouped the South African isolate with PhopGV-1346. Comparison of egt sequence data identified PhopGV-SA as a type II egt gene. A phylogenetic analysis of egt amino acid sequences grouped all type II genes, including PhopGV-SA, into a separate clade from types I, III, IV and V. These findings suggest that type II may represent the prototype structure for this gene with the evolution of types I, III and IV a result of large internal deletion events and subsequent divergence. PhopGV-SA was also shown to be genetically more similar to South American isolates (i.e. PhopGV-CHI or PhopGV-INDO) than it is to other African isolates, suggesting that the South African isolate originated from South America. Restriction endonuclease profiles of PhopGV-SA were similar to those of PhopGV-1346 and PhopGV-JLZ9f for the enzymes BamHI, HindIII, NruI and NdeI. A preliminary full genome sequence for PhopGV-SA was determined and compared to PhopGV-136 with some gene variation observed (i.e. odv-e66 and vp91/p95). The biological activity of PhopGV-SA against P. operculella neonate larvae was evaluated with an estimated LC₅₀ of 1.87×10⁸ OBs.ml⁻¹ being determined. This study therefore reports the characterisation of a novel South African PhopGV isolate which could potentially be developed into a biopesticide for the control of P. operculella.
- Full Text:
- Date Issued: 2015
The role of seasonality, environmental correlates and edge effects on the diversity and abundance of small mammals in Afromontane forest patches, Eastern Cape, South Africa
- Authors: Junkuhn, Kyle Peter
- Date: 2015
- Subjects: Upland ecology -- South Africa -- Eastern Cape , Mammal populations -- South Africa -- Eastern Cape , Forest animals -- Adaptation -- South Africa -- Eastern Cape , Forest animals -- Climatic factors -- South Africa -- Eastern Cape , Forest animals -- Effect of habitat modification on -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4270 , http://hdl.handle.net/10962/d1018188
- Description: The Eastern Cape contains the majority of the remaining forested areas in South Africa (95.8 percent Coastal forests and 47.6 percent Afromontane forests), however these occur in fragments. Due to the rapid rise in the human population and its needs, conversion of forests to agricultural land and the extraction of timber increases, natural vegetation are lost and this therefore leads to forests becoming fragmented into small forest patches. One of the main consequences of forest fragmentation is loss of contiguous habitat, which is the dominant threat to species globally as it negatively affects both species richness and genetic diversity. This research investigates the effects that forest fragmentation has on small mammal diversity and abundance. The study sampled small mammals in Southern Mistbelt Afromontane forest patches in the Eastern Cape. The first aim of this study was to identify which environmental variable, or combinations of variables, affect the diversity and abundance of small mammals in fragmented forest patches in the Eastern Cape during the austral summer. The second aim was to compare seasonal changes in small mammal diversity and abundance at a forest edge compared to the forest core at Beggars Bush, an Afromontane forest in the Eastern Cape, South Africa. To identify the environmental impacts that different forests have on small mammals, nine different forests were chosen in the Eastern Cape and sampled during the summer in 2013. These nine forests were: Fort Fordyce Forest, Thaba Ndoda Forest, Hogsback Forest, Dassie Kraans Forest, Langeni Forest, Burchell’s Reserve Forest, Maiden Dam Forest and Kagaberg Forest. At each site, three transects of 30 Sherman Traps each were used. Trapping periods within each forest patch lasted between three to five consecutive nights and traps were inspected once a day in the morning. Nine environmental variables were initially identified and after being tested for normality and colinearity, five variables were chosen. These variables were Altitude, Mean Annual Temperature, Gradient, Patch Size and Mean annual potential evaporation. The number of individuals captures and species richness were then incorporated as dependent variables for best subset multiple regression model selection using the Akaike Information Criterion (AIC). For the second aim, the same trapping methods were used when comparing seasonal changes to diversity and abundance within the forest core. However at the forest edge, due to the small size of the forest, only 20 Sherman traps were used in each transect with five traps (25 percent) placed in the grassland and 15 (75 percent) placed in the forest along each transect. This study was one of few to survey small mammal diversity and abundance in fragmented forests in the Eastern Cape. Gradient, patch size and mean annual potential evaporation were the variables that best predicted the individual number of small mammal captures while only gradient best explained species richness. It does however, need to be noted that capture rates and species richness were very low and this would therefore effect the analysis of environmental variables. Future studies should have a larger sample size of forest patches and include more microhabitat environmental variables to determine their effects on small mammal diversity and abundance. However, it should be noted that through climatic extinction filtering, forest mammals are resilient generalists that can tolerate fragmentation effects. Furthermore, it was found that forest edges appear to play a significant role in small mammal diversity and abundance in the Beggars Bush Afromontane forest. Some species were habitat specialists such as Rhabdomys pumilio preferring the grassland habitat and Graphiurus murinus and Aethomys namaquensis the forest habitat, while Myosorex varius was the only species that was not habitat dependant. It was found that there was a greater diversity and abundance at the forest edge compared to within the forest core throughout most of the seasons. One possible flaw was that the sampling methods were different at the edge and within the forest and therefore future studies should ensure that the method stays uniform throughout the study.
- Full Text:
- Date Issued: 2015
- Authors: Junkuhn, Kyle Peter
- Date: 2015
- Subjects: Upland ecology -- South Africa -- Eastern Cape , Mammal populations -- South Africa -- Eastern Cape , Forest animals -- Adaptation -- South Africa -- Eastern Cape , Forest animals -- Climatic factors -- South Africa -- Eastern Cape , Forest animals -- Effect of habitat modification on -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4270 , http://hdl.handle.net/10962/d1018188
- Description: The Eastern Cape contains the majority of the remaining forested areas in South Africa (95.8 percent Coastal forests and 47.6 percent Afromontane forests), however these occur in fragments. Due to the rapid rise in the human population and its needs, conversion of forests to agricultural land and the extraction of timber increases, natural vegetation are lost and this therefore leads to forests becoming fragmented into small forest patches. One of the main consequences of forest fragmentation is loss of contiguous habitat, which is the dominant threat to species globally as it negatively affects both species richness and genetic diversity. This research investigates the effects that forest fragmentation has on small mammal diversity and abundance. The study sampled small mammals in Southern Mistbelt Afromontane forest patches in the Eastern Cape. The first aim of this study was to identify which environmental variable, or combinations of variables, affect the diversity and abundance of small mammals in fragmented forest patches in the Eastern Cape during the austral summer. The second aim was to compare seasonal changes in small mammal diversity and abundance at a forest edge compared to the forest core at Beggars Bush, an Afromontane forest in the Eastern Cape, South Africa. To identify the environmental impacts that different forests have on small mammals, nine different forests were chosen in the Eastern Cape and sampled during the summer in 2013. These nine forests were: Fort Fordyce Forest, Thaba Ndoda Forest, Hogsback Forest, Dassie Kraans Forest, Langeni Forest, Burchell’s Reserve Forest, Maiden Dam Forest and Kagaberg Forest. At each site, three transects of 30 Sherman Traps each were used. Trapping periods within each forest patch lasted between three to five consecutive nights and traps were inspected once a day in the morning. Nine environmental variables were initially identified and after being tested for normality and colinearity, five variables were chosen. These variables were Altitude, Mean Annual Temperature, Gradient, Patch Size and Mean annual potential evaporation. The number of individuals captures and species richness were then incorporated as dependent variables for best subset multiple regression model selection using the Akaike Information Criterion (AIC). For the second aim, the same trapping methods were used when comparing seasonal changes to diversity and abundance within the forest core. However at the forest edge, due to the small size of the forest, only 20 Sherman traps were used in each transect with five traps (25 percent) placed in the grassland and 15 (75 percent) placed in the forest along each transect. This study was one of few to survey small mammal diversity and abundance in fragmented forests in the Eastern Cape. Gradient, patch size and mean annual potential evaporation were the variables that best predicted the individual number of small mammal captures while only gradient best explained species richness. It does however, need to be noted that capture rates and species richness were very low and this would therefore effect the analysis of environmental variables. Future studies should have a larger sample size of forest patches and include more microhabitat environmental variables to determine their effects on small mammal diversity and abundance. However, it should be noted that through climatic extinction filtering, forest mammals are resilient generalists that can tolerate fragmentation effects. Furthermore, it was found that forest edges appear to play a significant role in small mammal diversity and abundance in the Beggars Bush Afromontane forest. Some species were habitat specialists such as Rhabdomys pumilio preferring the grassland habitat and Graphiurus murinus and Aethomys namaquensis the forest habitat, while Myosorex varius was the only species that was not habitat dependant. It was found that there was a greater diversity and abundance at the forest edge compared to within the forest core throughout most of the seasons. One possible flaw was that the sampling methods were different at the edge and within the forest and therefore future studies should ensure that the method stays uniform throughout the study.
- Full Text:
- Date Issued: 2015
Visualising M-learning system usage data
- Authors: Kamuhanda, Dany
- Date: 2015
- Subjects: Database management Information visualization
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/11015 , vital:26876
- Description: Data storage is an important practice for organisations that want to track their progress. The evolution of data storage technologies from manual methods of storing data on paper or in spreadsheets, to the automated methods of using computers to automatically log data into databases or text files has brought an amount of data that is beyond the level of human interpretation and comprehension. One way of addressing this issue of interpreting large amounts of data is data visualisation, which aims to convert abstract data into images that are easy to interpret. However, people often have difficulty in selecting an appropriate visualisation tool and visualisation techniques that can effectively visualise their data. This research proposes the processes that can be followed to effectively visualise data. Data logged from a mobile learning system is visualised as a proof of concept to show how the proposed processes can be followed during data visualisation. These processes are summarised into a model that consists of three main components: the data, the visualisation techniques and the visualisation tool. There are two main contributions in this research: the model to visualise mobile learning usage data and the visualisation of the usage data logged from a mobile learning system. The mobile learning system usage data was visualised to demonstrate how students used the mobile learning system. Visualisation of the usage data helped to convert the data into images (charts and graphs) that were easy to interpret. The evaluation results indicated that the proposed process and resulting visualisation techniques and tool assisted users in effectively and efficiently interpreting large volumes of mobile learning system usage data.
- Full Text:
- Date Issued: 2015
- Authors: Kamuhanda, Dany
- Date: 2015
- Subjects: Database management Information visualization
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: http://hdl.handle.net/10948/11015 , vital:26876
- Description: Data storage is an important practice for organisations that want to track their progress. The evolution of data storage technologies from manual methods of storing data on paper or in spreadsheets, to the automated methods of using computers to automatically log data into databases or text files has brought an amount of data that is beyond the level of human interpretation and comprehension. One way of addressing this issue of interpreting large amounts of data is data visualisation, which aims to convert abstract data into images that are easy to interpret. However, people often have difficulty in selecting an appropriate visualisation tool and visualisation techniques that can effectively visualise their data. This research proposes the processes that can be followed to effectively visualise data. Data logged from a mobile learning system is visualised as a proof of concept to show how the proposed processes can be followed during data visualisation. These processes are summarised into a model that consists of three main components: the data, the visualisation techniques and the visualisation tool. There are two main contributions in this research: the model to visualise mobile learning usage data and the visualisation of the usage data logged from a mobile learning system. The mobile learning system usage data was visualised to demonstrate how students used the mobile learning system. Visualisation of the usage data helped to convert the data into images (charts and graphs) that were easy to interpret. The evaluation results indicated that the proposed process and resulting visualisation techniques and tool assisted users in effectively and efficiently interpreting large volumes of mobile learning system usage data.
- Full Text:
- Date Issued: 2015
PyMORESANE: A Pythonic and CUDA-accelerated implementation of the MORESANE deconvolution algorithm
- Authors: Kenyon, Jonathan
- Date: 2015
- Subjects: Radio astronomy , Imaging systems in astronomy , MOdel REconstruction by Synthesis-ANalysis Estimators (MORESANE)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5563 , http://hdl.handle.net/10962/d1020098
- Description: The inadequacies of the current generation of deconvolution algorithms are rapidly becoming apparent as new, more sensitive radio interferometers are constructed. In light of these inadequacies, there is renewed interest in the field of deconvolution. Many new algorithms are being developed using the mathematical framework of compressed sensing. One such technique, MORESANE, has recently been shown to be a powerful tool for the recovery of faint difuse emission from synthetic and simulated data. However, the original implementation is not well-suited to large problem sizes due to its computational complexity. Additionally, its use of proprietary software prevents it from being freely distributed and used. This has motivated the development of a freely available Python implementation, PyMORESANE. This thesis describes the implementation of PyMORESANE as well as its subsequent augmentation with MPU and GPGPU code. These additions accelerate the algorithm and thus make it competitive with its legacy counterparts. The acceleration of the algorithm is verified by means of benchmarking tests for varying image size and complexity. Additionally, PyMORESANE is shown to work not only on synthetic data, but on real observational data. This verification means that the MORESANE algorithm, and consequently the PyMORESANE implementation, can be added to the current arsenal of deconvolution tools.
- Full Text:
- Date Issued: 2015
- Authors: Kenyon, Jonathan
- Date: 2015
- Subjects: Radio astronomy , Imaging systems in astronomy , MOdel REconstruction by Synthesis-ANalysis Estimators (MORESANE)
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:5563 , http://hdl.handle.net/10962/d1020098
- Description: The inadequacies of the current generation of deconvolution algorithms are rapidly becoming apparent as new, more sensitive radio interferometers are constructed. In light of these inadequacies, there is renewed interest in the field of deconvolution. Many new algorithms are being developed using the mathematical framework of compressed sensing. One such technique, MORESANE, has recently been shown to be a powerful tool for the recovery of faint difuse emission from synthetic and simulated data. However, the original implementation is not well-suited to large problem sizes due to its computational complexity. Additionally, its use of proprietary software prevents it from being freely distributed and used. This has motivated the development of a freely available Python implementation, PyMORESANE. This thesis describes the implementation of PyMORESANE as well as its subsequent augmentation with MPU and GPGPU code. These additions accelerate the algorithm and thus make it competitive with its legacy counterparts. The acceleration of the algorithm is verified by means of benchmarking tests for varying image size and complexity. Additionally, PyMORESANE is shown to work not only on synthetic data, but on real observational data. This verification means that the MORESANE algorithm, and consequently the PyMORESANE implementation, can be added to the current arsenal of deconvolution tools.
- Full Text:
- Date Issued: 2015
Mapping and prediction of archaeological sites of habitation by modern humans using GIS and expert mapping on the south coast of South Africa
- Authors: Kleyn, Philippa May
- Date: 2015
- Subjects: Geographic information systems -- South Africa , Archaeological sites , Kitchen-middens -- South Africa , Prehistoric peoples -- South Africa , Prehistoric peoples -- Dwellings -- South Africa , Geological mapping -- South Africa , Coastal archaeology -- South Africa , Archaeological significance -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4890 , http://hdl.handle.net/10962/d1018662
- Description: South Africa contains many archaeological resources including shell middens from the Middle Stone Age (MSA) and Later Stone Age (LSA). These shell middens give researchers insight into the behaviour of modern humans where the first fossil evidence appears in Africa around 200 000 years ago (Klein, 2008). Research into shell middens is therefore vital to understand the origin of human kind. This study investigates whether Geographical Information Systems (GIS) is a useful tool for predicting locations of unknown shell midden sites using the characteristics of known areas of modern human habitation. This was done using suitability analysis and expert mapping techniques. Ground truthing of the results of the desktop analysis revealed that GIS is not a useful tool for predicting sites of modern habitation as the characteristics that determine human habitation are too variable.
- Full Text:
- Date Issued: 2015
- Authors: Kleyn, Philippa May
- Date: 2015
- Subjects: Geographic information systems -- South Africa , Archaeological sites , Kitchen-middens -- South Africa , Prehistoric peoples -- South Africa , Prehistoric peoples -- Dwellings -- South Africa , Geological mapping -- South Africa , Coastal archaeology -- South Africa , Archaeological significance -- South Africa
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4890 , http://hdl.handle.net/10962/d1018662
- Description: South Africa contains many archaeological resources including shell middens from the Middle Stone Age (MSA) and Later Stone Age (LSA). These shell middens give researchers insight into the behaviour of modern humans where the first fossil evidence appears in Africa around 200 000 years ago (Klein, 2008). Research into shell middens is therefore vital to understand the origin of human kind. This study investigates whether Geographical Information Systems (GIS) is a useful tool for predicting locations of unknown shell midden sites using the characteristics of known areas of modern human habitation. This was done using suitability analysis and expert mapping techniques. Ground truthing of the results of the desktop analysis revealed that GIS is not a useful tool for predicting sites of modern habitation as the characteristics that determine human habitation are too variable.
- Full Text:
- Date Issued: 2015