Commensal bacteria belonging to the Staphylococcus Acinetobacter and Stenotrophomonas genera as reservoirs of antibiotic resistance determinants in the environment of Nkonkobe Municipality, Eastern Cape Province , South Africa
- Authors: Adegoke, Anthony Ayodeji
- Date: 2012
- Subjects: Acinetobacter infections , Drug resistance in microorganisms , Staphylococcal infections , Bacterial diseases
- Language: English
- Type: Thesis , Doctoral , Degree
- Identifier: http://hdl.handle.net/10353/6539 , vital:30551
- Description: A study to assess the potentials of some commensal bacteria that belong to Staphylococcus, Acinetobacter and Stenotrophomonas genera as reservoirs of antibiotic resistance determinants in the environment of Nkonkobe Municipality of the Eastern Cape Province, South Africa, was carried out using standard microbiological and molecular techniques. A total of 120 Staphylococcus isolates which consisted of Staphylococcus haemolyticus (30%), Staphylococcus aureus (23.3%) from pig; Staphylococcus capitis (15%) from goat; Staphylococcus heamolyticus (5%) and Staphylococcus xylosus (15%) from cattle and other Staphylococci (11%) from dead chicken and pigs were isolated. About 23.3% of these isolates were coagulase positive and 76.7% were coagulase negative. This difference in prevalence along coagulase production divide was statistically significant (p < 0.05). Eighty-six Acinetobacter species (Acinetobacter baumannii/calcoaceticus and Acinetobacter haemolyticus) were also isolated from Alice and Fort Beaufort towns samples, while 125 Stenotrophomonas maltophilia isolates were from grass root rhizosphere (96%) and soil butternut root rhizosphere (4%). Between 75-100% of the Staphylococccus species were resistant to Penicillin G, tetracycline, sulphamethaxole and nalidixic acid; about 38 % were methicillin resistant, consisting of 12.6% methicillin resistant Staphylococcus aureus (MRSA) from pig and a total of 12% vancomycin resistant were observed. Also, 12% of the isolates were erythromycin resistant while 40.2 % were resistant to the third generation cephalosporin, ceftazidime. The antibiotic resistance genes vanA, VanB, eryA, eryB, eryC were not detected in all the phenotypically resistant Staphylococccus species, but mec A gene and mph genes were detected. In the Acinetobacter species, a wide range of 30-100% resistance to penicillin G, ceftriazone, nitrofurantoin, erythromycin, and augmentin was observed. Polymerase chain reaction (PCR) revealed the presence of Tet(B) and Tet(39) genes in these species, while Tet (A), Tet(M) and Tet(H) were absent. Also, 9.3% of the Acinetobacter species showed phenotypic production of extended spectrum beta lactamases (ESBLs) while 3.5% were positive for the presence of blaCTX-M-1 genes. The Stenotrophomonas maltophilia isolates showed varying resistance to meropenem (8.9%), cefuroxime (95.6 %), ampicillin-sulbactam (53.9%), ceftazidime (10.7%), cefepime (29.3 %), minocycline (2.2%), kanamycin (56.9%), ofloxacin (2.9%), levofloxacin (1.3%), moxifloxacin (2.8%), ciprofloxacin (24.3%), gatifloxacin (1.3%), polymyxin B (2.9 %), cotrimoxazole (26.1%), trimethoprim (98.6%), aztreonam(58%) and Polymyxin B (2.9 %). The isolates exhibited significant susceptibility to the fluoroquinolones (74.3-94.7 %), polymycin (97.1%) and meropenem (88.1%). Only sul3 genes were the only sulphonamide resistance gene detected among the trimethoprim-sulphamethoxazole resistant isolates. The observed multiple antibiotic resistance indeces (MARI) of >2 for Staphylococcus species, Acinetobacter species and Stenotrophomonas maltophilia suggest that they have arisen from high-risk sources where antibiotics are in constant arbitrary use resulting in high selective pressure. The presence of tetracycline resistance genes in Acinetobacter species justifies the observed phenotypic resistance to oxytetracycline and intermediate resistance to minocycline. High phenotypic resistance and the presence of some resistance genes in Staphylococcus species is a possible threat to public health and suggests animals to be important reservoirs of antibiotic resistance determinants in the environment. Indiscriminate use of antibiotics induces this kind of antibiotic resistance and should be discouraged. Personal hygiene is encouraged as it reduces the load of Acinetobacter species contacted from the environment that may be difficult to control. Commensal Stenotrophomonas maltophilia are as important as their clinical counterparts due to their roles in opportunistic infection, antibiotic resistance and their associated genes, especially sul gene. Personal hygiene is hereby advocated especially when in contact with soil, plants and plants’ rhizospheric soil.
- Full Text:
- Date Issued: 2012
- Authors: Adegoke, Anthony Ayodeji
- Date: 2012
- Subjects: Acinetobacter infections , Drug resistance in microorganisms , Staphylococcal infections , Bacterial diseases
- Language: English
- Type: Thesis , Doctoral , Degree
- Identifier: http://hdl.handle.net/10353/6539 , vital:30551
- Description: A study to assess the potentials of some commensal bacteria that belong to Staphylococcus, Acinetobacter and Stenotrophomonas genera as reservoirs of antibiotic resistance determinants in the environment of Nkonkobe Municipality of the Eastern Cape Province, South Africa, was carried out using standard microbiological and molecular techniques. A total of 120 Staphylococcus isolates which consisted of Staphylococcus haemolyticus (30%), Staphylococcus aureus (23.3%) from pig; Staphylococcus capitis (15%) from goat; Staphylococcus heamolyticus (5%) and Staphylococcus xylosus (15%) from cattle and other Staphylococci (11%) from dead chicken and pigs were isolated. About 23.3% of these isolates were coagulase positive and 76.7% were coagulase negative. This difference in prevalence along coagulase production divide was statistically significant (p < 0.05). Eighty-six Acinetobacter species (Acinetobacter baumannii/calcoaceticus and Acinetobacter haemolyticus) were also isolated from Alice and Fort Beaufort towns samples, while 125 Stenotrophomonas maltophilia isolates were from grass root rhizosphere (96%) and soil butternut root rhizosphere (4%). Between 75-100% of the Staphylococccus species were resistant to Penicillin G, tetracycline, sulphamethaxole and nalidixic acid; about 38 % were methicillin resistant, consisting of 12.6% methicillin resistant Staphylococcus aureus (MRSA) from pig and a total of 12% vancomycin resistant were observed. Also, 12% of the isolates were erythromycin resistant while 40.2 % were resistant to the third generation cephalosporin, ceftazidime. The antibiotic resistance genes vanA, VanB, eryA, eryB, eryC were not detected in all the phenotypically resistant Staphylococccus species, but mec A gene and mph genes were detected. In the Acinetobacter species, a wide range of 30-100% resistance to penicillin G, ceftriazone, nitrofurantoin, erythromycin, and augmentin was observed. Polymerase chain reaction (PCR) revealed the presence of Tet(B) and Tet(39) genes in these species, while Tet (A), Tet(M) and Tet(H) were absent. Also, 9.3% of the Acinetobacter species showed phenotypic production of extended spectrum beta lactamases (ESBLs) while 3.5% were positive for the presence of blaCTX-M-1 genes. The Stenotrophomonas maltophilia isolates showed varying resistance to meropenem (8.9%), cefuroxime (95.6 %), ampicillin-sulbactam (53.9%), ceftazidime (10.7%), cefepime (29.3 %), minocycline (2.2%), kanamycin (56.9%), ofloxacin (2.9%), levofloxacin (1.3%), moxifloxacin (2.8%), ciprofloxacin (24.3%), gatifloxacin (1.3%), polymyxin B (2.9 %), cotrimoxazole (26.1%), trimethoprim (98.6%), aztreonam(58%) and Polymyxin B (2.9 %). The isolates exhibited significant susceptibility to the fluoroquinolones (74.3-94.7 %), polymycin (97.1%) and meropenem (88.1%). Only sul3 genes were the only sulphonamide resistance gene detected among the trimethoprim-sulphamethoxazole resistant isolates. The observed multiple antibiotic resistance indeces (MARI) of >2 for Staphylococcus species, Acinetobacter species and Stenotrophomonas maltophilia suggest that they have arisen from high-risk sources where antibiotics are in constant arbitrary use resulting in high selective pressure. The presence of tetracycline resistance genes in Acinetobacter species justifies the observed phenotypic resistance to oxytetracycline and intermediate resistance to minocycline. High phenotypic resistance and the presence of some resistance genes in Staphylococcus species is a possible threat to public health and suggests animals to be important reservoirs of antibiotic resistance determinants in the environment. Indiscriminate use of antibiotics induces this kind of antibiotic resistance and should be discouraged. Personal hygiene is encouraged as it reduces the load of Acinetobacter species contacted from the environment that may be difficult to control. Commensal Stenotrophomonas maltophilia are as important as their clinical counterparts due to their roles in opportunistic infection, antibiotic resistance and their associated genes, especially sul gene. Personal hygiene is hereby advocated especially when in contact with soil, plants and plants’ rhizospheric soil.
- Full Text:
- Date Issued: 2012
Genetic diversity, resistance profile of hiv and risk assessment of mother-to-child transmission in pregnant women on antiretroviral therapy in the Eastern Cape, South Africa
- Authors: Adeniyi, Oladele Vincent
- Date: 2019
- Subjects: Antiretroviral agents , HIV infections -- Treatment -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/15120 , vital:40183
- Description: Despite the initiation of life-long ART in HIV-infected pregnant women, the rate and determinants of infant HIV transmission are not known, especially in the poor resource settings of the Eastern Cape, South Africa. Maternal anti-retroviral therapy (ART) is crucial for elimination of mother-to-child transmission (MTCT) of HIV. However, the inevitable risks of emergence of HIV drug resistance poses significant threat to achieving this goal of HIV-free generation and keeping mothers alive. Also, it is unclear if women with high viral load at delivery have acquired clinically relevant mutations, which could confer resistance to the ART, thus, further increasing the risks of motherto-child transmission of HIV-drug resistance strains. In addition to the gaps identified in the prevention of mother-to-child transmission (PMTCT) context, the understanding of regional epidemics is crucial to the broader epidemiological profiling of HIV infections in the country. Despite the rapid influx of foreign nationals to South African and Eastern Cape Province, there has not been any molecular epidemiological studies profiling the HIV diversity in the Eastern Cape.
- Full Text:
- Date Issued: 2019
- Authors: Adeniyi, Oladele Vincent
- Date: 2019
- Subjects: Antiretroviral agents , HIV infections -- Treatment -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/15120 , vital:40183
- Description: Despite the initiation of life-long ART in HIV-infected pregnant women, the rate and determinants of infant HIV transmission are not known, especially in the poor resource settings of the Eastern Cape, South Africa. Maternal anti-retroviral therapy (ART) is crucial for elimination of mother-to-child transmission (MTCT) of HIV. However, the inevitable risks of emergence of HIV drug resistance poses significant threat to achieving this goal of HIV-free generation and keeping mothers alive. Also, it is unclear if women with high viral load at delivery have acquired clinically relevant mutations, which could confer resistance to the ART, thus, further increasing the risks of motherto-child transmission of HIV-drug resistance strains. In addition to the gaps identified in the prevention of mother-to-child transmission (PMTCT) context, the understanding of regional epidemics is crucial to the broader epidemiological profiling of HIV infections in the country. Despite the rapid influx of foreign nationals to South African and Eastern Cape Province, there has not been any molecular epidemiological studies profiling the HIV diversity in the Eastern Cape.
- Full Text:
- Date Issued: 2019
Synthesis, characterization and evaluation of photophysical and electrochemical properties of ruthenium(II) complexes for dye-sensitized solar cells
- Authors: Adjogri, Shadrack John
- Date: 2018
- Subjects: Ruthenium Ruthenium compounds
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10353/17828 , vital:41363
- Description: Eight series of thirty (30) novel heteroleptic ruthenium(II) complexes were designed, synthesized and spectroscopically characterized, with the following general molecular formulae as [Ru(bdmpmar)(H2dcbpy)(NCS)]+, [Ru(bdmpmar)(vpdiinp)(H2dcbpy)]2,+, [Ru(bdmpmar)(vpbpp)(H2dcbpy)]2+,[Ru(H2dcbpy)2(N^)(NCS)]+, [Ru(H2dcbpy)2(N^)2]2+, [Ru(H2dcbpy)(N^)2(NCS)2], [Ru(H2dcbpy)(N^)(NCS)3]– and [Ru(vptpy)(H2dcbpy)(N^^^)]2+ where bdmpmar is a tridentate ligand of N,N-bis(3, 5-dimethylpyrazol-1-yl-methyl) aromatic organic compound (such aromatic organic compounds(Ar) are anthranilic acid, 4-methoxy-2-nitroaniline, aniline, toluidine, cyclohexylamine and anisidine), vpdiinp represents a monodentate ligand of 11-(4-vinylphenyl)diindeno[1,2-b:2’,1’-e]pyridine, vpbpp represents a monodentate ligand of 4-(4-vinylphenyl)-2.6-bis(phenyl)pyridine and vptpy represents a tridentate ligand of 4’-(4-vinyl)-2,2’:6’,2’’-terpyridine. Meanwhile, N^ represents any of the monodentate ligands of either vpdiinp or vpbpp and (N^^^) represents any of the monodentate ligands either of vpdiinp or vpbpp or NCS as disclosed in series VIII. The complexes were characterized by conductivity measurement, solubility, melting point, UV-Vis, PL, FTIR (ATR), NMR, Cyclic and square wave voltammetry. Nine chelating ligands, comprising of six (6) tripodal chelating ligands, two (2) vinyl monodentate ligands and one (1) vinyl tridentate ligand, were used for the synthesis of ruthenium(II) complexes ATR-FTIR spectra of all the ruthenium(II) complexes measured as solid samples, exhibited fine resolution IR bands in region between 3473-3438 cm-1 of carboxylic group in H2dcbpy. The bands in the range 3040-2950 cm-1 were ascribed to C-H bond stretching for the CH3 groups. The coordination of NCS group in the sphere of ruthenium(II) complexes related to series I, IV, VI VII and one compound of series VIII was investigated by ATR-FTIR spectroscopy. Bands in the range of 2116-2106 cm-1 and 777-770 cm-1 are ascribed to the respective N=C and the C=S bond stretching vibration which confirms the N-coordination of the SCN group. For all the complexes, the stretching vibration of Ru-N bonding was between 466 and 411 cm-1 due to coordination of the nitrogen atoms of the ligands to ruthenium central metal atom. The introduction of the two vinyl monodentate ligands (vpdiinp and vpbpp) in the coordination sphere of [Ru(bdmpmar)(vpdiinp)(H2dcbpy)]2+, [Ru(bdmpmar) (vpbpp)(H2dcbpy)]2+, [Ru(H2dcbpy)2(N^)(NCS)]+, [Ru(H2dcbpy)2(N^)2]2+, [Ru(H2dcbpy)(N^)2(NCS)2], [Ru(H2dcbpy)(N^)(NCS)3]– and [Ru(vptpy)(H2dcbpy)(N^^^)]2+ respectively, all related to series II, III, IV, V, VI, VII and two compounds of series VIII ruthenium(II) complexes, has been studied using the 1H and 13C NMR spectroscopy techniques. The 1H NMR spectra of series II-VII and the two compounds of series VIII of the ruthenium(II) complexes show multiplets in the aromatic region above 6 ppm due to the presence of either vpdiinp or vpbpp ligand, situated in different magnetic environment. However, no splitting pattern was observed in series I and part of VIII complexes possibly due to the absence vinyl monodentate subunits (vpdiinp and vpbpp) in series I and one of compound in series VIII ruthenium(II) complexes show no signals of complex splitting patterns. Carbon-13 NMR spectra data of series I to VIII ruthenium(II) complexes show most resonance signals range in the aromatic region of (δ 116.54-199.63ppm) corresponding to the molecular formulation of ruthenium(II) complexes incorporating 4,4-dicarboxy-2,2’-bipyridine, bdmpmar, vptpy, vpdiinp or vpbpp and NCS ligands respectively, depending on the intrinsic ligand variations. Carbon-13 NMR spectra data of series I, IV, VI VII and one compound in VIII show resonance peaks within the range 130-135 ppm are ascribed to NCS ligand confirming the presence of N-coordinated thiocyanate. Cyclic voltammograms of series I-IV and VI-VIII complexes display ruthenium-based oxidative peaks and the pyridines ligand-based reductive peaks. The redox behavior of complexes 4-12, 14-16, 18-20, 24-26 and 30 is dominated by the Ru(II)/R(III) redox couple in region (E1/2 between 0.53 and 1.18) and the pyridines ligand-based redox couples in the region between (E1/2 between −0.25 and −1.45). The photophysical property studies of the Ru(II) complexes are determined through the acquisitions of the absorption spectra, which tends to have profound effect on the short circuit current of DSSC. The absorption maxima were tuned by the introduction and variation of six (6) tripodal chelating ligands, two (2) vinyl monodentate ligands and one (1) vinyl tridentate ligand. From the studies, the results show that series IV, V, VI, VII and VIII complexes of molecular formula [Ru(H2dcbpy)2(N^)(NCS)]2+, [Ru(H2dcbpy)2(N^)2]2+, [Ru(H2dcbpy)(N^)2(NCS)2]2+, [Ru(H2dcbpy)(N^)(NCS)3]2+ and [Ru(vptpy)(H2dcbpy)(N^^^)]2+ respectively, have higher and multiple local absorption maxima near-IR region than the complexes of series I, II and III of molecular [Ru(bdmpmar)(H2dcbpy)(NCS)]2,+, [Ru(bdmpmar)(vpdiinp)(H2dcbpy)]2,+, [Ru(bdmpmar)(vpbpp)(H2dcbpy)]2,+respectively.
- Full Text:
- Date Issued: 2018
- Authors: Adjogri, Shadrack John
- Date: 2018
- Subjects: Ruthenium Ruthenium compounds
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10353/17828 , vital:41363
- Description: Eight series of thirty (30) novel heteroleptic ruthenium(II) complexes were designed, synthesized and spectroscopically characterized, with the following general molecular formulae as [Ru(bdmpmar)(H2dcbpy)(NCS)]+, [Ru(bdmpmar)(vpdiinp)(H2dcbpy)]2,+, [Ru(bdmpmar)(vpbpp)(H2dcbpy)]2+,[Ru(H2dcbpy)2(N^)(NCS)]+, [Ru(H2dcbpy)2(N^)2]2+, [Ru(H2dcbpy)(N^)2(NCS)2], [Ru(H2dcbpy)(N^)(NCS)3]– and [Ru(vptpy)(H2dcbpy)(N^^^)]2+ where bdmpmar is a tridentate ligand of N,N-bis(3, 5-dimethylpyrazol-1-yl-methyl) aromatic organic compound (such aromatic organic compounds(Ar) are anthranilic acid, 4-methoxy-2-nitroaniline, aniline, toluidine, cyclohexylamine and anisidine), vpdiinp represents a monodentate ligand of 11-(4-vinylphenyl)diindeno[1,2-b:2’,1’-e]pyridine, vpbpp represents a monodentate ligand of 4-(4-vinylphenyl)-2.6-bis(phenyl)pyridine and vptpy represents a tridentate ligand of 4’-(4-vinyl)-2,2’:6’,2’’-terpyridine. Meanwhile, N^ represents any of the monodentate ligands of either vpdiinp or vpbpp and (N^^^) represents any of the monodentate ligands either of vpdiinp or vpbpp or NCS as disclosed in series VIII. The complexes were characterized by conductivity measurement, solubility, melting point, UV-Vis, PL, FTIR (ATR), NMR, Cyclic and square wave voltammetry. Nine chelating ligands, comprising of six (6) tripodal chelating ligands, two (2) vinyl monodentate ligands and one (1) vinyl tridentate ligand, were used for the synthesis of ruthenium(II) complexes ATR-FTIR spectra of all the ruthenium(II) complexes measured as solid samples, exhibited fine resolution IR bands in region between 3473-3438 cm-1 of carboxylic group in H2dcbpy. The bands in the range 3040-2950 cm-1 were ascribed to C-H bond stretching for the CH3 groups. The coordination of NCS group in the sphere of ruthenium(II) complexes related to series I, IV, VI VII and one compound of series VIII was investigated by ATR-FTIR spectroscopy. Bands in the range of 2116-2106 cm-1 and 777-770 cm-1 are ascribed to the respective N=C and the C=S bond stretching vibration which confirms the N-coordination of the SCN group. For all the complexes, the stretching vibration of Ru-N bonding was between 466 and 411 cm-1 due to coordination of the nitrogen atoms of the ligands to ruthenium central metal atom. The introduction of the two vinyl monodentate ligands (vpdiinp and vpbpp) in the coordination sphere of [Ru(bdmpmar)(vpdiinp)(H2dcbpy)]2+, [Ru(bdmpmar) (vpbpp)(H2dcbpy)]2+, [Ru(H2dcbpy)2(N^)(NCS)]+, [Ru(H2dcbpy)2(N^)2]2+, [Ru(H2dcbpy)(N^)2(NCS)2], [Ru(H2dcbpy)(N^)(NCS)3]– and [Ru(vptpy)(H2dcbpy)(N^^^)]2+ respectively, all related to series II, III, IV, V, VI, VII and two compounds of series VIII ruthenium(II) complexes, has been studied using the 1H and 13C NMR spectroscopy techniques. The 1H NMR spectra of series II-VII and the two compounds of series VIII of the ruthenium(II) complexes show multiplets in the aromatic region above 6 ppm due to the presence of either vpdiinp or vpbpp ligand, situated in different magnetic environment. However, no splitting pattern was observed in series I and part of VIII complexes possibly due to the absence vinyl monodentate subunits (vpdiinp and vpbpp) in series I and one of compound in series VIII ruthenium(II) complexes show no signals of complex splitting patterns. Carbon-13 NMR spectra data of series I to VIII ruthenium(II) complexes show most resonance signals range in the aromatic region of (δ 116.54-199.63ppm) corresponding to the molecular formulation of ruthenium(II) complexes incorporating 4,4-dicarboxy-2,2’-bipyridine, bdmpmar, vptpy, vpdiinp or vpbpp and NCS ligands respectively, depending on the intrinsic ligand variations. Carbon-13 NMR spectra data of series I, IV, VI VII and one compound in VIII show resonance peaks within the range 130-135 ppm are ascribed to NCS ligand confirming the presence of N-coordinated thiocyanate. Cyclic voltammograms of series I-IV and VI-VIII complexes display ruthenium-based oxidative peaks and the pyridines ligand-based reductive peaks. The redox behavior of complexes 4-12, 14-16, 18-20, 24-26 and 30 is dominated by the Ru(II)/R(III) redox couple in region (E1/2 between 0.53 and 1.18) and the pyridines ligand-based redox couples in the region between (E1/2 between −0.25 and −1.45). The photophysical property studies of the Ru(II) complexes are determined through the acquisitions of the absorption spectra, which tends to have profound effect on the short circuit current of DSSC. The absorption maxima were tuned by the introduction and variation of six (6) tripodal chelating ligands, two (2) vinyl monodentate ligands and one (1) vinyl tridentate ligand. From the studies, the results show that series IV, V, VI, VII and VIII complexes of molecular formula [Ru(H2dcbpy)2(N^)(NCS)]2+, [Ru(H2dcbpy)2(N^)2]2+, [Ru(H2dcbpy)(N^)2(NCS)2]2+, [Ru(H2dcbpy)(N^)(NCS)3]2+ and [Ru(vptpy)(H2dcbpy)(N^^^)]2+ respectively, have higher and multiple local absorption maxima near-IR region than the complexes of series I, II and III of molecular [Ru(bdmpmar)(H2dcbpy)(NCS)]2,+, [Ru(bdmpmar)(vpdiinp)(H2dcbpy)]2,+, [Ru(bdmpmar)(vpbpp)(H2dcbpy)]2,+respectively.
- Full Text:
- Date Issued: 2018
Analyses of Retail and Transport Geography of Liquefied Petroleum Products in Ibadan metropolis, Nigeria
- Authors: Ajayi, Adeyinka Peter
- Date: 2019
- Subjects: Petroleum products
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/19065 , vital:40090
- Description: This study analyzed the effects that spatial arrangement of petroleum products retail outlets and the supply chain management techniques employed for products distribution (for both intra city and intercity shipments) have on the retailing dynamism of petroleum products within built environment and peripherals of Ibadan metropolis over the years. Specifically, the study investigated the differentials in the spatial configurations of petroleum products retail outlets between the core and periurban zones of the metropolis. An attempt was made to determine the explanatory variables that influence the spatial distributional decisions of petroleum products retail outlets in the metropolis. The study equally examined how the supply chain management (SCM) techniques by the different categories of the retail outlet owners influence the efficient and cost effective distribution of petroleum products. Lastly an attempt was made to analyze the relationship between the socio-economic attributes of the haulers and the achievement of compliance to the HSE stipulations guiding the conveyance of petroleum products. The theoretical underpinnings for the research were a derivative of the amalgamation of normative and psychological theories from geography, psychology, SCM and retailing science. Specifically, Expectation Disconfirmation Theory (EDT), Distributive Justice, Central Place Theory (CPT) Theories of Urban Impact (TUI) and Theory of Constraint (ToC) were the theories utilized in the study. For the achievement of the first objective which was to investigate the possible differential in the compliance rate between spatial pattern of fuel retail outlets in the core and peripheral zones of Ibadan metropolis, the first hypothesis of the study (which examined if there was no significant difference in the rate of compliance to the planning authority stipulations guiding the location pattern of petroleum product retail outlets between those located in the built up and xxiv peripheral zones of the city), was tested through the use of buffering and proximity analyses in the ArcMap environment of ArcGIS 10.1, while inferential statistical tool of an independent-samples t-test was conducted to compare the rate of compliance to the stipulations guiding the locations of these outlets in both the core and the peripheral zones. The result from the GIS analysis indicated that 33 (15.56%) out of the 220 outlets in the core zone of the metropolis complied with the planning stipulations guiding the location of fuel retail outlets. For the peripheral zone, out of the 220 fuel retail outlets 24 (10.90%) complied with the stipulations. The result from the t- test which was employed to test the hypothesis indicated that no significant difference existed in the rate of compliance t (263) =-2.66, p = 0.08 between fuel retail outlets in the core zone (M=3.9, SD=1.4) and peripheral zone (M=4.5, SD=1.79). The alternate hypothesis which stated that ―no significant difference existed in the compliance rate between fuel retail outlets located in the two zones‖ is accepted. For the achievement of the second objective of the study which was to analyze the factors which determine the location of fuel retail outlets both in the core and peripheral zones of Ibadan metropolis. All the managers/owners of the 432 fuel retail outlets in the metropolis were sampled out of which 256 questionnaires were retrieved for the purpose of this analysis. The breakdown of the socio-economic characteristics of the sampled respondents showed that the gender distribution showed that 194 (75.78%) of the respondents were males, while 64 (24.22 %) were females. The average age of the sampled population was 33.70 years. The mixed method was employed for the achievement of the second objective of this study. Logistic Regression Model (LRM) was employed to test the hypothesis and the result revealed that the inclusion of the independent variables in the model increased the overall level of it accuracy. The overall significance revealed that the Model Chi- xxv Square, derived from the likelihood fitted is also accurate (X2 = 43.47, df=5, p>.05). The model chi-square value of 43.47 (approximately 44% ) was significant. Thus, the indication is that the model has a good fit in predicting the possibility of a fuel retail outlet being located in the core or peripheral zone of the metropolis as determined by the explanatory variables (the independent variables accounted for about 44% of possible factors which determined whether a fuel retail outlets is located either within the core or peripheral zones of the metropolis. The remaining 56% are factors not considered in the study). The result gotten from the in depth interview sessions corroborated the findings from the tested hypothesis. The third objective was to examine the effects which the supply chain technique employed (either vertically integrated model or third-party arrangement) has on the achievement of efficient and effective distribution of the products. In order to achieve this objective, all the 389 registered members of Petroleum Tanker Drivers (PTD) association who are members of the PTD in the metropolis were sampled, 265 (around 70%) of the distributed questionnaires were retrieved and used for the analysis. In depth interview sessions were also conducted with three different managers of the three major conglomerates in the downstream sector of the Nigerian petroleum sector. The result of one-way between subjects (ANOVA) which was conducted to compare differences in the management and performances of haulage services outsourced to the 3PLS and those run under VIM showed that there was a significant effect of ownership type on management performance (F (2,262) = 60.26, p<.05). The null hypothesis was therefore rejected while the alternate hypothesis was accepted. The findings from the interview sessions posted similar results. The fourth and final objective was to analyze the effect that the socio-economic attributes of the participants (haulers and managers of retail outlets) involved in the distribution of xxvi petroleum products has on the safe, efficient and cost-effective distribution of product and this was done through the use of descriptive statistics, inferential statistics and incisive analysis of the interview sessions. A total number of 265 (70%) out of the 389 registered members of Petroleum Tanker Driver Association (PTDA) participated in the study. Multiple regression analysis (MRA) was used to test this hypothesis. The result from the statistical analysis show that the use of stimulant, work condition, marital status and educational attainment/literacy level have joint influence on compliance (R2 = 0.31, F (4,260) = 29.72, p<.05). On the basis of the foregoing, the hypothesis is thus accepted. The result from the interview sessions confirmed the existence of strong relationship between the explanatory variables and the hypothetical dependant variable. The study recommended a review of the planning processes guiding the establishment of fuel retail outlets. The study also advocated that retailers should endeavour to have stronger control over the supply chain of their products this could done by investing more in VIM rather than outsourcing such functions to 3PLs. This will help in better business performances. Government agencies in charge of monitoring drug abuse among haulers are advised to be more proactive by the duo of prevention and punishment strategies. This should include advocacy campaign against drug abuse. Different ranges of punishments should also be meted out for individual haulers found culpable.
- Full Text:
- Date Issued: 2019
- Authors: Ajayi, Adeyinka Peter
- Date: 2019
- Subjects: Petroleum products
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/19065 , vital:40090
- Description: This study analyzed the effects that spatial arrangement of petroleum products retail outlets and the supply chain management techniques employed for products distribution (for both intra city and intercity shipments) have on the retailing dynamism of petroleum products within built environment and peripherals of Ibadan metropolis over the years. Specifically, the study investigated the differentials in the spatial configurations of petroleum products retail outlets between the core and periurban zones of the metropolis. An attempt was made to determine the explanatory variables that influence the spatial distributional decisions of petroleum products retail outlets in the metropolis. The study equally examined how the supply chain management (SCM) techniques by the different categories of the retail outlet owners influence the efficient and cost effective distribution of petroleum products. Lastly an attempt was made to analyze the relationship between the socio-economic attributes of the haulers and the achievement of compliance to the HSE stipulations guiding the conveyance of petroleum products. The theoretical underpinnings for the research were a derivative of the amalgamation of normative and psychological theories from geography, psychology, SCM and retailing science. Specifically, Expectation Disconfirmation Theory (EDT), Distributive Justice, Central Place Theory (CPT) Theories of Urban Impact (TUI) and Theory of Constraint (ToC) were the theories utilized in the study. For the achievement of the first objective which was to investigate the possible differential in the compliance rate between spatial pattern of fuel retail outlets in the core and peripheral zones of Ibadan metropolis, the first hypothesis of the study (which examined if there was no significant difference in the rate of compliance to the planning authority stipulations guiding the location pattern of petroleum product retail outlets between those located in the built up and xxiv peripheral zones of the city), was tested through the use of buffering and proximity analyses in the ArcMap environment of ArcGIS 10.1, while inferential statistical tool of an independent-samples t-test was conducted to compare the rate of compliance to the stipulations guiding the locations of these outlets in both the core and the peripheral zones. The result from the GIS analysis indicated that 33 (15.56%) out of the 220 outlets in the core zone of the metropolis complied with the planning stipulations guiding the location of fuel retail outlets. For the peripheral zone, out of the 220 fuel retail outlets 24 (10.90%) complied with the stipulations. The result from the t- test which was employed to test the hypothesis indicated that no significant difference existed in the rate of compliance t (263) =-2.66, p = 0.08 between fuel retail outlets in the core zone (M=3.9, SD=1.4) and peripheral zone (M=4.5, SD=1.79). The alternate hypothesis which stated that ―no significant difference existed in the compliance rate between fuel retail outlets located in the two zones‖ is accepted. For the achievement of the second objective of the study which was to analyze the factors which determine the location of fuel retail outlets both in the core and peripheral zones of Ibadan metropolis. All the managers/owners of the 432 fuel retail outlets in the metropolis were sampled out of which 256 questionnaires were retrieved for the purpose of this analysis. The breakdown of the socio-economic characteristics of the sampled respondents showed that the gender distribution showed that 194 (75.78%) of the respondents were males, while 64 (24.22 %) were females. The average age of the sampled population was 33.70 years. The mixed method was employed for the achievement of the second objective of this study. Logistic Regression Model (LRM) was employed to test the hypothesis and the result revealed that the inclusion of the independent variables in the model increased the overall level of it accuracy. The overall significance revealed that the Model Chi- xxv Square, derived from the likelihood fitted is also accurate (X2 = 43.47, df=5, p>.05). The model chi-square value of 43.47 (approximately 44% ) was significant. Thus, the indication is that the model has a good fit in predicting the possibility of a fuel retail outlet being located in the core or peripheral zone of the metropolis as determined by the explanatory variables (the independent variables accounted for about 44% of possible factors which determined whether a fuel retail outlets is located either within the core or peripheral zones of the metropolis. The remaining 56% are factors not considered in the study). The result gotten from the in depth interview sessions corroborated the findings from the tested hypothesis. The third objective was to examine the effects which the supply chain technique employed (either vertically integrated model or third-party arrangement) has on the achievement of efficient and effective distribution of the products. In order to achieve this objective, all the 389 registered members of Petroleum Tanker Drivers (PTD) association who are members of the PTD in the metropolis were sampled, 265 (around 70%) of the distributed questionnaires were retrieved and used for the analysis. In depth interview sessions were also conducted with three different managers of the three major conglomerates in the downstream sector of the Nigerian petroleum sector. The result of one-way between subjects (ANOVA) which was conducted to compare differences in the management and performances of haulage services outsourced to the 3PLS and those run under VIM showed that there was a significant effect of ownership type on management performance (F (2,262) = 60.26, p<.05). The null hypothesis was therefore rejected while the alternate hypothesis was accepted. The findings from the interview sessions posted similar results. The fourth and final objective was to analyze the effect that the socio-economic attributes of the participants (haulers and managers of retail outlets) involved in the distribution of xxvi petroleum products has on the safe, efficient and cost-effective distribution of product and this was done through the use of descriptive statistics, inferential statistics and incisive analysis of the interview sessions. A total number of 265 (70%) out of the 389 registered members of Petroleum Tanker Driver Association (PTDA) participated in the study. Multiple regression analysis (MRA) was used to test this hypothesis. The result from the statistical analysis show that the use of stimulant, work condition, marital status and educational attainment/literacy level have joint influence on compliance (R2 = 0.31, F (4,260) = 29.72, p<.05). On the basis of the foregoing, the hypothesis is thus accepted. The result from the interview sessions confirmed the existence of strong relationship between the explanatory variables and the hypothetical dependant variable. The study recommended a review of the planning processes guiding the establishment of fuel retail outlets. The study also advocated that retailers should endeavour to have stronger control over the supply chain of their products this could done by investing more in VIM rather than outsourcing such functions to 3PLs. This will help in better business performances. Government agencies in charge of monitoring drug abuse among haulers are advised to be more proactive by the duo of prevention and punishment strategies. This should include advocacy campaign against drug abuse. Different ranges of punishments should also be meted out for individual haulers found culpable.
- Full Text:
- Date Issued: 2019
Antidiabetic and toxicological properties of Dianthus thunbergii (Caryophyllaceae) roots and Hypoxis argentea (Hypoxidaceae) corms
- Authors: Akinrinde, Akinleye Stephen
- Date: 2017
- Subjects: Medicinal plants--South Africa--Eastern Cape Traditional medicine--South Africa--Eastern Cape Diabetics--Alternative treatment--South Africa
- Language: English
- Type: Thesis , Doctoral , Biochemistry
- Identifier: http://hdl.handle.net/10353/16036 , vital:40606
- Description: Diabetes mellitus is a chronic metabolic disorder primarily characterized by elevated blood glucose levels. Its rapidly increasing prevalence as a major non-communicable disease is now a growing concern for both developed and developing countries. The development of safe, cost-effective and pharmacologically-effective medications continues to a major challenge of antidiabetic management. Since most conventional antidiabetic drugs are costly and present with numerous adverse effects, alternatives are increasingly being sought from natural sources, most notably medicinal plants, as viable approaches to tackling the scourge of this disease. In the Eastern Cape Province of South Africa, the roots of Dianthus thunbergii and corms of Hypoxis argentea are frequently used traditionally for the treatment of diabetes mellitus, although no scientific evidence exists to validate their effectiveness for diabetes management. The studies conducted in the resent research were, therefore, aimed at investigating the antidiabetic and toxicological properties of these plants, in an attempt to providing data towards validating their use in traditional management of diabetes mellitus. Aqueous and ethanol extracts of the underground parts of D. thunbergii and H. argentea were initially subjected to analysis of their phytochemical composition, relative to standard compounds, and the nature of their in-vitro antioxidant activities using standard spectrophotometric methods. The potentials of these extracts for cytotoxicity and/or cell proliferation were evaluated using MTT assay in HepG2 cells and Crystal violet assay in INS-1 cells. These activities were further examined in INS-1 cells using live cell fluorescence imaging techniques. To evaluate the antidiabetic properties of the extracts, they were screened for their inhibitory effects on the activities of different enzymes including α-amylase, α-glucosidase, porcine pancreatic lipase, Dipeptidyl peptidase IV (DPP-IV), collagenase and the drug metabolizing enzyme, CYP3A4, while also assessing their effects on protein glycation using in- vitro visible and fluorescence spectrophotometric approaches. Cell culture procedures were carried out to evaluate the effects of the extracts on glucose utilization in HepG2 cells and L6 myotubes; nitric oxide production in RAW 264.7 macrophages; glucose metabolism in INS-1 cells, as well as triglyceride accumulation in 3T3-L1 pre-adipocytes. Furthermore, identification of compounds present in the aqueous and ethanol extracts was carried out by Liquid chromatography- Mass spectrometry (LC-MS), while volatile oils extracted from fresh and dried parts of the two plants by hydrodistillation were also analyzed by Gas chromatography-Mass spectrometry (GC-MS). The ethanol extracts of both D. thunbergii and H. argentea contained higher amounts of total phenols, flavonoids, tannins, proanthocyanidins and alkaloids, when compared with the aqueous extracts. This finding was in direct correlation with the antioxidant activities of the extracts, with the ethanol extracts of both plants demonstrating stronger scavenging activities against hydrogen peroxide, nitric oxide, ABTS and DPPH radicals, while also exhibiting higher ferric reducing antioxidant potentials, when compared with the aqueous extracts, and in some cases, the standard antioxidants, Vitamin C, butylated hydroxytoluene and rutin. The aqueous extracts of D. thunbergii exhibited the highest toxicity in HepG2 cells with IC50 < 50 μg/ml, while also producing a concentration-dependent reduction in the viability of INS-1 cells up to 41.81percent at 50 μg/ml. Both extracts of H. argentea, however, did not produce any significant toxicity in these cells. Fluorescence imaging of live INS-1 cells using Hoechst and propidium iodide staining revealed stimulation of cell proliferation by H. argentea, while the cytotoxicity of D. thunbergii was further confirmed. H. argentea caused stimulation of glucose uptake in HepG2 cells up to 119.58 percent at 100 μg/ml and as much as 116.96 percent in L6 myotubes at 50 μg/ml, without showing toxicity to these cells. D. thunbergii produced 18.39 percent increase in L6 glucose uptake above untreated control; although its effect on HepG2 glucose uptake was irrelevant as significant toxicity was produced in these cells. H. argentea produced a concentration-dependent reduction in nitric oxide production in RAW macrophages, although not as effectively as the positive control, aminoguanidine. Again, the toxicity of D. thunbergii to this cell line precludes the relevance of nitric oxide inhibition as an antidiabetic mechanism for this plant. D. thunbergii produced a concentration-dependent increase in 3T3-L1 triglyceride accumulation, as measured by Oil red O staining, compared to untreated cells, while H. argentea exerted no significant alterations in pre- adipocyte differentiation. Generally, the two plants produced weak inhibition of the activities of the various enzymes measured, suggesting that this mechanism may not play a major role in the activities of these plants as possible antidiabetic agents. GC-MS analysis revealed major differences in the volatile oil composition between fresh and dried plant parts for both plants. Most notably, total terpenoid content of D. thunbergii oils reduced significantly from 77.17 percent in the fresh root oil to 47.58 percent in the dried root oil. Total terpenoid content was much lower in H. argentea oils, but similarly reduced from 10.58 percent in the fresh corm oil to 4.00 percent in the dried corm oil. LC-MS analysis enabled the tentative identification of compounds including phenolic glycosides, flavonoids, alkaloids, terpenoids saponins and sapogenins, many of which have been reported in literature to exert bioactivities relevant to the ones elucidated in the present study. Overall, H. argentea exhibited antidiabetic properties that may be mediated by its stimulation of glucose uptake in HepG2 and L6 cells; stimulation of proliferation in INS-1 cells; lack of stimulation of 3T3-L1 triglyceride accumulation and a tendency to reduce nitric oxide production in RAW macrophages. These activities suggest that H. argentea has promise for further investigations as an antidiabetic agent. On the contrary, D. thunbergii exhibited significant toxicity to HepG2 cells, INS-1 cells and RAW macrophages. Its cytotoxicity at the concentrations investigated in the present studies raises significant concerns about any potential antidiabetic applications for this plant.
- Full Text:
- Date Issued: 2017
- Authors: Akinrinde, Akinleye Stephen
- Date: 2017
- Subjects: Medicinal plants--South Africa--Eastern Cape Traditional medicine--South Africa--Eastern Cape Diabetics--Alternative treatment--South Africa
- Language: English
- Type: Thesis , Doctoral , Biochemistry
- Identifier: http://hdl.handle.net/10353/16036 , vital:40606
- Description: Diabetes mellitus is a chronic metabolic disorder primarily characterized by elevated blood glucose levels. Its rapidly increasing prevalence as a major non-communicable disease is now a growing concern for both developed and developing countries. The development of safe, cost-effective and pharmacologically-effective medications continues to a major challenge of antidiabetic management. Since most conventional antidiabetic drugs are costly and present with numerous adverse effects, alternatives are increasingly being sought from natural sources, most notably medicinal plants, as viable approaches to tackling the scourge of this disease. In the Eastern Cape Province of South Africa, the roots of Dianthus thunbergii and corms of Hypoxis argentea are frequently used traditionally for the treatment of diabetes mellitus, although no scientific evidence exists to validate their effectiveness for diabetes management. The studies conducted in the resent research were, therefore, aimed at investigating the antidiabetic and toxicological properties of these plants, in an attempt to providing data towards validating their use in traditional management of diabetes mellitus. Aqueous and ethanol extracts of the underground parts of D. thunbergii and H. argentea were initially subjected to analysis of their phytochemical composition, relative to standard compounds, and the nature of their in-vitro antioxidant activities using standard spectrophotometric methods. The potentials of these extracts for cytotoxicity and/or cell proliferation were evaluated using MTT assay in HepG2 cells and Crystal violet assay in INS-1 cells. These activities were further examined in INS-1 cells using live cell fluorescence imaging techniques. To evaluate the antidiabetic properties of the extracts, they were screened for their inhibitory effects on the activities of different enzymes including α-amylase, α-glucosidase, porcine pancreatic lipase, Dipeptidyl peptidase IV (DPP-IV), collagenase and the drug metabolizing enzyme, CYP3A4, while also assessing their effects on protein glycation using in- vitro visible and fluorescence spectrophotometric approaches. Cell culture procedures were carried out to evaluate the effects of the extracts on glucose utilization in HepG2 cells and L6 myotubes; nitric oxide production in RAW 264.7 macrophages; glucose metabolism in INS-1 cells, as well as triglyceride accumulation in 3T3-L1 pre-adipocytes. Furthermore, identification of compounds present in the aqueous and ethanol extracts was carried out by Liquid chromatography- Mass spectrometry (LC-MS), while volatile oils extracted from fresh and dried parts of the two plants by hydrodistillation were also analyzed by Gas chromatography-Mass spectrometry (GC-MS). The ethanol extracts of both D. thunbergii and H. argentea contained higher amounts of total phenols, flavonoids, tannins, proanthocyanidins and alkaloids, when compared with the aqueous extracts. This finding was in direct correlation with the antioxidant activities of the extracts, with the ethanol extracts of both plants demonstrating stronger scavenging activities against hydrogen peroxide, nitric oxide, ABTS and DPPH radicals, while also exhibiting higher ferric reducing antioxidant potentials, when compared with the aqueous extracts, and in some cases, the standard antioxidants, Vitamin C, butylated hydroxytoluene and rutin. The aqueous extracts of D. thunbergii exhibited the highest toxicity in HepG2 cells with IC50 < 50 μg/ml, while also producing a concentration-dependent reduction in the viability of INS-1 cells up to 41.81percent at 50 μg/ml. Both extracts of H. argentea, however, did not produce any significant toxicity in these cells. Fluorescence imaging of live INS-1 cells using Hoechst and propidium iodide staining revealed stimulation of cell proliferation by H. argentea, while the cytotoxicity of D. thunbergii was further confirmed. H. argentea caused stimulation of glucose uptake in HepG2 cells up to 119.58 percent at 100 μg/ml and as much as 116.96 percent in L6 myotubes at 50 μg/ml, without showing toxicity to these cells. D. thunbergii produced 18.39 percent increase in L6 glucose uptake above untreated control; although its effect on HepG2 glucose uptake was irrelevant as significant toxicity was produced in these cells. H. argentea produced a concentration-dependent reduction in nitric oxide production in RAW macrophages, although not as effectively as the positive control, aminoguanidine. Again, the toxicity of D. thunbergii to this cell line precludes the relevance of nitric oxide inhibition as an antidiabetic mechanism for this plant. D. thunbergii produced a concentration-dependent increase in 3T3-L1 triglyceride accumulation, as measured by Oil red O staining, compared to untreated cells, while H. argentea exerted no significant alterations in pre- adipocyte differentiation. Generally, the two plants produced weak inhibition of the activities of the various enzymes measured, suggesting that this mechanism may not play a major role in the activities of these plants as possible antidiabetic agents. GC-MS analysis revealed major differences in the volatile oil composition between fresh and dried plant parts for both plants. Most notably, total terpenoid content of D. thunbergii oils reduced significantly from 77.17 percent in the fresh root oil to 47.58 percent in the dried root oil. Total terpenoid content was much lower in H. argentea oils, but similarly reduced from 10.58 percent in the fresh corm oil to 4.00 percent in the dried corm oil. LC-MS analysis enabled the tentative identification of compounds including phenolic glycosides, flavonoids, alkaloids, terpenoids saponins and sapogenins, many of which have been reported in literature to exert bioactivities relevant to the ones elucidated in the present study. Overall, H. argentea exhibited antidiabetic properties that may be mediated by its stimulation of glucose uptake in HepG2 and L6 cells; stimulation of proliferation in INS-1 cells; lack of stimulation of 3T3-L1 triglyceride accumulation and a tendency to reduce nitric oxide production in RAW macrophages. These activities suggest that H. argentea has promise for further investigations as an antidiabetic agent. On the contrary, D. thunbergii exhibited significant toxicity to HepG2 cells, INS-1 cells and RAW macrophages. Its cytotoxicity at the concentrations investigated in the present studies raises significant concerns about any potential antidiabetic applications for this plant.
- Full Text:
- Date Issued: 2017
Enhancing productivity and market participation for poverty reduction and shared prosperity in South Africa
- Authors: Avuletey, Richard
- Date: 2017
- Subjects: Poverty -- South Africa Economic development -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/13978 , vital:39736
- Description: There have been several attempts by the South Africa government to improve the agricultural productivity on smallholder farms since the end of apartheid. In spite of the government support, agricultural productivity has stagnated for several years across the Eastern Cape rural communities including Mthatha and Qamata. The aim of this study was to understand the roles played by irrigation adoption and market participation in addressing poverty reduction and shared prosperity levels of smallholder farmers in Eastern Cape of South Africa. Data were collected using purposive and random sampling approach through the use of the snowball method. To collect data, a questionnaire was designed and administered through face-to-face interviews. Overall, 200 farmers were interviewed both at Mthatha and Qamata irrigation scheme to represent the farmers in the area. The collected data were analysed using both parametric and non-parametric methods. The non-parametric methods used include descriptive analysis, estimation of gross margins as a proxy for profitability. The Stochastic Frontier Analysis (SFA), Binomial Logistic Regression (BLR), Ordinary Least Squares (OLS), tobit censored regression and propensity score matching (PSM) were the parametric methods used in the study. Profit efficiency was measured using the normalized transcendent logarithmic profit frontier approach (Cobb-douglas). Stochastic Production Frontier (SPF) technique was used to determine the technical efficiency of individual farmers and to identify the major factors that influence technical efficiency. Binomial logistic regression was used to determine factors affecting irrigation adoption and market participation among smallholder farmers. OLS was used to estimate the impact of institutional characteristics, socio-economic and agronomic factors on smallholder farmers’ level of market participation for selected crop enterprises. Lastly, tobit regression and propensity score matching (PSM) analyses were used to estimate the impact of irrigation technology adoption on poverty reduction in the province. The results of the descriptive statistics of the overall sample revealed an average age of 61 years, and mean household size of 4.6 persons with majority of the household head having at least obtained some primary school education (59.5percent). Most of the household heads interviewed were men (68.5percent). Most farmers are single (65percent) with regard to their marital status. Farming is viewed as major source of livelihood for smallholders with an average income of R12523.37 for overall sample and income of R15559.80 and R5795.59 per crop season, respectively, for irrigators and non irrigators. Smallholder irrigators generated a higher gross margin of R7585.26, R21966.89 and R6266.07 from maize, cabbage and potato enterprises, respectively, compared to their non irrigator counterparts in maize (R131.39), cabbage (R10938.04) and potato (R3433.31) enterprises. The results of the frontier profit model revealed mean profit efficiency of 90percent, 99.99percent and 99.99percent, respectively, for maize, cabbage and potato.The binary logistic regression model for irrigation adoption indicated that years in school, cooperative membership, off-farm income, credit access and distance to market significantly explain smallholder farmers’ irrigation adoption decision. On the other hand, age of household head, market support, farm size, livestock income and distance to market were the key variables that accounted for smallholder farmers’ market participation adoption behaviour. The findings from the stochastic production frontier (SPF) indicate that smallholder farmers are technically efficient in maize and cabbage enterprises both at 99.99percent. Lastly, the findings from the Tobit regression and propensity score matching are consistent across the two methods, suggesting that being a member of irrigation adoption has a positive significant impact on income of smallholder farmers. Irrigation and market participation appear to have a significant and positive impact on smallholder poverty reduction (measured by crop income) for those farmers engaged in them. The findings from this study provide useful practical insights for policy makers, farm advisers and researchers in the design of effective and efficient policies, programmes and projects which can affect the adoption of irrigation technology and market participation.
- Full Text:
- Date Issued: 2017
- Authors: Avuletey, Richard
- Date: 2017
- Subjects: Poverty -- South Africa Economic development -- South Africa
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/13978 , vital:39736
- Description: There have been several attempts by the South Africa government to improve the agricultural productivity on smallholder farms since the end of apartheid. In spite of the government support, agricultural productivity has stagnated for several years across the Eastern Cape rural communities including Mthatha and Qamata. The aim of this study was to understand the roles played by irrigation adoption and market participation in addressing poverty reduction and shared prosperity levels of smallholder farmers in Eastern Cape of South Africa. Data were collected using purposive and random sampling approach through the use of the snowball method. To collect data, a questionnaire was designed and administered through face-to-face interviews. Overall, 200 farmers were interviewed both at Mthatha and Qamata irrigation scheme to represent the farmers in the area. The collected data were analysed using both parametric and non-parametric methods. The non-parametric methods used include descriptive analysis, estimation of gross margins as a proxy for profitability. The Stochastic Frontier Analysis (SFA), Binomial Logistic Regression (BLR), Ordinary Least Squares (OLS), tobit censored regression and propensity score matching (PSM) were the parametric methods used in the study. Profit efficiency was measured using the normalized transcendent logarithmic profit frontier approach (Cobb-douglas). Stochastic Production Frontier (SPF) technique was used to determine the technical efficiency of individual farmers and to identify the major factors that influence technical efficiency. Binomial logistic regression was used to determine factors affecting irrigation adoption and market participation among smallholder farmers. OLS was used to estimate the impact of institutional characteristics, socio-economic and agronomic factors on smallholder farmers’ level of market participation for selected crop enterprises. Lastly, tobit regression and propensity score matching (PSM) analyses were used to estimate the impact of irrigation technology adoption on poverty reduction in the province. The results of the descriptive statistics of the overall sample revealed an average age of 61 years, and mean household size of 4.6 persons with majority of the household head having at least obtained some primary school education (59.5percent). Most of the household heads interviewed were men (68.5percent). Most farmers are single (65percent) with regard to their marital status. Farming is viewed as major source of livelihood for smallholders with an average income of R12523.37 for overall sample and income of R15559.80 and R5795.59 per crop season, respectively, for irrigators and non irrigators. Smallholder irrigators generated a higher gross margin of R7585.26, R21966.89 and R6266.07 from maize, cabbage and potato enterprises, respectively, compared to their non irrigator counterparts in maize (R131.39), cabbage (R10938.04) and potato (R3433.31) enterprises. The results of the frontier profit model revealed mean profit efficiency of 90percent, 99.99percent and 99.99percent, respectively, for maize, cabbage and potato.The binary logistic regression model for irrigation adoption indicated that years in school, cooperative membership, off-farm income, credit access and distance to market significantly explain smallholder farmers’ irrigation adoption decision. On the other hand, age of household head, market support, farm size, livestock income and distance to market were the key variables that accounted for smallholder farmers’ market participation adoption behaviour. The findings from the stochastic production frontier (SPF) indicate that smallholder farmers are technically efficient in maize and cabbage enterprises both at 99.99percent. Lastly, the findings from the Tobit regression and propensity score matching are consistent across the two methods, suggesting that being a member of irrigation adoption has a positive significant impact on income of smallholder farmers. Irrigation and market participation appear to have a significant and positive impact on smallholder poverty reduction (measured by crop income) for those farmers engaged in them. The findings from this study provide useful practical insights for policy makers, farm advisers and researchers in the design of effective and efficient policies, programmes and projects which can affect the adoption of irrigation technology and market participation.
- Full Text:
- Date Issued: 2017
Molecular epidemiology of vibrio pathogens in selected surface waters and treated final effluents of wastewater treatment plants in Chris Hani District Municipality in the Eastern Cape Province, South Africa
- Authors: Ayodeji, Onsula Charles
- Date: 2018
- Subjects: Sewage disposal plants Sewage -- Purification Water -- Purification -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , Microbiology
- Identifier: http://hdl.handle.net/10353/10464 , vital:35478
- Description: Access to clean and safe water is essential for the survival of human beings. Nevertheless pollution from wastewater treatment plants (WWTPs) effluents often impacts the microbiological qualities of surface waters. Availability of freshwater resources is indispensable for preventing waterborne diseases. The current study evaluated the physicochemical properties and abundance of Vibrio species in selected rivers and WWTPs in the Eastern Cape Province of South Africa, over a one year sampling regime (December, 2016 to November, 2017). Water samples were collected monthly at designated locations along the banks of two rivers, treated effluents from 500 m upstream and downstream discharge points of two WWTPs and examined for physicochemical qualities, prevalence of Vibrio pathogens and their antibiogram profiles using both cultural and molecular techniques. The findings reveal the qualities of Tsomo and Great Fish river qualities with respect to electrical conductivity (EC) (137.75 – 377.69 mg/l), total suspended solids (TSS) (52.00 – 725.19 mg/l) and temperature (12.7 – 23 oC) and the treated effluents of WW-AD and WW-CR WWTPs with respect to EC (525.73 – 1071.89 mg/l), free chlorine (0.00 mg/l – 0.68 mg/l), temperature (12.4 – 28.8 oC), TSS (14.67 – 276.44 mg/l) exceeds the permissible limits set for effluent discharged to freshwater by South Africa guidelines. Other physicochemical qualities such as turbidity (63.11 – 797.17 NTU), BOD (3.30 – 5.26 mg/l) and TDS (68.88 – 148.14 mg/l) for Tsomo and Great Fish river and turbidity (20.33 – 310 NTU), biological oxygen demand (BOD) (1.28 – 4.96 mg/l), and total dissolve solid (TDS) (262.89 – 534.89 mg/l) for WWTPs WW-AD and WW-CR did not comply with WHO and EU standards as no regulation is set for them in the South African guidelines for domestic water usage. Statistical analysis revealed that pH, electrical conductivities, dissolved oxygen and total dissolved solid were significantly different whereas temperature did not differ significantly with respect to the four seasons (P < 0.05). The Vibrio densities for Great Fish river ranged between 0 and 3.29 log10 CFU/ml with the highest obtained in the spring. The Tsomo River Vibrio densities varied between 0 to 3.56 log10 CFU/ml and the maximum densities recorded during summer. The presumptive Vibrio densities in WW-AD and WW-CR WWTPs ranged from 0 to 3.67 log10 CFU/ml and 0 to 4.42 log10 CFU/ml with autumn and spring having the highest loads respectively. Molecular identification of the presumptive Vibrio species revealed 424 positive for the Vibrio genus. Of these, 21.69 percent, 11.79 percent, 8.25 percent and 2.12 percent were confirmed as V. cholerae, V. mimicus, V. parahaemolyticus and V. fluvialis respectively. The presence of potentially Vibrio pathogens in the rivers and treated effluents suggests potential public health threat to the communities relying on receiving watersheds where the effluents are discharged. Results of antibiotic sensitivity testing revealed high sensitivities against Ofloxacin (85.54 percent), Cefuroxime (81.93 percent), and Ciprofloxacin (74.70 percent), whereas resistance against other antibiotics follow this order: Imipenem (42.17 percent), Amoxicillin-Clavulanic Acid (54.17 percent), Ampicillin (63.54 percent), Nitrofurantoin (71.79 percent) and Polymyxin B (97.44 percent). Surprisingly, the resistance of Vibrio species against the known effective Carbapenems was relatively high (Meropenem (38.54 percent) and Imipenem (58.88 percent). Multiple antibiotic resistance phenotypes (MARP) of the isolates were resistant to two or more antibiotics whereas the calculated multiple antibiotic resistance index (MARI) ranged from 0.2 to 0.7. The observed high multiple antibiotics index suggest the recovered Vibrio pathogens are of high antimicrobial usage origin. Increase in antimicrobial resistance profiles towards conventionally used antibiotics as indicated in this study calls for adequate sanitation facilities and proper surveillance programs towards monitoring of antimicrobial resistance determinants in wastewater treatment effluents and receiving watersheds. This will in turn enhance early detection of resistant strains of public health importance, and supports the prompt notification and investigation of outbreaks. It further advocates the need for constant monitoring programme by the relevant regulatory agencies to ensure total compliance of the wastewater treatment facilities to the stipulated standards.
- Full Text:
- Date Issued: 2018
- Authors: Ayodeji, Onsula Charles
- Date: 2018
- Subjects: Sewage disposal plants Sewage -- Purification Water -- Purification -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , Microbiology
- Identifier: http://hdl.handle.net/10353/10464 , vital:35478
- Description: Access to clean and safe water is essential for the survival of human beings. Nevertheless pollution from wastewater treatment plants (WWTPs) effluents often impacts the microbiological qualities of surface waters. Availability of freshwater resources is indispensable for preventing waterborne diseases. The current study evaluated the physicochemical properties and abundance of Vibrio species in selected rivers and WWTPs in the Eastern Cape Province of South Africa, over a one year sampling regime (December, 2016 to November, 2017). Water samples were collected monthly at designated locations along the banks of two rivers, treated effluents from 500 m upstream and downstream discharge points of two WWTPs and examined for physicochemical qualities, prevalence of Vibrio pathogens and their antibiogram profiles using both cultural and molecular techniques. The findings reveal the qualities of Tsomo and Great Fish river qualities with respect to electrical conductivity (EC) (137.75 – 377.69 mg/l), total suspended solids (TSS) (52.00 – 725.19 mg/l) and temperature (12.7 – 23 oC) and the treated effluents of WW-AD and WW-CR WWTPs with respect to EC (525.73 – 1071.89 mg/l), free chlorine (0.00 mg/l – 0.68 mg/l), temperature (12.4 – 28.8 oC), TSS (14.67 – 276.44 mg/l) exceeds the permissible limits set for effluent discharged to freshwater by South Africa guidelines. Other physicochemical qualities such as turbidity (63.11 – 797.17 NTU), BOD (3.30 – 5.26 mg/l) and TDS (68.88 – 148.14 mg/l) for Tsomo and Great Fish river and turbidity (20.33 – 310 NTU), biological oxygen demand (BOD) (1.28 – 4.96 mg/l), and total dissolve solid (TDS) (262.89 – 534.89 mg/l) for WWTPs WW-AD and WW-CR did not comply with WHO and EU standards as no regulation is set for them in the South African guidelines for domestic water usage. Statistical analysis revealed that pH, electrical conductivities, dissolved oxygen and total dissolved solid were significantly different whereas temperature did not differ significantly with respect to the four seasons (P < 0.05). The Vibrio densities for Great Fish river ranged between 0 and 3.29 log10 CFU/ml with the highest obtained in the spring. The Tsomo River Vibrio densities varied between 0 to 3.56 log10 CFU/ml and the maximum densities recorded during summer. The presumptive Vibrio densities in WW-AD and WW-CR WWTPs ranged from 0 to 3.67 log10 CFU/ml and 0 to 4.42 log10 CFU/ml with autumn and spring having the highest loads respectively. Molecular identification of the presumptive Vibrio species revealed 424 positive for the Vibrio genus. Of these, 21.69 percent, 11.79 percent, 8.25 percent and 2.12 percent were confirmed as V. cholerae, V. mimicus, V. parahaemolyticus and V. fluvialis respectively. The presence of potentially Vibrio pathogens in the rivers and treated effluents suggests potential public health threat to the communities relying on receiving watersheds where the effluents are discharged. Results of antibiotic sensitivity testing revealed high sensitivities against Ofloxacin (85.54 percent), Cefuroxime (81.93 percent), and Ciprofloxacin (74.70 percent), whereas resistance against other antibiotics follow this order: Imipenem (42.17 percent), Amoxicillin-Clavulanic Acid (54.17 percent), Ampicillin (63.54 percent), Nitrofurantoin (71.79 percent) and Polymyxin B (97.44 percent). Surprisingly, the resistance of Vibrio species against the known effective Carbapenems was relatively high (Meropenem (38.54 percent) and Imipenem (58.88 percent). Multiple antibiotic resistance phenotypes (MARP) of the isolates were resistant to two or more antibiotics whereas the calculated multiple antibiotic resistance index (MARI) ranged from 0.2 to 0.7. The observed high multiple antibiotics index suggest the recovered Vibrio pathogens are of high antimicrobial usage origin. Increase in antimicrobial resistance profiles towards conventionally used antibiotics as indicated in this study calls for adequate sanitation facilities and proper surveillance programs towards monitoring of antimicrobial resistance determinants in wastewater treatment effluents and receiving watersheds. This will in turn enhance early detection of resistant strains of public health importance, and supports the prompt notification and investigation of outbreaks. It further advocates the need for constant monitoring programme by the relevant regulatory agencies to ensure total compliance of the wastewater treatment facilities to the stipulated standards.
- Full Text:
- Date Issued: 2018
Joint Modelling Inference for Longitudinal and Time To Event Data with Application to Biomarkers in Medical and Clinical Studies
- Authors: Azeez, Adeboye Nurudeen
- Date: 2020
- Subjects: Biochemical markers Bayesian statistical decision theory
- Language: English
- Type: Thesis , Doctoral , PhD (Biostatistics)
- Identifier: http://hdl.handle.net/10353/18476 , vital:42543
- Description: In the past couple of decades, longitudinal and survival data analysis have emerged as important and popular concepts of biostatistics and statistics for disease modelling. In recent years, these two statistics concepts have been combined to develop a joint model for longitudinal and survival data analysis. The Joint model is a simultaneous modelling application of longitudinal and survival data while taking into account a possible association between them. In this thesis, three sub-topics (Conditional score approach, estimating equation approach, and modified Cholesky decomposition approach) are utilised to model the association if the independence assumption is violated. Using the conditional score approach, the study investigated the association between longitudinal covariates and the time-to-event process to examine the within-subject measurement error that could influence estimation when the assumption of normality and mutual independence is violated. Given the assumption violation, I proposed an estimating equation approach based on the conditional score to relax parametric distributional assumptions for repeated measures of random effects. I jointly modelled the time-dependent biomarkers and event times using the Cox model with intermittent time-dependent covariates measure, in which the longitudinal model was used to characterize the biomarker underlying (unobservable) trajectory and incorporated as a latent time-dependent covariate in the survival model to predict failure times. Estimates of the parameters were obtained by a restricted maximum likelihood estimate (REML). A modified Cholesky decomposition method was used to capture the within-subject covariance for a positive definite and symmetric matrix, with the assumption that the observed data from different subjects are independent. I illustrated the proposed method by a real data set from a lung study and simulation. An extension to the joint model of longitudinal-survival data was also proposed, in which the longitudinal data has a cumulative and weighted effect on the hazard event function. Using a Bayesian parametric method, I proposed a skewed weighted probability density function to estimate the parameters. The weighted cumulative effect used enabled different longitudinal profiles to be incorporated over time in calculating the hazard ratio between the subjects. The proposed functions provide greater flexibility for modelling the association structure of different longitudinal and survival sub-model. The focus was on the association between the biomarker (serum creatinine, sCr) and the development of end-stage renal disease (ESRD). Since the effect of sCr biomarker is anticipated to be a cumulative effect, with the development of sCr biomarker over time leading to progressively higher damage of the kidney. The approach was applied a simulation for validation of the proposed method
- Full Text:
- Date Issued: 2020
- Authors: Azeez, Adeboye Nurudeen
- Date: 2020
- Subjects: Biochemical markers Bayesian statistical decision theory
- Language: English
- Type: Thesis , Doctoral , PhD (Biostatistics)
- Identifier: http://hdl.handle.net/10353/18476 , vital:42543
- Description: In the past couple of decades, longitudinal and survival data analysis have emerged as important and popular concepts of biostatistics and statistics for disease modelling. In recent years, these two statistics concepts have been combined to develop a joint model for longitudinal and survival data analysis. The Joint model is a simultaneous modelling application of longitudinal and survival data while taking into account a possible association between them. In this thesis, three sub-topics (Conditional score approach, estimating equation approach, and modified Cholesky decomposition approach) are utilised to model the association if the independence assumption is violated. Using the conditional score approach, the study investigated the association between longitudinal covariates and the time-to-event process to examine the within-subject measurement error that could influence estimation when the assumption of normality and mutual independence is violated. Given the assumption violation, I proposed an estimating equation approach based on the conditional score to relax parametric distributional assumptions for repeated measures of random effects. I jointly modelled the time-dependent biomarkers and event times using the Cox model with intermittent time-dependent covariates measure, in which the longitudinal model was used to characterize the biomarker underlying (unobservable) trajectory and incorporated as a latent time-dependent covariate in the survival model to predict failure times. Estimates of the parameters were obtained by a restricted maximum likelihood estimate (REML). A modified Cholesky decomposition method was used to capture the within-subject covariance for a positive definite and symmetric matrix, with the assumption that the observed data from different subjects are independent. I illustrated the proposed method by a real data set from a lung study and simulation. An extension to the joint model of longitudinal-survival data was also proposed, in which the longitudinal data has a cumulative and weighted effect on the hazard event function. Using a Bayesian parametric method, I proposed a skewed weighted probability density function to estimate the parameters. The weighted cumulative effect used enabled different longitudinal profiles to be incorporated over time in calculating the hazard ratio between the subjects. The proposed functions provide greater flexibility for modelling the association structure of different longitudinal and survival sub-model. The focus was on the association between the biomarker (serum creatinine, sCr) and the development of end-stage renal disease (ESRD). Since the effect of sCr biomarker is anticipated to be a cumulative effect, with the development of sCr biomarker over time leading to progressively higher damage of the kidney. The approach was applied a simulation for validation of the proposed method
- Full Text:
- Date Issued: 2020
Molecular characterization of Mycobacterium bovis isolated from cattle and sputum specimens from humans in the Eastern Cape province, South Africa : public health and economic implication
- Authors: Bhembe, Nolwazi Londiwe
- Date: 2016
- Subjects: Mycobacterium tuberculosis -- South Africa -- Eastern Cape Public health -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/13238 , vital:39625
- Description: Tuberculosis (TB) is a disease caused by the members of the Mycobacterium tuberculosis complex (MTBC), which infects both animals and humans. The primary host of Mycobacterium bovis is cattle. It remains a major global health problem. About 2 billion people are thought to be infected with TB and about 1.3 million decease each year from the disease. This study is aimed at determining the prevalence of the disease, characterizing the MTBC isolates and increasing the understanding of the genetic diversity MTBC in the Eastern Cape Province of South Africa, from studying both samples from both humans and cattle. A total of 376 cattle lymph nodes were collected from two commercial abattoirs for investigations. Suspected 6 000 sputum specimens were also collected from humans (cattle farmers). All collected samples were cultured, and isolates were confirmed with a multiplex polymerase chain reaction (PCR) targeting the mpb64 and IS6110 genes. Positive isolates were tested for resistance against anti-TB drugs using the standard Lowenstein Jensen proportion method. Isolates from cattle lymph nodes were further characterized to species level, using the region of deletion 1 (RD1) and oxyR restriction fragment length polymorphism analyses. MIRU-VNTR typing and spoligotyping assays were used to further examine the genetic diversity of all strains. Obtained spoligotype patterns were matched with isolates published in the universal spoligotyping database (SITVIT2). MTBC was detected in 162 (43.09 percent) cattle lymph nodes and 156 sputum specimens. Some isolates 25.9 percent (42/162) from the cattle lymph nodes samples were resistant to rifampicin (RIF) and 98.7 percent (154/156) were resistant to isoniazid (INH) and rifampicin (RIF) (of the human sputum specimens). All cattle lymph nodes isolates exhibited the RD1 gene, and the oxyR analyses classified 96.9 percent of the isolates as Mycobacterium tuberculosis complex and 3.1 percent as Mycobacterium bovis. Twenty seven spoligotype patterns were isolated from cattle lymph nodes, with 10 shared types (SIT) consigned to 5 lineages, including Bov_4-Caprea (1.9 percent), Microti (0.6 percent) and Beijing (17.9 percent) constituting East Asian, Latin-American-Mediterranean (LAM) (3.7 percent), X (4.3 percent), MANU (3.1percent), S (0.6 percent) and 67.9 percent were orphans that were further categorized to their designated lineages (Indo-Oceanic, Euro-American and West-African 2). Ninety one percent of the isolates from humans (farmers) were grouped into 7 clusters by spoligotyping, while the remaining 9 percent was unclustered. SITs were observed in 89.6 percent of the isolates from the Beijing, LAM, X, T and S families. The Beijing family was the most prevalent strain from both human isolates (77.2 percent) and cattle lymph nodes isolates (17.9 percent), and the T (0.6 percent) and Microti (0.6 percent) families were the least detected genotypes in both humans and cattle lymph nodes. In the cattle lymph nodes, spoligotyping showed a higher clustering rate of 82.1 percent, with the lowest (HGDI) = 0.485. The 12 MIRU-VNTR clustering rate was 64.8 percent, showing a higher HGDI of 0.671. However, a combination of both methods showed a decreased clustering rate of 53.7 percent; however these methods resulted in a higher HGDI (0.676). Isolates from human sputum specimens spoligotyping showed a higher clustering rate of 89 percent with an HGDI = 0.822. The 12 MIRU-VNTR showed the lowest clustering rate of 69 percent and an HGDI = 0.940 and the combination of the methods showed a clustering rate of 78 percent and an HGDI = 0.951. The results of this study show the diversity of MTBC strains in the Eastern Cape Province and the low clustering rate indicates continuing transmission in the province. The detection of MTBC strains from slaughtered cattle lymph nodes in abattoirs confirms the risk of providing TB infected meat in markets which has serious implications for the control of TB in South Africa. The continuing spread of MTBC in South Africa threatens both the public and economic health.
- Full Text:
- Date Issued: 2016
- Authors: Bhembe, Nolwazi Londiwe
- Date: 2016
- Subjects: Mycobacterium tuberculosis -- South Africa -- Eastern Cape Public health -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/13238 , vital:39625
- Description: Tuberculosis (TB) is a disease caused by the members of the Mycobacterium tuberculosis complex (MTBC), which infects both animals and humans. The primary host of Mycobacterium bovis is cattle. It remains a major global health problem. About 2 billion people are thought to be infected with TB and about 1.3 million decease each year from the disease. This study is aimed at determining the prevalence of the disease, characterizing the MTBC isolates and increasing the understanding of the genetic diversity MTBC in the Eastern Cape Province of South Africa, from studying both samples from both humans and cattle. A total of 376 cattle lymph nodes were collected from two commercial abattoirs for investigations. Suspected 6 000 sputum specimens were also collected from humans (cattle farmers). All collected samples were cultured, and isolates were confirmed with a multiplex polymerase chain reaction (PCR) targeting the mpb64 and IS6110 genes. Positive isolates were tested for resistance against anti-TB drugs using the standard Lowenstein Jensen proportion method. Isolates from cattle lymph nodes were further characterized to species level, using the region of deletion 1 (RD1) and oxyR restriction fragment length polymorphism analyses. MIRU-VNTR typing and spoligotyping assays were used to further examine the genetic diversity of all strains. Obtained spoligotype patterns were matched with isolates published in the universal spoligotyping database (SITVIT2). MTBC was detected in 162 (43.09 percent) cattle lymph nodes and 156 sputum specimens. Some isolates 25.9 percent (42/162) from the cattle lymph nodes samples were resistant to rifampicin (RIF) and 98.7 percent (154/156) were resistant to isoniazid (INH) and rifampicin (RIF) (of the human sputum specimens). All cattle lymph nodes isolates exhibited the RD1 gene, and the oxyR analyses classified 96.9 percent of the isolates as Mycobacterium tuberculosis complex and 3.1 percent as Mycobacterium bovis. Twenty seven spoligotype patterns were isolated from cattle lymph nodes, with 10 shared types (SIT) consigned to 5 lineages, including Bov_4-Caprea (1.9 percent), Microti (0.6 percent) and Beijing (17.9 percent) constituting East Asian, Latin-American-Mediterranean (LAM) (3.7 percent), X (4.3 percent), MANU (3.1percent), S (0.6 percent) and 67.9 percent were orphans that were further categorized to their designated lineages (Indo-Oceanic, Euro-American and West-African 2). Ninety one percent of the isolates from humans (farmers) were grouped into 7 clusters by spoligotyping, while the remaining 9 percent was unclustered. SITs were observed in 89.6 percent of the isolates from the Beijing, LAM, X, T and S families. The Beijing family was the most prevalent strain from both human isolates (77.2 percent) and cattle lymph nodes isolates (17.9 percent), and the T (0.6 percent) and Microti (0.6 percent) families were the least detected genotypes in both humans and cattle lymph nodes. In the cattle lymph nodes, spoligotyping showed a higher clustering rate of 82.1 percent, with the lowest (HGDI) = 0.485. The 12 MIRU-VNTR clustering rate was 64.8 percent, showing a higher HGDI of 0.671. However, a combination of both methods showed a decreased clustering rate of 53.7 percent; however these methods resulted in a higher HGDI (0.676). Isolates from human sputum specimens spoligotyping showed a higher clustering rate of 89 percent with an HGDI = 0.822. The 12 MIRU-VNTR showed the lowest clustering rate of 69 percent and an HGDI = 0.940 and the combination of the methods showed a clustering rate of 78 percent and an HGDI = 0.951. The results of this study show the diversity of MTBC strains in the Eastern Cape Province and the low clustering rate indicates continuing transmission in the province. The detection of MTBC strains from slaughtered cattle lymph nodes in abattoirs confirms the risk of providing TB infected meat in markets which has serious implications for the control of TB in South Africa. The continuing spread of MTBC in South Africa threatens both the public and economic health.
- Full Text:
- Date Issued: 2016
Adaptive responses to heat stress, quality of hide and meat from indigenous Nguni and non-descript crossbred cattle
- Authors: Chikwanda, Denice
- Date: 2016
- Subjects: Cattle -- Effect of temperature on Nguni cattle Beef cattle breeds
- Language: English
- Type: Thesis , Doctoral , PhD (Agriculture)
- Identifier: http://hdl.handle.net/10353/10614 , vital:35635
- Description: The main objective of this study was to determine the adaptive responses of Nguni and non-descript crossbred cattle (NDCC) to heat stress, nutritionally-related blood metabolite profiles, fatty acid profiles, carcass and meat characteristics, physico-mechanical properties of automotive upholstery crust leather and the associated collagen fibre architecture of hides and crust leather. Forty steers (20 Nguni and 20 NDCC) which were approximately 14 months of age with live weights ranging between 153 kg and 203 kg at the beginning of the study were used. Environmental variables (ambient temperature, relative humidity, wind parameters, solar radiation) were collected from a weather station at the research farm. Temperature-humidity index (THI) values were computed. Rectal and skin temperature, skin traits and blood metabolites were determined at two-week intervals over 16 weeks. Hair coat scores ranged from extremely short (score 1) to very woolly (score 7). At slaughter, blood samples were collected after exsanguination. Meat samples were collected from the right muscularis longissimus thoracis et lumborum (LTL) and Triceps brachii (TB) muscles after 24 hours of chilling of carcasses for physico-chemical quality tests. Fatty acid profiles and physico-chemical quality of meat were determined on the LTL and TB. An additional fifty-four hides (27 Nguni and 27 NDCC) were obtained from a commercial abattoir at slaughter. The hides were tanned into automotive crust leather and tested for physico-mechanical quality. Results showed that week and environmental variables affected skin temperature; also, the rectal and skin temperatures were negatively correlated to body condition, skin pigment, coat score and skin thickness. Non-descript crossbred cattle had higher coat scores (2.1 ± 0.36 to 4.1 ± 4.20) than Nguni cattle (1.6 ± 0.36 to 4.1 ± 0.36). Body condition scores, blood creatinine, urea, total protein, albumin and globulin were affected by genotype and week of sampling. At the end of the trial, NDCC had higher slaughter and hide weights (285.9 ± 6.52 kg and 18.4 ± 0.54 kg, respectively) than Nguni cattle (232.6 ± 6.5 kg and 14.7 ± 0.54 kg, respectively). The majority of NDCC carcasses (73.7 percent) had a fatness level of 1 compared to Nguni carcasses (50 percent). Intramuscular fat was higher in Nguni (1.8 ± 0.09 percent) compared to NDCC (1.5 ± 0.09 percent) steers. Nguni steers had darker muscle colour (L*=33.6 ± 0.01) than NDCC (L*= 35.7 ± 0.54). Nguni and NDCC had similar thawing loss, cooking loss, WBSF tenderness, fat-free dry matter, moisture content, fatty acid profiles and health-related lipid indices. Ultimate muscle pH, meat colour and chroma were similar in the LTL and TB. Concerning the skin, Nguni and NDCC had similar physico-mechanical properties. However, breaking load and tensile strength were higher (1257.1 ± 70.72 N and 28.3 ± 1.23 MPa) in samples taken parallel to the backbone compared to that taken perpendicular to the backbone (979.5 ±70.72 N and 23.6 ±1.23MPa) across the two genotypes. Non-descript crossbred crust leather varied in physico-mechanical tests by direction of sampling. Collagen fibre orientation in hides and crust samples also varied between longitudinal and cross-sections. Collagen fibre diameters in the Nguni were similar in longitudinal and cross-sections (3.4 ± 0.12 μm and 3.2 ± 0.11 μm, respectively). From this study, it is concluded that THI, hair coat, skin traits and body condition affect skin temperature, but not rectal temperature, cortisol and CK activity in Nguni and NDCC reared extensively. The two genotypes differ in nutritionally-related blood metabolites, growth performance, hide weights and carcass traits. Beef from Nguni and NDCC differs in the IMF and meat lightness but is similar in the meat fatty acid composition and some physico-chemical quality parameters. Automotive crust leathers from the two genotypes were similar in some physico-mechanical properties. Collagen architecture varied among different regions of hides and crust leathers
- Full Text:
- Date Issued: 2016
- Authors: Chikwanda, Denice
- Date: 2016
- Subjects: Cattle -- Effect of temperature on Nguni cattle Beef cattle breeds
- Language: English
- Type: Thesis , Doctoral , PhD (Agriculture)
- Identifier: http://hdl.handle.net/10353/10614 , vital:35635
- Description: The main objective of this study was to determine the adaptive responses of Nguni and non-descript crossbred cattle (NDCC) to heat stress, nutritionally-related blood metabolite profiles, fatty acid profiles, carcass and meat characteristics, physico-mechanical properties of automotive upholstery crust leather and the associated collagen fibre architecture of hides and crust leather. Forty steers (20 Nguni and 20 NDCC) which were approximately 14 months of age with live weights ranging between 153 kg and 203 kg at the beginning of the study were used. Environmental variables (ambient temperature, relative humidity, wind parameters, solar radiation) were collected from a weather station at the research farm. Temperature-humidity index (THI) values were computed. Rectal and skin temperature, skin traits and blood metabolites were determined at two-week intervals over 16 weeks. Hair coat scores ranged from extremely short (score 1) to very woolly (score 7). At slaughter, blood samples were collected after exsanguination. Meat samples were collected from the right muscularis longissimus thoracis et lumborum (LTL) and Triceps brachii (TB) muscles after 24 hours of chilling of carcasses for physico-chemical quality tests. Fatty acid profiles and physico-chemical quality of meat were determined on the LTL and TB. An additional fifty-four hides (27 Nguni and 27 NDCC) were obtained from a commercial abattoir at slaughter. The hides were tanned into automotive crust leather and tested for physico-mechanical quality. Results showed that week and environmental variables affected skin temperature; also, the rectal and skin temperatures were negatively correlated to body condition, skin pigment, coat score and skin thickness. Non-descript crossbred cattle had higher coat scores (2.1 ± 0.36 to 4.1 ± 4.20) than Nguni cattle (1.6 ± 0.36 to 4.1 ± 0.36). Body condition scores, blood creatinine, urea, total protein, albumin and globulin were affected by genotype and week of sampling. At the end of the trial, NDCC had higher slaughter and hide weights (285.9 ± 6.52 kg and 18.4 ± 0.54 kg, respectively) than Nguni cattle (232.6 ± 6.5 kg and 14.7 ± 0.54 kg, respectively). The majority of NDCC carcasses (73.7 percent) had a fatness level of 1 compared to Nguni carcasses (50 percent). Intramuscular fat was higher in Nguni (1.8 ± 0.09 percent) compared to NDCC (1.5 ± 0.09 percent) steers. Nguni steers had darker muscle colour (L*=33.6 ± 0.01) than NDCC (L*= 35.7 ± 0.54). Nguni and NDCC had similar thawing loss, cooking loss, WBSF tenderness, fat-free dry matter, moisture content, fatty acid profiles and health-related lipid indices. Ultimate muscle pH, meat colour and chroma were similar in the LTL and TB. Concerning the skin, Nguni and NDCC had similar physico-mechanical properties. However, breaking load and tensile strength were higher (1257.1 ± 70.72 N and 28.3 ± 1.23 MPa) in samples taken parallel to the backbone compared to that taken perpendicular to the backbone (979.5 ±70.72 N and 23.6 ±1.23MPa) across the two genotypes. Non-descript crossbred crust leather varied in physico-mechanical tests by direction of sampling. Collagen fibre orientation in hides and crust samples also varied between longitudinal and cross-sections. Collagen fibre diameters in the Nguni were similar in longitudinal and cross-sections (3.4 ± 0.12 μm and 3.2 ± 0.11 μm, respectively). From this study, it is concluded that THI, hair coat, skin traits and body condition affect skin temperature, but not rectal temperature, cortisol and CK activity in Nguni and NDCC reared extensively. The two genotypes differ in nutritionally-related blood metabolites, growth performance, hide weights and carcass traits. Beef from Nguni and NDCC differs in the IMF and meat lightness but is similar in the meat fatty acid composition and some physico-chemical quality parameters. Automotive crust leathers from the two genotypes were similar in some physico-mechanical properties. Collagen architecture varied among different regions of hides and crust leathers
- Full Text:
- Date Issued: 2016
Evaluation of pre-treatment methods on production of bioethanol from bagasse and sugarcane trash
- Authors: Dodo, Charlie Marembo
- Date: 2019
- Subjects: Lignocellulose
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/15387 , vital:40403
- Description: A variety of methods have been researched on for bioethanol preparation from different feedstocks. Amongst the available feedstock, one such feedstock is the sugarcane plant. In most of the research on bioethanol preparation with sugarcane the sugary juice has been widely used, with the bagasse and trash having been discarded as waste. The “waste” bagasse and trash are usually removed and thrown away or burnt during harvesting or in sugar mills to supplement energy requirements. This research on lignocellulosic bagasse and trash was done so as not to discard them but to rather find ways in which to use this biomass constructively. Alternatives to burning that can potentially add value to this biomass need to be researched on by evaluating their hydrolysis content. The different lignocellulose pretreatment methods of concentrated and dilute acid pretreatment, with subsequent enzyme hydrolysis as well as alkali and oxidative alkali pretreatment with enzyme hydrolysis were experimented on the bagasse and trash for hydrolysis efficiency and effectiveness. There are two types of acid hydrolysis which were investigated on which are concentrated and dilute sulphuric acid pretreatments. Use of concentrated sulphuric acid yielded the highest amounts of reducing sugars but also resulted in the highest amounts of downstream process inhibitors formation. This resulted in the need for neutralisation steps which in turn increase the overall costs of using this method to obtain reducing sugars. It has however the advantage of occurring at a faster rate, within minutes or hours, than using biological enzymes which took days, up to 72 hours to obtain the highest reducing sugar amounts. Dilute sulphuric acid pretreatment offered the advantage of using fewer chemicals which are therefore less severe on equipment and result in fewer fermentation inhibitors being formed. Dilute sulphuric acid hydrolysis also takes a relatively shorter period than biological methods of pretreatment. A challenge of fermentation inhibitors formed during acid hydrolysis was countered by using the methods of overliming (calcium hydroxide) and comparing it to neutralization with sodium hydroxide. Alkali pretreatment with sodium hydroxide was researched on by applying different pretreatment concentrations during experiments on the lignocellulosic biomass. There was an increase in the available quantities of cellulose with a significant reduction in lignin with pretreatment. Alkali pretreatment proved effective in exposing the cellulose which made v more cellulose surface area available to cellulase enzymes for enzyme hydrolysis. The highest yield of reducing sugars was obtained from hydrolysates pretreated with 0.25 M sodium hydroxide for 60 min and a period of 72 h of enzyme hydrolysis. In general the longer the pretreatment time the more reducing sugars were produced from the enzyme hydrolysis. Alkali peroxide pretreatment also resulted in significant reductions in lignin quantities of lignocellulose material. In this method sodium hydroxide in combination with hydrogen peroxide were used in pretreating the biomass. Hydrolysates with even fewer fermentation inhibitors were produced as a result. The highest percentage concentration of cellulose of 63% (g/g) was achieved after pretreatment of bagasse with 5% alkali hydrogen peroxide and trash with 0,25M sodium hydroxide pretreatment. Pretreatment of biomass using alkali with subsequent enzymatic hydrolysis gave the highest yields of fermentable sugars of 38% (g/g) using 7% (v/v) alkali peroxide pre-treated trash than 36% (g/g) for 5% (v/v) with the least inhibitors. Reducing sugar yields of 25% (g/g) and 22% (g/g) were obtained after pretreatment with concentrated and dilute acid respectively. Neutralization of the acid hydrolysates was necessary to reduce inhibitors formed with neutralisation by sodium hydroxide resulting in low dilutions and loss of fermentable sugars as unlike in the case of overliming. Subsequent steps of fermenting the reducing sugars resulting from pretreatment into bioethanol were based on using the yeast Saccharomyces cerevisae. Pretreatment hydrolysates from alkali peroxide experiments produced higher bioethanol yields of 13.7 (g/l) after enzyme hydrolysates versus 6.9 (g/l) bioethanol from dilute acid hydrolyzates. A comparison of the effects of time showed there was more bioethanol yield of 13.7 (g/l) after 72 h of fermentation with the yeast versus 7.0 (g/l) bioethanol after pretreatment for 24 h. The only drawback is the longer fermentation period which thus reduces the process and so reduces the value of the increase in yield
- Full Text:
- Date Issued: 2019
- Authors: Dodo, Charlie Marembo
- Date: 2019
- Subjects: Lignocellulose
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/15387 , vital:40403
- Description: A variety of methods have been researched on for bioethanol preparation from different feedstocks. Amongst the available feedstock, one such feedstock is the sugarcane plant. In most of the research on bioethanol preparation with sugarcane the sugary juice has been widely used, with the bagasse and trash having been discarded as waste. The “waste” bagasse and trash are usually removed and thrown away or burnt during harvesting or in sugar mills to supplement energy requirements. This research on lignocellulosic bagasse and trash was done so as not to discard them but to rather find ways in which to use this biomass constructively. Alternatives to burning that can potentially add value to this biomass need to be researched on by evaluating their hydrolysis content. The different lignocellulose pretreatment methods of concentrated and dilute acid pretreatment, with subsequent enzyme hydrolysis as well as alkali and oxidative alkali pretreatment with enzyme hydrolysis were experimented on the bagasse and trash for hydrolysis efficiency and effectiveness. There are two types of acid hydrolysis which were investigated on which are concentrated and dilute sulphuric acid pretreatments. Use of concentrated sulphuric acid yielded the highest amounts of reducing sugars but also resulted in the highest amounts of downstream process inhibitors formation. This resulted in the need for neutralisation steps which in turn increase the overall costs of using this method to obtain reducing sugars. It has however the advantage of occurring at a faster rate, within minutes or hours, than using biological enzymes which took days, up to 72 hours to obtain the highest reducing sugar amounts. Dilute sulphuric acid pretreatment offered the advantage of using fewer chemicals which are therefore less severe on equipment and result in fewer fermentation inhibitors being formed. Dilute sulphuric acid hydrolysis also takes a relatively shorter period than biological methods of pretreatment. A challenge of fermentation inhibitors formed during acid hydrolysis was countered by using the methods of overliming (calcium hydroxide) and comparing it to neutralization with sodium hydroxide. Alkali pretreatment with sodium hydroxide was researched on by applying different pretreatment concentrations during experiments on the lignocellulosic biomass. There was an increase in the available quantities of cellulose with a significant reduction in lignin with pretreatment. Alkali pretreatment proved effective in exposing the cellulose which made v more cellulose surface area available to cellulase enzymes for enzyme hydrolysis. The highest yield of reducing sugars was obtained from hydrolysates pretreated with 0.25 M sodium hydroxide for 60 min and a period of 72 h of enzyme hydrolysis. In general the longer the pretreatment time the more reducing sugars were produced from the enzyme hydrolysis. Alkali peroxide pretreatment also resulted in significant reductions in lignin quantities of lignocellulose material. In this method sodium hydroxide in combination with hydrogen peroxide were used in pretreating the biomass. Hydrolysates with even fewer fermentation inhibitors were produced as a result. The highest percentage concentration of cellulose of 63% (g/g) was achieved after pretreatment of bagasse with 5% alkali hydrogen peroxide and trash with 0,25M sodium hydroxide pretreatment. Pretreatment of biomass using alkali with subsequent enzymatic hydrolysis gave the highest yields of fermentable sugars of 38% (g/g) using 7% (v/v) alkali peroxide pre-treated trash than 36% (g/g) for 5% (v/v) with the least inhibitors. Reducing sugar yields of 25% (g/g) and 22% (g/g) were obtained after pretreatment with concentrated and dilute acid respectively. Neutralization of the acid hydrolysates was necessary to reduce inhibitors formed with neutralisation by sodium hydroxide resulting in low dilutions and loss of fermentable sugars as unlike in the case of overliming. Subsequent steps of fermenting the reducing sugars resulting from pretreatment into bioethanol were based on using the yeast Saccharomyces cerevisae. Pretreatment hydrolysates from alkali peroxide experiments produced higher bioethanol yields of 13.7 (g/l) after enzyme hydrolysates versus 6.9 (g/l) bioethanol from dilute acid hydrolyzates. A comparison of the effects of time showed there was more bioethanol yield of 13.7 (g/l) after 72 h of fermentation with the yeast versus 7.0 (g/l) bioethanol after pretreatment for 24 h. The only drawback is the longer fermentation period which thus reduces the process and so reduces the value of the increase in yield
- Full Text:
- Date Issued: 2019
Assessment of anti-urease and consequential inhibitory potential of South African honey extracts on the multiplication of drug-resistant, vacA and cagA positive helicobacter pylori strains under acidic conditions
- Authors: Dube, Callote
- Date: 2017
- Subjects: Helicobacter pylori Drug resistance in microorganisms Honey -- Therapeutic use
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/7787 , vital:30764
- Description: Helicobacter pylori, a neutralophile chronically infects the gastric stomach of more than half of the world’s population. Infection with the organism is associated with acute or chronic duodenal/gastric ulcer disease, gastritis, gastric adenocarcinoma, mucosa-associated tissue lymphoma (MALT) and primary B-cell gastric lymphoma and has been grouped as a class one carcinogen by the World Health Organisation (WHO). Prevalence of this organism is very high in developing countries especially in Africa, including South Africa. H. pylori treatment using the common first and second line regimens, triple therapy with two antibiotics and a proton pump inhibitor (PPI) is showing inefficiency due to increasing drug resistance. However, newly developed treatment regimens seem to be more expensive and are accompanied by more side effects. Honey contains phytochemicals which are a wealthy source of biologically active compounds some of which have been put into good use in the pharmaceutical industry. Pathogenesis of H. pylori infection in the human stomach relies on several virulence factors which include the urease enzyme, cagA and vacA. The urease enzyme actively hydrolyses urea to produce ammonia an important by-product involved in pH regulation favouring the survival of the organism in the acidic human stomach. This study therefore focuses on screening for anti-urease solvent extracts of South African honey, and evaluate whether inhibition of urease offsets the growth of H. pylori under acidic conditions. Locally produced natural honeys; Bush honey, Raw honey, Gold Crest honey, Q Bee honey, Little Bee honey, Fleures honey-radurised, Siyakholwa pure honey and Manuka honey; an import from New Zealand were purchased and the method by Syazana et al. (2010) was used for the extraction of compounds in honey. A standard strain ATCC 43526 (American Type Culture Collection, Manassas, VA, USA) and 48 pure cultures obtained from clinical isolates cultured from gastric corpus biopsy specimen of patients with gastric morbidities who were ix visiting the endoscopy unit in Livingstone Hospital, Port Elizabeth between June 2008 to December 2008 were initially used as source of urease enzyme as per extraction method done by Amin et al. (2013), but with modifications. Prior to urease extraction, H. pylori strains were identified by biochemical tests (urease, catalase, oxidase, Gram stain), confirmed by PCR targeting the glmM gene (140 bp) and drug resistance profiling was done on all the 48 strains according to Seanego et al. (2012). The screening for anti-urease active compounds was done according to Kaltwasser et al. (1966), a method relying on the reduction of NADH in a coupled urease dehydrogenase (GDH) system. Acetohydroxamic acid was used as a standard inhibitor. Prevalence of cytotoxin-associated gene A (cagA) gene and vacuolating cytotoxin gene A (vacA) gene was determined among all 48 clinical samples. The standard strains of H. pylori, X47 (cagA positive), J99 (vacA s1m1) and Tx30a (s2m2) were used as positive controls. H. pylori’s growth was then monitored under acidic pH in a cocktail spiked with anti-urease compounds (test samples) and in a cocktail without anti-urease compounds (negative control). Acetohydroxamic acid was used as a standard urease inhibitor. H. pylori multiplication was monitored in Brain Heart Infusion Broth (BHIB) adjusted to pH of 2, 3, 4, 5, 6 and 7. The strain MP01 was used as a standard urease negative strain while X47 and J99 were used as positive standards for cagA and vacA s1m1 respectively. The compounds that had anti-urease activity and were successful towards suppressing the multiplication of H. pylori under acidic environment, all other factors optimised, were subjected to gas chromatograph mass spectrometry (GC-MS) and liquid chromatograph spectrometry (LCMS) to determine volatile compounds and drugs in honey extracts respectively. The findings of this study revealed that at a concentration of 50 mg/mL, urease inhibition by petroleum ether extracts of Gold Crest and Fleures honey, hexane extracts of Little Bee and Manuka honey, and chloroform extracts of Bush honey and Q Bee honey had a range above or equal to 50 percent and there was no significance difference in urease inhibition percentage (I percent) of urease from different sources including that extracted from drug resistant H. pylori (p >0.05). Virulence factors are important for the pathogenesis of H. pylori. All the 48 clinical isolates were glmM (140 bp) positive and cagA was detected in 97.9 percent of the test isolates. The vacA gene was detected in all isolates but with different subtypes. The vacA allelic combination s1m1 was detected in 75 percent of the test isolates and s1m2 allelic combination was detected in 16.7 percent of the test isolates while the combination s2m2 was detected in 8.3 percent of the test isolates. None of the test isolates possessed the allelic combination s2m1. When H. pylori multiplication was monitored under acidic conditions in the presence of anti-urease active compounds, it was revealed that anti-urease active compounds in honey are capable of inhibiting the normal multiplication of H. pylori strains that are cagA positive, vacA positive and drug resistant. The GC-MS analysis showed that Fleures honey (urease I percent = 67.8 – 68.5 percent) and Gold Crest honey (urease I percent = 50.9 percent – 53.3 percent), all petroleum ether extracts had 27 and 26 volatile compounds. The hexane extract of Manuka honey (urease I percent = 50.0 – 53.2) had 43 compounds detected. The chloroform extract of Q Bee (urease I percent = 64.2 – 66.2 percent) had 13 volatile compounds detected. All the volatile compounds considered as representative samples of GC-MS analysis had a spectral matching ≥ 90 percent with the NIST11 library. However, the majority of compounds that were detected by LC-MS in representative honey extracts include vardenafil, urapidil, hydrocortisone, e.t.c which are drugs commonly used in the treatment of different ailments or infections that affect human beings. In addition, two xi drugs, sulfaquinoxaline and hydroxyquinoline which are used in veterinary medicine and antiseptic, disinfectant and pesticide applications in agricultural activities were detected in Little Bee honey. We therefore conclude that inhibition of urease has a bactericidal effect on drug resistant, cagA positive and vacA positive H. pylori strains growing under acidic environment.
- Full Text:
- Date Issued: 2017
- Authors: Dube, Callote
- Date: 2017
- Subjects: Helicobacter pylori Drug resistance in microorganisms Honey -- Therapeutic use
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/7787 , vital:30764
- Description: Helicobacter pylori, a neutralophile chronically infects the gastric stomach of more than half of the world’s population. Infection with the organism is associated with acute or chronic duodenal/gastric ulcer disease, gastritis, gastric adenocarcinoma, mucosa-associated tissue lymphoma (MALT) and primary B-cell gastric lymphoma and has been grouped as a class one carcinogen by the World Health Organisation (WHO). Prevalence of this organism is very high in developing countries especially in Africa, including South Africa. H. pylori treatment using the common first and second line regimens, triple therapy with two antibiotics and a proton pump inhibitor (PPI) is showing inefficiency due to increasing drug resistance. However, newly developed treatment regimens seem to be more expensive and are accompanied by more side effects. Honey contains phytochemicals which are a wealthy source of biologically active compounds some of which have been put into good use in the pharmaceutical industry. Pathogenesis of H. pylori infection in the human stomach relies on several virulence factors which include the urease enzyme, cagA and vacA. The urease enzyme actively hydrolyses urea to produce ammonia an important by-product involved in pH regulation favouring the survival of the organism in the acidic human stomach. This study therefore focuses on screening for anti-urease solvent extracts of South African honey, and evaluate whether inhibition of urease offsets the growth of H. pylori under acidic conditions. Locally produced natural honeys; Bush honey, Raw honey, Gold Crest honey, Q Bee honey, Little Bee honey, Fleures honey-radurised, Siyakholwa pure honey and Manuka honey; an import from New Zealand were purchased and the method by Syazana et al. (2010) was used for the extraction of compounds in honey. A standard strain ATCC 43526 (American Type Culture Collection, Manassas, VA, USA) and 48 pure cultures obtained from clinical isolates cultured from gastric corpus biopsy specimen of patients with gastric morbidities who were ix visiting the endoscopy unit in Livingstone Hospital, Port Elizabeth between June 2008 to December 2008 were initially used as source of urease enzyme as per extraction method done by Amin et al. (2013), but with modifications. Prior to urease extraction, H. pylori strains were identified by biochemical tests (urease, catalase, oxidase, Gram stain), confirmed by PCR targeting the glmM gene (140 bp) and drug resistance profiling was done on all the 48 strains according to Seanego et al. (2012). The screening for anti-urease active compounds was done according to Kaltwasser et al. (1966), a method relying on the reduction of NADH in a coupled urease dehydrogenase (GDH) system. Acetohydroxamic acid was used as a standard inhibitor. Prevalence of cytotoxin-associated gene A (cagA) gene and vacuolating cytotoxin gene A (vacA) gene was determined among all 48 clinical samples. The standard strains of H. pylori, X47 (cagA positive), J99 (vacA s1m1) and Tx30a (s2m2) were used as positive controls. H. pylori’s growth was then monitored under acidic pH in a cocktail spiked with anti-urease compounds (test samples) and in a cocktail without anti-urease compounds (negative control). Acetohydroxamic acid was used as a standard urease inhibitor. H. pylori multiplication was monitored in Brain Heart Infusion Broth (BHIB) adjusted to pH of 2, 3, 4, 5, 6 and 7. The strain MP01 was used as a standard urease negative strain while X47 and J99 were used as positive standards for cagA and vacA s1m1 respectively. The compounds that had anti-urease activity and were successful towards suppressing the multiplication of H. pylori under acidic environment, all other factors optimised, were subjected to gas chromatograph mass spectrometry (GC-MS) and liquid chromatograph spectrometry (LCMS) to determine volatile compounds and drugs in honey extracts respectively. The findings of this study revealed that at a concentration of 50 mg/mL, urease inhibition by petroleum ether extracts of Gold Crest and Fleures honey, hexane extracts of Little Bee and Manuka honey, and chloroform extracts of Bush honey and Q Bee honey had a range above or equal to 50 percent and there was no significance difference in urease inhibition percentage (I percent) of urease from different sources including that extracted from drug resistant H. pylori (p >0.05). Virulence factors are important for the pathogenesis of H. pylori. All the 48 clinical isolates were glmM (140 bp) positive and cagA was detected in 97.9 percent of the test isolates. The vacA gene was detected in all isolates but with different subtypes. The vacA allelic combination s1m1 was detected in 75 percent of the test isolates and s1m2 allelic combination was detected in 16.7 percent of the test isolates while the combination s2m2 was detected in 8.3 percent of the test isolates. None of the test isolates possessed the allelic combination s2m1. When H. pylori multiplication was monitored under acidic conditions in the presence of anti-urease active compounds, it was revealed that anti-urease active compounds in honey are capable of inhibiting the normal multiplication of H. pylori strains that are cagA positive, vacA positive and drug resistant. The GC-MS analysis showed that Fleures honey (urease I percent = 67.8 – 68.5 percent) and Gold Crest honey (urease I percent = 50.9 percent – 53.3 percent), all petroleum ether extracts had 27 and 26 volatile compounds. The hexane extract of Manuka honey (urease I percent = 50.0 – 53.2) had 43 compounds detected. The chloroform extract of Q Bee (urease I percent = 64.2 – 66.2 percent) had 13 volatile compounds detected. All the volatile compounds considered as representative samples of GC-MS analysis had a spectral matching ≥ 90 percent with the NIST11 library. However, the majority of compounds that were detected by LC-MS in representative honey extracts include vardenafil, urapidil, hydrocortisone, e.t.c which are drugs commonly used in the treatment of different ailments or infections that affect human beings. In addition, two xi drugs, sulfaquinoxaline and hydroxyquinoline which are used in veterinary medicine and antiseptic, disinfectant and pesticide applications in agricultural activities were detected in Little Bee honey. We therefore conclude that inhibition of urease has a bactericidal effect on drug resistant, cagA positive and vacA positive H. pylori strains growing under acidic environment.
- Full Text:
- Date Issued: 2017
Production and molecular characterization of peroxidases from novel ligninolytic proteobacteria and bacillus strains
- Authors: Falade, Ayodeji Osmund
- Date: 2018
- Subjects: Peroxidase Catalase
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/9702 , vital:34823
- Description: Inadequate quantity is a major impediment to the industrial application of peroxidase and other industrial enzymes. Consequently, efforts are geared towards increasing peroxidase production by searching for new microbes with enhanced production capacity. In this study, three novel ligninolytic bacteria: Raoultella ornithinolytica OKOH-1 (KX640917), Ensifer adhaerens NWODO-2 (KX640918) and Bacillus sp. FALADE-1 (KX640922) were optimized for peroxidase production and their peroxidases characterized using molecular and biochemical approaches. Molecular analysis confirmed the presence of peroxidase genes in the three bacteria. BLAST result and phylogenetic analysis of the deduced amino acid sequences suggested that Raoultella ornithinolytica OKOH-1 peroxidase (RaoPrx) belongs to a DyP-type peroxidase family while peroxidases from Ensifer adhaerens NWODO-2 and Bacillus sp. FALADE-1 are catalase-peroxidases. The peroxidase genes are available in the GenBank with MF370527, MF374336 and MF407314 as respective accession numbers. Upon optimization, Raoultella ornithinolytica OKOH-1 exhibited the highest peroxidase production at pH 5, 35 oC and 150 rpm. Biochemical characterization showed that RaoPrx had a wide substrate specificity as it was able to oxidize all the tested substrates in this study (ABTS, veratryl alcohol, guaiacol and pyrogallol), except 2, 6-Dimethoxyphenol. However, highest activity by the enzyme was recorded with pyrogallol as substrate. The enzyme had an optimum activity at pH 6 and 50 oC and was very stable at high temperatures (50 oC – 70 oC). Its pH stability was over a pH range of 5.0 – 7.0. Moreover, RaoPrx activity was significantly enhanced by Ag+, Cu2+, Zn2+and Fe2+ while Ca2+, Mg2+, Ba2+, Al3+, Co2+, NaN3 and EDTA inhibited the activity of the enzyme. Nevertheless, RaoPrx exhibited a remarkable dye-decolourizing activity on congo red and melanin, indicating the biotechnological potential of the enzyme in dye decolourization and development of cosmetic agent. Generally, the results from this study suggest that ligninolytic bacteria hold a great potential for enhanced peroxidase production that could meet the increasing industrial demand.
- Full Text:
- Date Issued: 2018
- Authors: Falade, Ayodeji Osmund
- Date: 2018
- Subjects: Peroxidase Catalase
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/9702 , vital:34823
- Description: Inadequate quantity is a major impediment to the industrial application of peroxidase and other industrial enzymes. Consequently, efforts are geared towards increasing peroxidase production by searching for new microbes with enhanced production capacity. In this study, three novel ligninolytic bacteria: Raoultella ornithinolytica OKOH-1 (KX640917), Ensifer adhaerens NWODO-2 (KX640918) and Bacillus sp. FALADE-1 (KX640922) were optimized for peroxidase production and their peroxidases characterized using molecular and biochemical approaches. Molecular analysis confirmed the presence of peroxidase genes in the three bacteria. BLAST result and phylogenetic analysis of the deduced amino acid sequences suggested that Raoultella ornithinolytica OKOH-1 peroxidase (RaoPrx) belongs to a DyP-type peroxidase family while peroxidases from Ensifer adhaerens NWODO-2 and Bacillus sp. FALADE-1 are catalase-peroxidases. The peroxidase genes are available in the GenBank with MF370527, MF374336 and MF407314 as respective accession numbers. Upon optimization, Raoultella ornithinolytica OKOH-1 exhibited the highest peroxidase production at pH 5, 35 oC and 150 rpm. Biochemical characterization showed that RaoPrx had a wide substrate specificity as it was able to oxidize all the tested substrates in this study (ABTS, veratryl alcohol, guaiacol and pyrogallol), except 2, 6-Dimethoxyphenol. However, highest activity by the enzyme was recorded with pyrogallol as substrate. The enzyme had an optimum activity at pH 6 and 50 oC and was very stable at high temperatures (50 oC – 70 oC). Its pH stability was over a pH range of 5.0 – 7.0. Moreover, RaoPrx activity was significantly enhanced by Ag+, Cu2+, Zn2+and Fe2+ while Ca2+, Mg2+, Ba2+, Al3+, Co2+, NaN3 and EDTA inhibited the activity of the enzyme. Nevertheless, RaoPrx exhibited a remarkable dye-decolourizing activity on congo red and melanin, indicating the biotechnological potential of the enzyme in dye decolourization and development of cosmetic agent. Generally, the results from this study suggest that ligninolytic bacteria hold a great potential for enhanced peroxidase production that could meet the increasing industrial demand.
- Full Text:
- Date Issued: 2018
Evaluation and identification of microbial contaminants in polyherbal medicines used for the treatment of tuberculosis in Amathole District Municipality, Eastern Cape Province, South Africa
- Authors: Famewo, Elizabeth Bosede
- Date: 2018
- Subjects: Tuberculosis -- Treatment -- South Africa Mycobacterial diseases -- South Africa -- Eastern Cape Medicinal plants -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/9680 , vital:34818
- Description: Tuberculosis is caused by Mycobacterium tuberculosis. The emergence of drug-resistant strains of this organism has become a global public health problem. In the continuing search for effective treatment, polyherbal medicines offer a great hope in the development of alternative drugs for the treatment of tuberculosis. The use of herbal formulations for therapeutic purposes has significantly increased in the developed and developing countries because of their curative property, less toxicity and minimal side effects. However, there is little information on their safety and effectiveness in the literature. To address this, polyherbal medicines used for the treatment of tuberculosis in the Eastern Cape Province of South Africa were evaluated. Ethno-medicinal survey was conducted through semi-structured questionnaires coupled with informal conversations with the herbal sellers in five communities in the study area. Bacterial and fungal DNA was extracted from the polyherbal medicines purchased. A fragment of the bacterial 16S rRNA gene and internal transcribed spacer region of the fungal rRNA operon were amplified with universal primers 27F and 518R, and ITS1 and ITS4 respectively. Following standard procedures, the amplicons were finally run on Illumina’s MiSeq platform. Furthermore, the remedies were screened against Mycobacterium tuberculosis H37Rv using Middlebrook 7H9 media and MGIT BACTEC 960 system. Agar dilution method was used to determine the minimum inhibitory concentration (MIC) of the remedies against eight bacteria and three fungi isolates. The herbal preparations were assayed for their toxicity using hatchability success and larval mortality of Artemia salina Leach. Finally, their nutritive properties were analysed using an inductively coupled plasma optical emission spectrometer for mineral analysis while the vitamins were determined using standardized methods A total of nine polyherbal preparations were collected. The herbs used for the preparation of these remedies belong to 20 families. Apiaceae [5(25 percent)] was the most prominent plant family used, followed by Liliaceae [4(20 percent)], Strychnaceae [4(20 percent)], Rutaceae [4(20 percent)] and Hypoxidaceae [3(15 percent)]. The two most frequently used plants were Allium sativum L. (Liliaceae) and Strychnos decussata (Pappe) Gilg. (Strychnaceae). Rhizomes was the most common parts used, followed by the roots and barks. The herbal medicines were prepared mainly by infusion and decoction. The presences of pathogenic and non-pathogenic bacteria were identified in the polyherbal medicines. Generally, the most common bacteria identified from the samples were Bacillus sp., Enterobacter sp., Klebsiella sp., Rahnella sp., Paenibacillus sp., Clostridium sp. and Pantoea sp. The predominant mycoflora obtained belongs to different genera or species of fungi; these include Alternaria, Candida, Ramularia, Cladosporium, Penicillium, Aspergillus and Malassezia. The susceptibility testing revealed that all the remedies contain anti-tubercular activity against M. tuberculosis H37Rv at concentrations below 50 ug/ml. Seven of the polyherbal preparations showed activity at concentrations below 25 ug/ml. The MIC values exhibited inhibitory activity at 1.562 μg/ml. However, isoniazid showed more inhibitory activity against M. tuberculosis at 0.05 μg/ml when compared to the polyherbal remedies. The inhibitory activity of the polyherbal medicines based on the overall MIC revealed that Hogsback first site (HBfs) and Fort Beaufort (FB) remedies were the most active remedies against the bacterial isolates at the concentration of 2.5 mg/mL. Among the nine herbal formulations, only King Williams Town site A (KWTa) remedy showed activity against Aspergillus niger and Aspergillus fumigatus with the MIC valve of 2.5 mg/mL. While King Williams Town site C (KWTc) and Hogsback third site (HBts) had the highest activity at 1.25 mg/mL against Candida albicans, the remaining remedies were active at 2.5 mg/mL. The percentage hatchability of 44.42 percent, 42.96 percent and 39.70 percent were observed in A. salina cysts incubated with herbal preparations from KWTa, HBfs and HBts respectively. The hatching success of the cysts in these remedies was significantly higher than the positive control (nystatin) and the negative control (sea water) at p < 0.05. The mortality of A. salina nauplii incubated in Alice (AL), King Williams Town site B (KWTb) and KWTc remedies were significantly higher than when larvae were incubated in both controls. Based on Meyer’s index, the LD50 of each polyherbal medicine was between 2.9 and 4.0 mg/ml, the LD50 values greater than 1 mg/ml, an indication that they are not toxic. The polyherbal preparations were found to be rich in vitamins and mineral nutrients. Calcium was the highest macronutrient detected while the lowest nutrient was phosphorus. Iron was the highest micronutrient in the majority of the polyherbal preparations while the lowest value was recorded for copper. Vitamin C was absent in the herbal preparations while vitamin A and E were detected. This study provides significant ethno-medicinal information on polyherbal medicines used for the treatment of TB in the study area. The presence of the identified bacteria and fungi in the herbal formulations is a cause for concern. However, the ability of the remedies to possess activity against Mycobacterium tuberculosis and other pathogenic microorganisms associated with tuberculosis infection makes them potential sources of new antimycobacterial agents. Also, they are rich sources of mineral nutrients, and are as well non-toxic, thus, they are safe for consumption. In view of their anti-tubercular properties, this study has provided a better understanding of the reasons why TB-patients make use of these polyherbal formulations. Also, the study supports the folkloric use of polyherbal medicines in the treatment of tuberculosis in the Eastern Cape Province, South Africa.
- Full Text:
- Date Issued: 2018
- Authors: Famewo, Elizabeth Bosede
- Date: 2018
- Subjects: Tuberculosis -- Treatment -- South Africa Mycobacterial diseases -- South Africa -- Eastern Cape Medicinal plants -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/9680 , vital:34818
- Description: Tuberculosis is caused by Mycobacterium tuberculosis. The emergence of drug-resistant strains of this organism has become a global public health problem. In the continuing search for effective treatment, polyherbal medicines offer a great hope in the development of alternative drugs for the treatment of tuberculosis. The use of herbal formulations for therapeutic purposes has significantly increased in the developed and developing countries because of their curative property, less toxicity and minimal side effects. However, there is little information on their safety and effectiveness in the literature. To address this, polyherbal medicines used for the treatment of tuberculosis in the Eastern Cape Province of South Africa were evaluated. Ethno-medicinal survey was conducted through semi-structured questionnaires coupled with informal conversations with the herbal sellers in five communities in the study area. Bacterial and fungal DNA was extracted from the polyherbal medicines purchased. A fragment of the bacterial 16S rRNA gene and internal transcribed spacer region of the fungal rRNA operon were amplified with universal primers 27F and 518R, and ITS1 and ITS4 respectively. Following standard procedures, the amplicons were finally run on Illumina’s MiSeq platform. Furthermore, the remedies were screened against Mycobacterium tuberculosis H37Rv using Middlebrook 7H9 media and MGIT BACTEC 960 system. Agar dilution method was used to determine the minimum inhibitory concentration (MIC) of the remedies against eight bacteria and three fungi isolates. The herbal preparations were assayed for their toxicity using hatchability success and larval mortality of Artemia salina Leach. Finally, their nutritive properties were analysed using an inductively coupled plasma optical emission spectrometer for mineral analysis while the vitamins were determined using standardized methods A total of nine polyherbal preparations were collected. The herbs used for the preparation of these remedies belong to 20 families. Apiaceae [5(25 percent)] was the most prominent plant family used, followed by Liliaceae [4(20 percent)], Strychnaceae [4(20 percent)], Rutaceae [4(20 percent)] and Hypoxidaceae [3(15 percent)]. The two most frequently used plants were Allium sativum L. (Liliaceae) and Strychnos decussata (Pappe) Gilg. (Strychnaceae). Rhizomes was the most common parts used, followed by the roots and barks. The herbal medicines were prepared mainly by infusion and decoction. The presences of pathogenic and non-pathogenic bacteria were identified in the polyherbal medicines. Generally, the most common bacteria identified from the samples were Bacillus sp., Enterobacter sp., Klebsiella sp., Rahnella sp., Paenibacillus sp., Clostridium sp. and Pantoea sp. The predominant mycoflora obtained belongs to different genera or species of fungi; these include Alternaria, Candida, Ramularia, Cladosporium, Penicillium, Aspergillus and Malassezia. The susceptibility testing revealed that all the remedies contain anti-tubercular activity against M. tuberculosis H37Rv at concentrations below 50 ug/ml. Seven of the polyherbal preparations showed activity at concentrations below 25 ug/ml. The MIC values exhibited inhibitory activity at 1.562 μg/ml. However, isoniazid showed more inhibitory activity against M. tuberculosis at 0.05 μg/ml when compared to the polyherbal remedies. The inhibitory activity of the polyherbal medicines based on the overall MIC revealed that Hogsback first site (HBfs) and Fort Beaufort (FB) remedies were the most active remedies against the bacterial isolates at the concentration of 2.5 mg/mL. Among the nine herbal formulations, only King Williams Town site A (KWTa) remedy showed activity against Aspergillus niger and Aspergillus fumigatus with the MIC valve of 2.5 mg/mL. While King Williams Town site C (KWTc) and Hogsback third site (HBts) had the highest activity at 1.25 mg/mL against Candida albicans, the remaining remedies were active at 2.5 mg/mL. The percentage hatchability of 44.42 percent, 42.96 percent and 39.70 percent were observed in A. salina cysts incubated with herbal preparations from KWTa, HBfs and HBts respectively. The hatching success of the cysts in these remedies was significantly higher than the positive control (nystatin) and the negative control (sea water) at p < 0.05. The mortality of A. salina nauplii incubated in Alice (AL), King Williams Town site B (KWTb) and KWTc remedies were significantly higher than when larvae were incubated in both controls. Based on Meyer’s index, the LD50 of each polyherbal medicine was between 2.9 and 4.0 mg/ml, the LD50 values greater than 1 mg/ml, an indication that they are not toxic. The polyherbal preparations were found to be rich in vitamins and mineral nutrients. Calcium was the highest macronutrient detected while the lowest nutrient was phosphorus. Iron was the highest micronutrient in the majority of the polyherbal preparations while the lowest value was recorded for copper. Vitamin C was absent in the herbal preparations while vitamin A and E were detected. This study provides significant ethno-medicinal information on polyherbal medicines used for the treatment of TB in the study area. The presence of the identified bacteria and fungi in the herbal formulations is a cause for concern. However, the ability of the remedies to possess activity against Mycobacterium tuberculosis and other pathogenic microorganisms associated with tuberculosis infection makes them potential sources of new antimycobacterial agents. Also, they are rich sources of mineral nutrients, and are as well non-toxic, thus, they are safe for consumption. In view of their anti-tubercular properties, this study has provided a better understanding of the reasons why TB-patients make use of these polyherbal formulations. Also, the study supports the folkloric use of polyherbal medicines in the treatment of tuberculosis in the Eastern Cape Province, South Africa.
- Full Text:
- Date Issued: 2018
Improving Productivity of Maize-based Smallholder Irrigated Cropping Systems: A Case Study of Zanyokwe Irrigation Scheme, Eastern Cape, South Africa
- Authors: Fanadzo, Morris
- Date: 2010
- Subjects: Farms, Small -- South Africa -- Eastern Cape Crop yields -- South Africa -- Eastern Cape Agricultural productivity -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/11009 , vital:36450
- Description: Smallholder irrigation schemes (SIS) in South Africa have performed poorly and failed to achieve the development objectives of sustaining rural livelihoods by increasing crop production and income. Limited knowledge of crop production among farmers is one constraint to improved crop productivity and, yet little research has been carried out to relate agronomic practices to productivity. This study was aimed at identifying strategies to improve the productivity of maize-based smallholder irrigated cropping systems in South Africa, using Zanyokwe irrigation scheme (ZIS) in the Eastern Cape Province as a case study. The research design was emergent, developed progressively as influenced by the progressive analyses that were made. The research work involved two main phases: exploratory studies and refinement on-farm experiments for testing technologies as informed by the exploratory studies. Exploratory studies were aimed at describing farmer crop production practices in major crop enterprises and identifying and prioritizing major agronomic yield constraints. Findings indicated that the overall performance of the cropping systems was poor as evidenced by low overall yields of < 25% of the potential in maize and butternut. Poor management of weeds, soil fertility, plant populations and water, late planting and poor cultivar choice were the most important yield constraints. The average cropping intensity achieved by farmers was only 48%. New hybrids yielded 50 - 65% higher grain than the cultivars commonly grown by farmers. However, farmers favoured their traditional cultivars, as they preferred green maize production as opposed to dry grains. As a result of these findings, focused research was designed on options for iii improving green maize production, soil fertility, crop stand and weed management in crop production. On-farm trials were, therefore, designed to (1) compare the response to nitrogen (N) rate of direct seeded and transplanted maize; (2) evaluate comparative performance of direct seeded and transplanted green maize under farmer management, and to work out the economics of transplanting; (3) investigate the effects of row spacing and atrazine dosage on weed dynamics maize yield; (4) determine the effects of inter-row spacing and plant population on weed dynamics and maize yield; and (5) investigate the effects of pre-plant weed control, N rate and plant population on weed dynamics and butternut yield. Maize transplanting improved crop stand, had earlier maturity and yielded higher at lower N rates compared to direct seeding for both green and grain maize. Total costs that varied were higher by R3 565 ha-1 for transplanted maize compared to direct-seeded maize, but the net benefits from transplanting were also much higher by R8 773 ha-1. Farmers favoured transplanting, citing bigger cobs, early maturity and the absence of seedling damage by birds, when maize was transplanted. However, a follow-up survey conducted during the subsequent year indicated that five of the six farmers abandoned transplanting, citing shortage of labour and high cost of commercially produced seedlings. It was concluded that transplanting is unlikely to be adopted unless the labour intensiveness of manual transplanting can be solved. Increasing atrazine dosage from a third of the label recommended dosage (LRD) and reducing row spacing from 90 to 45 cm resulted in an increase in weed mortality. A 100% kill of annual broadleaf weeds was possible while iv perennial grasses and the annual broadleaf weed, Oxalis latifolia, could not be controlled even at the LRD. However, improved weed mortality with increase in atrazine dosage and/or narrow rows did not translate into improved maize productivity. In butternut, pre-plant weed control resulted in a six-fold decrease in weed biomass and a 100% increase in fruit yield. These findings demonstrated the possibility of incorporation of reduced herbicide dosages and narrow rows to achieve adequate weed control and optimise on maize yields in smallholder farming systems. The results also suggested that pre-plant weed control is one of the pre-requisite to successful butternut production in SIS in South Africa. Increasing maize population from 40 000 to 60 000 plants ha-1 resulted in a 30% grain yield increase, but decreased length of cobs. Row spacing had no effect on maize yield at 40 000 plants ha-1, but at 60 000 plants ha-1 45 cm rows resulted in 11% higher grain yield (12 547 kg ha-1) than 90 cm rows (11 288 kg ha-1). Butternut yield increased significantly (p < 0.01) with increase in plant population and N rate. The optimum butternut population and N rate were estimated at 25 000 plants ha-1 and 120 kg N ha-1, respectively. Pre-plant weed control in butternut resulted in a six-fold decrease in weed biomass. Increasing butternut planting density from 10 000 to 30 000 plants ha-1 decreased weed biomass by 47%. No marketable fruits were obtained when planting was done without prior weed control. This result suggest that application of non-selective herbicide before planting is one technique that can be used by farmers as part of integrated weed management to give the crop a competitive advantage in the early growth stages before the plants start to produce vines. Yield increased significantly (p < 0.01) with increase in plant density and N rate. The optimum plant density and N rate were estimated at 25 000 plants ha-1 and 120 kg N ha-1, respectively. These findings emphasise the need to take into consideration production practices by farmers as a basis to build up skills in the management of crop enterprises and the farm as a viable business in any efforts to improve on the performance of SIS in South Africa. Future research should concentrate on labour-saving sustainable production technologies for SIS in South Africa.
- Full Text:
- Date Issued: 2010
- Authors: Fanadzo, Morris
- Date: 2010
- Subjects: Farms, Small -- South Africa -- Eastern Cape Crop yields -- South Africa -- Eastern Cape Agricultural productivity -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/11009 , vital:36450
- Description: Smallholder irrigation schemes (SIS) in South Africa have performed poorly and failed to achieve the development objectives of sustaining rural livelihoods by increasing crop production and income. Limited knowledge of crop production among farmers is one constraint to improved crop productivity and, yet little research has been carried out to relate agronomic practices to productivity. This study was aimed at identifying strategies to improve the productivity of maize-based smallholder irrigated cropping systems in South Africa, using Zanyokwe irrigation scheme (ZIS) in the Eastern Cape Province as a case study. The research design was emergent, developed progressively as influenced by the progressive analyses that were made. The research work involved two main phases: exploratory studies and refinement on-farm experiments for testing technologies as informed by the exploratory studies. Exploratory studies were aimed at describing farmer crop production practices in major crop enterprises and identifying and prioritizing major agronomic yield constraints. Findings indicated that the overall performance of the cropping systems was poor as evidenced by low overall yields of < 25% of the potential in maize and butternut. Poor management of weeds, soil fertility, plant populations and water, late planting and poor cultivar choice were the most important yield constraints. The average cropping intensity achieved by farmers was only 48%. New hybrids yielded 50 - 65% higher grain than the cultivars commonly grown by farmers. However, farmers favoured their traditional cultivars, as they preferred green maize production as opposed to dry grains. As a result of these findings, focused research was designed on options for iii improving green maize production, soil fertility, crop stand and weed management in crop production. On-farm trials were, therefore, designed to (1) compare the response to nitrogen (N) rate of direct seeded and transplanted maize; (2) evaluate comparative performance of direct seeded and transplanted green maize under farmer management, and to work out the economics of transplanting; (3) investigate the effects of row spacing and atrazine dosage on weed dynamics maize yield; (4) determine the effects of inter-row spacing and plant population on weed dynamics and maize yield; and (5) investigate the effects of pre-plant weed control, N rate and plant population on weed dynamics and butternut yield. Maize transplanting improved crop stand, had earlier maturity and yielded higher at lower N rates compared to direct seeding for both green and grain maize. Total costs that varied were higher by R3 565 ha-1 for transplanted maize compared to direct-seeded maize, but the net benefits from transplanting were also much higher by R8 773 ha-1. Farmers favoured transplanting, citing bigger cobs, early maturity and the absence of seedling damage by birds, when maize was transplanted. However, a follow-up survey conducted during the subsequent year indicated that five of the six farmers abandoned transplanting, citing shortage of labour and high cost of commercially produced seedlings. It was concluded that transplanting is unlikely to be adopted unless the labour intensiveness of manual transplanting can be solved. Increasing atrazine dosage from a third of the label recommended dosage (LRD) and reducing row spacing from 90 to 45 cm resulted in an increase in weed mortality. A 100% kill of annual broadleaf weeds was possible while iv perennial grasses and the annual broadleaf weed, Oxalis latifolia, could not be controlled even at the LRD. However, improved weed mortality with increase in atrazine dosage and/or narrow rows did not translate into improved maize productivity. In butternut, pre-plant weed control resulted in a six-fold decrease in weed biomass and a 100% increase in fruit yield. These findings demonstrated the possibility of incorporation of reduced herbicide dosages and narrow rows to achieve adequate weed control and optimise on maize yields in smallholder farming systems. The results also suggested that pre-plant weed control is one of the pre-requisite to successful butternut production in SIS in South Africa. Increasing maize population from 40 000 to 60 000 plants ha-1 resulted in a 30% grain yield increase, but decreased length of cobs. Row spacing had no effect on maize yield at 40 000 plants ha-1, but at 60 000 plants ha-1 45 cm rows resulted in 11% higher grain yield (12 547 kg ha-1) than 90 cm rows (11 288 kg ha-1). Butternut yield increased significantly (p < 0.01) with increase in plant population and N rate. The optimum butternut population and N rate were estimated at 25 000 plants ha-1 and 120 kg N ha-1, respectively. Pre-plant weed control in butternut resulted in a six-fold decrease in weed biomass. Increasing butternut planting density from 10 000 to 30 000 plants ha-1 decreased weed biomass by 47%. No marketable fruits were obtained when planting was done without prior weed control. This result suggest that application of non-selective herbicide before planting is one technique that can be used by farmers as part of integrated weed management to give the crop a competitive advantage in the early growth stages before the plants start to produce vines. Yield increased significantly (p < 0.01) with increase in plant density and N rate. The optimum plant density and N rate were estimated at 25 000 plants ha-1 and 120 kg N ha-1, respectively. These findings emphasise the need to take into consideration production practices by farmers as a basis to build up skills in the management of crop enterprises and the farm as a viable business in any efforts to improve on the performance of SIS in South Africa. Future research should concentrate on labour-saving sustainable production technologies for SIS in South Africa.
- Full Text:
- Date Issued: 2010
Population, communication and habitat comparisons between the major gummivorous strepsirhines of Madagascar (phaner) and Cameroon (euoticus)
- Authors: Forbanka, Derick Nomuh
- Date: 2016
- Subjects: Adaptation (Biology) , Mammals -- Evolution , Mammals -- Behavior
- Language: English
- Type: Thesis , Doctoral , Zoology
- Identifier: http://hdl.handle.net/10353/15957 , vital:40567
- Description: The suborder Strepsirhini contains a large proportion of the living gummivorous mammal taxa, and includes two genera of specialist gummivores, Euoticus and Phaner, which present particularly interesting cases of convergent adaptive evolution in Africa and Madagascar, respectively. Although these genera are not closely related, they share several anatomical, behavioural and physiological specialisations associated with their diets, and despite their biogeographical separation, there seems to be substantial coincidence in their habitats and habits. Neither the ecology nor the systematics of Phaner and Euoticus has been the subject of much detailed research, and little is known of the conservation status of the genera. Even their specific diversity is unresolved. In this study I investigated and compared aspects of their ecology at both a macro-and a microhabitat scale, including wild populations of all groups within the two genera that have been accorded species status in recent field guides and systematic reviews. I also studied aspects of their social communication behaviour as clues to their species-level diversity. Species and their formation (or speciation) have inspired a great deal of evolutionary research, but remain contentious issues in evolutionary biology. This is due both to the difficulties inherent in inferring the details of a dynamic biological process that occurred over some time in the past from the recent, relatively static patterns of variation observed, as well as the limited consensus among biologists in identifying such patterns. It is therefore important to distinguish the kinds of patterns in nature that are predicted by different views of species and speciation, and also to see how well these predictions fare when applied to the speciation patterns found in strepsirhine primates. Theories of speciation cannot be separated from species concepts, and one concept widely supported in primatology is the Recognition Concept of species because of its heuristic nature. The Recognition Concept is based on Specific-mate Recognition Systems (SMRS). I focussed on SMRS features of Euoticus and Phaner, loud call specificity, and species’ preferred habitats. My results provided some support for the distinctiveness of currently identified species, although this was not clear-cut. Population densities of both Phaner and Euoticus appear to have declined in recent years, even though both Phaner and Euoticus appear to be well adapted to both primary and secondary forest, and exhibit ecological plasticity. Statistically some loud call parameters vary among the putative species of the genus Phaner and not Euoticus. Phaner pallescens at Kirindy, Madasgascar was clearly able to discriminate loud calls of its own population from other proposed species within the genus. Most loud call parameters did not show any statistical degradation with increasing distance. A crucial finding of my study was that the two lineages are not only convergent in terms of dietary and locomotor aspects of their ecology, but also in the structures of their loud calls. The environmental adaptation of communication systems is often overlooked when studying adaptive convergence, but my study indicates that acoustic properties are a crucial aspect of a species’ preferred habitat. The results of this study can be used to improve conservation planning, and also add to our understanding of the evolutionary history of strepsirhine primates.
- Full Text:
- Date Issued: 2016
- Authors: Forbanka, Derick Nomuh
- Date: 2016
- Subjects: Adaptation (Biology) , Mammals -- Evolution , Mammals -- Behavior
- Language: English
- Type: Thesis , Doctoral , Zoology
- Identifier: http://hdl.handle.net/10353/15957 , vital:40567
- Description: The suborder Strepsirhini contains a large proportion of the living gummivorous mammal taxa, and includes two genera of specialist gummivores, Euoticus and Phaner, which present particularly interesting cases of convergent adaptive evolution in Africa and Madagascar, respectively. Although these genera are not closely related, they share several anatomical, behavioural and physiological specialisations associated with their diets, and despite their biogeographical separation, there seems to be substantial coincidence in their habitats and habits. Neither the ecology nor the systematics of Phaner and Euoticus has been the subject of much detailed research, and little is known of the conservation status of the genera. Even their specific diversity is unresolved. In this study I investigated and compared aspects of their ecology at both a macro-and a microhabitat scale, including wild populations of all groups within the two genera that have been accorded species status in recent field guides and systematic reviews. I also studied aspects of their social communication behaviour as clues to their species-level diversity. Species and their formation (or speciation) have inspired a great deal of evolutionary research, but remain contentious issues in evolutionary biology. This is due both to the difficulties inherent in inferring the details of a dynamic biological process that occurred over some time in the past from the recent, relatively static patterns of variation observed, as well as the limited consensus among biologists in identifying such patterns. It is therefore important to distinguish the kinds of patterns in nature that are predicted by different views of species and speciation, and also to see how well these predictions fare when applied to the speciation patterns found in strepsirhine primates. Theories of speciation cannot be separated from species concepts, and one concept widely supported in primatology is the Recognition Concept of species because of its heuristic nature. The Recognition Concept is based on Specific-mate Recognition Systems (SMRS). I focussed on SMRS features of Euoticus and Phaner, loud call specificity, and species’ preferred habitats. My results provided some support for the distinctiveness of currently identified species, although this was not clear-cut. Population densities of both Phaner and Euoticus appear to have declined in recent years, even though both Phaner and Euoticus appear to be well adapted to both primary and secondary forest, and exhibit ecological plasticity. Statistically some loud call parameters vary among the putative species of the genus Phaner and not Euoticus. Phaner pallescens at Kirindy, Madasgascar was clearly able to discriminate loud calls of its own population from other proposed species within the genus. Most loud call parameters did not show any statistical degradation with increasing distance. A crucial finding of my study was that the two lineages are not only convergent in terms of dietary and locomotor aspects of their ecology, but also in the structures of their loud calls. The environmental adaptation of communication systems is often overlooked when studying adaptive convergence, but my study indicates that acoustic properties are a crucial aspect of a species’ preferred habitat. The results of this study can be used to improve conservation planning, and also add to our understanding of the evolutionary history of strepsirhine primates.
- Full Text:
- Date Issued: 2016
Incidence of cholera-causing and non cholera-causing pathogenic vibrio species in the river-k and two of its feeder wastewater treatment plants in the Raymond Mhlaba municipality, Eastern Cape province of South Africa
- Authors: Gcilitshana, Onele
- Date: 2019
- Subjects: Water -- Purification -- South Africa -- Eastern Cape Effluent quality -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/15145 , vital:40190
- Description: Despite technological advances in water treatment and improved sanitation in many developing countries, acute microbial diseases still thrive and continue to distress millions of people. This is due to the high number of rural dwellers that still source water for drinking and other domestic uses from contaminated rivers. In South Africa, there have been reports on waterborne disease outbreaks, and specifically in the area understudy, two records of diarrhoeal outbreaks associated with consumption of river water were reported within the last decade. All those outbreaks and previous reports on isolation of other pathogenic bacteria within the area necessitated the conduction of this study in order to identify the potential causes of the cholera-associate diarrheal outbreaks previously reported in the area and nationally. This study was designed to assess the incidence of cholera-causing and non-cholera causing pathogens in final effluents and surface waters of the Raymond Mhlaba Local Municipality, Eastern Cape Province, South Africa. RiverK which serves as a major resource for domestic activities, agricultural practices as well as an abstraction point for a potable water treatment plant was used for this study. River-K freshwater and final effluents of its two feeder wastewater treatment plants were sampled monthly, over a twelve-month period (December 2016–November 2017). For purposes of confidentiality, the names of the wastewater treatment plants and river involved are coded in this report. A total of 108 water samples were assessed for the physicochemical parameters that influence the presence of Vibrio pathogens. For bacteriology, the membrane filtration method followed by polymerase chain reaction (PCR) was adopted to assess the incidence of cholera-causing and non-choleracausing Vibrio pathogens, as well as their virulence-associated genes from the two wastewater treatment plants and their receiving waterbody (River-K). Antibiotic susceptibility profiles of identified Vibrio species were determined using the disc diffusion method against a panel of xvi sixteen antibiotics commonly used as antimicrobial drugs of Vibrio infections. Multiple antibiotics resistance index (MARI) and phenotypes (MARP) were measured, and the existence of antibiotic resistance genes was evaluated by PCR using specific primer sets. Most of the physicochemical parameters measured (pH, TDS, temperature, salinity and DO) complied with the recommended standards for drinking water, while some fell short of the recommended limits (EC, turbidity, TSS, free chlorine). From the presumptive Vibrio isolates, 64.3% (476/740) were confirmed by PCR, with their Vibrio densities across all sampling points ranging between 0 and 2.7 × 104 CFU/100 mL, with high counts recorded in summer, hence their positive significant correlation (P< 0.01) with temperature. From the confirmed Vibrio isolates, only V. cholerae (53/476), V. mimicus (21/476) and V. parahaemolyticus (5/476) were detected. For virulence-associated genes, virulence genes homologous to V. cholerae virulence determinants, namely ompU (35%), TCP (14%), ACE (11%), ctx (7%) and HylA (4.5%) were widespread (independently) amongst the V. cholerae and V. mimicus species, while V. parahemolyticus isolates (100%) produced only the ToxR gene. Antibiogram profiling found resistance against some antibiotics such as Nalidixic acid (65%), Polymyxin B (43.8%) etc. The MAR indices ranged between 0 and 0.67 with 41.3% of the isolates recording MAR index values above 0.2. The results presented high degrees of MARPs ranging from four to eleven antimicrobials. For resistance gene detection, the SXT element was detected in 66% of the isolates, while cat1 (93%) was the most predominant, followed by aac (68%), ant (61%), with bla-V (7.1%) as the least detected gene. Findings from this study suggest that the wastewater effluents from the two wastewater treatment plants are potential sources of pathogenic Vibrio species and River-K contains a high quantity of pathogenic Vibrio species with fluctuating seasonal variations that reaffirm temperature as a strong reason for their abundance. The antibiotic-resistant Vibrio species isolated here carry a pool of virulence-associated genes and xvii antibiotic resistance genes, presenting a health threat to the communities that use it directly for domestic and irrigation purposes. In conclusion, some surface waters in the Eastern Cape Province, South Africa are widely contaminated with cholera-causing and non-cholera causing Vibrio pathogens; furthermore, some wastewater treatment plants are ineffective in adequately removing microbial contaminants and have become sources of pathogenic bacteria to their receiving waterbodie
- Full Text:
- Date Issued: 2019
- Authors: Gcilitshana, Onele
- Date: 2019
- Subjects: Water -- Purification -- South Africa -- Eastern Cape Effluent quality -- South Africa -- Eastern Cape
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/15145 , vital:40190
- Description: Despite technological advances in water treatment and improved sanitation in many developing countries, acute microbial diseases still thrive and continue to distress millions of people. This is due to the high number of rural dwellers that still source water for drinking and other domestic uses from contaminated rivers. In South Africa, there have been reports on waterborne disease outbreaks, and specifically in the area understudy, two records of diarrhoeal outbreaks associated with consumption of river water were reported within the last decade. All those outbreaks and previous reports on isolation of other pathogenic bacteria within the area necessitated the conduction of this study in order to identify the potential causes of the cholera-associate diarrheal outbreaks previously reported in the area and nationally. This study was designed to assess the incidence of cholera-causing and non-cholera causing pathogens in final effluents and surface waters of the Raymond Mhlaba Local Municipality, Eastern Cape Province, South Africa. RiverK which serves as a major resource for domestic activities, agricultural practices as well as an abstraction point for a potable water treatment plant was used for this study. River-K freshwater and final effluents of its two feeder wastewater treatment plants were sampled monthly, over a twelve-month period (December 2016–November 2017). For purposes of confidentiality, the names of the wastewater treatment plants and river involved are coded in this report. A total of 108 water samples were assessed for the physicochemical parameters that influence the presence of Vibrio pathogens. For bacteriology, the membrane filtration method followed by polymerase chain reaction (PCR) was adopted to assess the incidence of cholera-causing and non-choleracausing Vibrio pathogens, as well as their virulence-associated genes from the two wastewater treatment plants and their receiving waterbody (River-K). Antibiotic susceptibility profiles of identified Vibrio species were determined using the disc diffusion method against a panel of xvi sixteen antibiotics commonly used as antimicrobial drugs of Vibrio infections. Multiple antibiotics resistance index (MARI) and phenotypes (MARP) were measured, and the existence of antibiotic resistance genes was evaluated by PCR using specific primer sets. Most of the physicochemical parameters measured (pH, TDS, temperature, salinity and DO) complied with the recommended standards for drinking water, while some fell short of the recommended limits (EC, turbidity, TSS, free chlorine). From the presumptive Vibrio isolates, 64.3% (476/740) were confirmed by PCR, with their Vibrio densities across all sampling points ranging between 0 and 2.7 × 104 CFU/100 mL, with high counts recorded in summer, hence their positive significant correlation (P< 0.01) with temperature. From the confirmed Vibrio isolates, only V. cholerae (53/476), V. mimicus (21/476) and V. parahaemolyticus (5/476) were detected. For virulence-associated genes, virulence genes homologous to V. cholerae virulence determinants, namely ompU (35%), TCP (14%), ACE (11%), ctx (7%) and HylA (4.5%) were widespread (independently) amongst the V. cholerae and V. mimicus species, while V. parahemolyticus isolates (100%) produced only the ToxR gene. Antibiogram profiling found resistance against some antibiotics such as Nalidixic acid (65%), Polymyxin B (43.8%) etc. The MAR indices ranged between 0 and 0.67 with 41.3% of the isolates recording MAR index values above 0.2. The results presented high degrees of MARPs ranging from four to eleven antimicrobials. For resistance gene detection, the SXT element was detected in 66% of the isolates, while cat1 (93%) was the most predominant, followed by aac (68%), ant (61%), with bla-V (7.1%) as the least detected gene. Findings from this study suggest that the wastewater effluents from the two wastewater treatment plants are potential sources of pathogenic Vibrio species and River-K contains a high quantity of pathogenic Vibrio species with fluctuating seasonal variations that reaffirm temperature as a strong reason for their abundance. The antibiotic-resistant Vibrio species isolated here carry a pool of virulence-associated genes and xvii antibiotic resistance genes, presenting a health threat to the communities that use it directly for domestic and irrigation purposes. In conclusion, some surface waters in the Eastern Cape Province, South Africa are widely contaminated with cholera-causing and non-cholera causing Vibrio pathogens; furthermore, some wastewater treatment plants are ineffective in adequately removing microbial contaminants and have become sources of pathogenic bacteria to their receiving waterbodie
- Full Text:
- Date Issued: 2019
Investigation of the NFC technology for mobile payments and the development of a prototype payment application in the context of marginalized rural areas
- Authors: Gurajena, Caroline
- Date: 2014
- Subjects: Mobile commerce -- South Africa Mobile communication systems -- South Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10353/14071 , vital:39802
- Description: The Internet of Things (IoT) environment involves the interaction of numerous ‘things’. These ‘things’ are embedded with different kinds of technologies such as RFID technology, NFC technology and sensors. This causes IoT to bring into play many security risks apart from the ones that already exist in the current Internet, for example, embedded RFID tags can be easily triggered and send their content which could be private information. IoT also introduces internal attacks such as on-off attack, bad mouthing and white washing attacks into networks that already exist. These internal attacks cannot be solved by hard security mechanisms such as cryptographic algorithms and firewalls because they guarantee total trust. This eliminates uncertainty which should always be available where trust exist. That is, hard security mechanisms enable IoT ‘things’ to either trust another ‘thing’ completely or not and this makes them unsuitable for the IoT environment. When objects in any network are communicating, there is some element of uncertainty. Also, hard security mechanisms such as public key cryptography cause communication overheard in the already resource-constrained IoT devices and these conventional cryptography methods cannot deal with internal attacks. This brings about the need for a middleware that includes functions that will manage trust, privacy and security issues of all data exchange, communications and network connections. For IoT to be successful, the provision of trust, security and privacy measures are essential. Trust management may enhance the adoption and security measures in IoT. Trust helps in identifying trustworthy ‘things’ in the network and give ‘things’ in the network the ability to reason in all aspects concerning trust in the environment. Trust can be administered through a trust management model. This research notes that most of the trust models that have been proposed fail to address scalability challenges and lack suitable computation methods. It is on that premise that this research focuses on developing a suitable trust model for the IoT environment. The research also introduces new ways of creating relationships in IoT. This enables the creation of new cooperation opportunities in the environment. In overall, this research aimed to design and develop a generic trust and authority delegation model for the heterogonous IoT environment that is scalable and generalized to cater for the heterogeneous IoT environment. This research was conducted in three phases. The first phase reviewed literature in order to identify outstanding issues in IoT trust management and also identify the suitable computational method. This provided a critical analysis of different computational methods highlighting their advantages and limitations. In the second phase of the research, the proposed trust model was designed and tested. In the last phase, the feasibility of the proposed model was evaluated. The proposed model is based on fuzzy logic. Fuzzy logic was selected for trust computation because it is able to imitate the process of the human mind through the use of linguistic variables and it can handle uncertainty. The proposed model was tested in a simulated environment. The simulation results showed that the proposed model can identify selfish and malicious entities effectively. The results also showed that the model was able to deal with different types of behaviours of entities. The testing proved that the proposed trust model can support decision making in IoT based on trust. The results from the evaluation show that this research ameliorates the design and development of trust management solutions for the IoT environment.
- Full Text:
- Date Issued: 2014
- Authors: Gurajena, Caroline
- Date: 2014
- Subjects: Mobile commerce -- South Africa Mobile communication systems -- South Africa
- Language: English
- Type: Thesis , Doctoral , DPhil
- Identifier: http://hdl.handle.net/10353/14071 , vital:39802
- Description: The Internet of Things (IoT) environment involves the interaction of numerous ‘things’. These ‘things’ are embedded with different kinds of technologies such as RFID technology, NFC technology and sensors. This causes IoT to bring into play many security risks apart from the ones that already exist in the current Internet, for example, embedded RFID tags can be easily triggered and send their content which could be private information. IoT also introduces internal attacks such as on-off attack, bad mouthing and white washing attacks into networks that already exist. These internal attacks cannot be solved by hard security mechanisms such as cryptographic algorithms and firewalls because they guarantee total trust. This eliminates uncertainty which should always be available where trust exist. That is, hard security mechanisms enable IoT ‘things’ to either trust another ‘thing’ completely or not and this makes them unsuitable for the IoT environment. When objects in any network are communicating, there is some element of uncertainty. Also, hard security mechanisms such as public key cryptography cause communication overheard in the already resource-constrained IoT devices and these conventional cryptography methods cannot deal with internal attacks. This brings about the need for a middleware that includes functions that will manage trust, privacy and security issues of all data exchange, communications and network connections. For IoT to be successful, the provision of trust, security and privacy measures are essential. Trust management may enhance the adoption and security measures in IoT. Trust helps in identifying trustworthy ‘things’ in the network and give ‘things’ in the network the ability to reason in all aspects concerning trust in the environment. Trust can be administered through a trust management model. This research notes that most of the trust models that have been proposed fail to address scalability challenges and lack suitable computation methods. It is on that premise that this research focuses on developing a suitable trust model for the IoT environment. The research also introduces new ways of creating relationships in IoT. This enables the creation of new cooperation opportunities in the environment. In overall, this research aimed to design and develop a generic trust and authority delegation model for the heterogonous IoT environment that is scalable and generalized to cater for the heterogeneous IoT environment. This research was conducted in three phases. The first phase reviewed literature in order to identify outstanding issues in IoT trust management and also identify the suitable computational method. This provided a critical analysis of different computational methods highlighting their advantages and limitations. In the second phase of the research, the proposed trust model was designed and tested. In the last phase, the feasibility of the proposed model was evaluated. The proposed model is based on fuzzy logic. Fuzzy logic was selected for trust computation because it is able to imitate the process of the human mind through the use of linguistic variables and it can handle uncertainty. The proposed model was tested in a simulated environment. The simulation results showed that the proposed model can identify selfish and malicious entities effectively. The results also showed that the model was able to deal with different types of behaviours of entities. The testing proved that the proposed trust model can support decision making in IoT based on trust. The results from the evaluation show that this research ameliorates the design and development of trust management solutions for the IoT environment.
- Full Text:
- Date Issued: 2014
Management practices, milk quality, haemato-chemical biomarkers of free ranging pregnant goats from three genotypes and linear body measurements of their respective kids
- Idamokoro, Emrobowansan Monday
- Authors: Idamokoro, Emrobowansan Monday
- Date: 2016
- Subjects: Milk--Quality Biochemical markers Goat milk
- Language: English
- Type: Thesis , Doctoral , Animal Science
- Identifier: http://hdl.handle.net/10353/11548 , vital:39082
- Description: The broad objective of this study was to assess farmers’ perceptions on the welfare and management practices of pregnant goats and to determine the effect of genotypes and physiological status on doe’s performance (blood metabolites and milk quality) and their respective kid’s linear body measurements of goats reared in an extensive system of production. A survey was conducted among 153 goat farmers to assess their perception on goat mortality and management practices during and after gestation period. The results from the survey showed that 98.7percent of the farmers depended on pastures to feed their pregnant and lactating does. Majority of the farmers (59.9percent) did not vaccinate their dams against diseases before using them for breeding purposes. An aggregate of 77.8percent respondents allowed their does to mate freely on the veld. Most of the respondents (75.2percent) kept their pregnant goats together with other flocks in mud floor pen (kraals) fenced with tree branches. Farmers indicated that, poor diet (32percent), disease (24 percent) and predators (15percent) were some factors that cause mortality in pregnant does. About 66.7percent respondents perceived that, quality diet is a factor that can boost the reproductive performance of pregnant goats. The haemato-biochemical parameters of Nguni, Boer and Non-descript goats at late and early lactation revealed that, Nguni goat had higher (P ˂ 0.05) values of red cell counts (13.37 x1011/L), haemoglobin (9.07 g/dL) and creatine kinase (269.54 U/L) compared to Boer (9.96 x 1011/L, 7.94 g/ dL and 132.16 U/L) and Non-descript goats (12.98 x 1011 /L, 7.85 g/ dL and 143.50 U/L), respectively. The Nguni goats also had higher (P ˂ 0.05) mean values of glucose (3.38 mmol/L), sodium (141.66 mmol/L) and urea content (5.51 mmol/L) compared to Boer (2.96 mmol/L, 135.70 mmol/L and 4.45 mmol/L) and Non-descript goats (2.50 mmol/L, 141.31 mmol/L and 3.90 mmol/L), respectively. The results of blood metabolites also revealed that, there was significant difference (P < 0.05) in the physiological status of goats. The late stage of pregnancy had higher mean values of red cell counts (14.44 x 1011 /L), haemoglobin (8.57 g/dL), haematocrit (0.67 L/L), glucose (3.12 mmol/L), sodium (141.74 mmol/L) and calcium content (2.37 mmol/L) compared to the early stage of lactation (9.77 x 1011/ L, 8.00 g /dL, 0.55 L/L, 2.77 mmol/L, 137.37 mmol/L and 2.23 mmol/L), respectively. Furthermore, it was revealed that, Nguni goats produced (1.2±0.09, 1.3±0.11 and 1.2±0.07 litres per day) more milk (P ˂ 0.05) at early, mid and late stages of lactation than Boer (0.6±0.10, 1.0±0.17 and 0.6±0.09 litres per day) and Non-descript (0.3±0.10, 0.3±0.12 and 0.3±0.09 litres per day) goats. There was significant difference (P ˂ 0.05) of genotypes on milk fat, milk magnesium and sodium contents among Nguni, Boer and Non-descript goats. Lactation stages had a significant effect (P ˂ 0.05) on some milk compositions (fat, protein, lactose and solid non-fat) and mineral profiles (Ca, Mg, Na, K, and Fe) of Nguni goats. Lactation stages had a significant effect (P ˂ 0.05) on fat, protein, lactose and solid non-fat content and mineral profiles (Ca, Mg, Na, K, and Fe) of Nguni goats. Milk protein content of Nguni goat was positively correlated to milk fat but, not in Boer and Non-descript goats. Milk quality parameters from the three goat genotypes possessed relatively moderate milk compositions and mineral profiles which is comparable to some exotic goat breeds. Nguni kids had higher mean weights (7.36 kg, 11.85 kg and 13.72 kg) than the Boer kids (5.20 kg, 7.18 kg and 10.20 kg) and the Non-descript goat kids (5.23 kg, 6.19 kg and 8.01 kg) at weeks 4, 6 and 8 after parturition, respectively. In terms of height at withers, the Nguni kids had higher mean values in heights (41.92 cm, 44.71 cm, 49.38 cm and 55.75 cm) than the Boer kids (35.67 cm, 37.14 cm, 42.40 and 44.20 cm) and the Non-descript kids (36.38 cm, 40.20 cm, 41.14 cm and 43.50 cm) at week 2, 4, 6 and 8 after parturition, respectively. Conversely, there was a positive correlation (P ˂ 0.05) between body lengths and live weights of Nguni goats and not in Boer and Non-descript goats. It was concluded from this study that, the indigenous Nguni, Boer and Non-descript pregnant goats were managed in poor conditions by communal farmers and the perceived causes of mortality of pregnant goats among others include poor feed, diseases and predators. In addition, the Nguni goats had higher mean values in some haematological parameters (red cell counts and haemoglobin) and serum biochemical profiles (glucose, sodium, urea and creatine kinase) than Boer and Non-descript goats during the periods of investigation. Nguni goats also produced more milk at the early and late stages of lactation compared to the Boer and Non-descript goats. The Non-descript goats had a higher mean value of milk fat compared to Nguni and Boer goats. Likewise, the Boer goats were observed to have higher mean value of milk magnesium and sodium content compared to Nguni and Non-descript goats. In terms of body weights and linear body measurments, the Nguni goat kids were superior compared to Boer and Non-descript goats.
- Full Text: false
- Date Issued: 2016
- Authors: Idamokoro, Emrobowansan Monday
- Date: 2016
- Subjects: Milk--Quality Biochemical markers Goat milk
- Language: English
- Type: Thesis , Doctoral , Animal Science
- Identifier: http://hdl.handle.net/10353/11548 , vital:39082
- Description: The broad objective of this study was to assess farmers’ perceptions on the welfare and management practices of pregnant goats and to determine the effect of genotypes and physiological status on doe’s performance (blood metabolites and milk quality) and their respective kid’s linear body measurements of goats reared in an extensive system of production. A survey was conducted among 153 goat farmers to assess their perception on goat mortality and management practices during and after gestation period. The results from the survey showed that 98.7percent of the farmers depended on pastures to feed their pregnant and lactating does. Majority of the farmers (59.9percent) did not vaccinate their dams against diseases before using them for breeding purposes. An aggregate of 77.8percent respondents allowed their does to mate freely on the veld. Most of the respondents (75.2percent) kept their pregnant goats together with other flocks in mud floor pen (kraals) fenced with tree branches. Farmers indicated that, poor diet (32percent), disease (24 percent) and predators (15percent) were some factors that cause mortality in pregnant does. About 66.7percent respondents perceived that, quality diet is a factor that can boost the reproductive performance of pregnant goats. The haemato-biochemical parameters of Nguni, Boer and Non-descript goats at late and early lactation revealed that, Nguni goat had higher (P ˂ 0.05) values of red cell counts (13.37 x1011/L), haemoglobin (9.07 g/dL) and creatine kinase (269.54 U/L) compared to Boer (9.96 x 1011/L, 7.94 g/ dL and 132.16 U/L) and Non-descript goats (12.98 x 1011 /L, 7.85 g/ dL and 143.50 U/L), respectively. The Nguni goats also had higher (P ˂ 0.05) mean values of glucose (3.38 mmol/L), sodium (141.66 mmol/L) and urea content (5.51 mmol/L) compared to Boer (2.96 mmol/L, 135.70 mmol/L and 4.45 mmol/L) and Non-descript goats (2.50 mmol/L, 141.31 mmol/L and 3.90 mmol/L), respectively. The results of blood metabolites also revealed that, there was significant difference (P < 0.05) in the physiological status of goats. The late stage of pregnancy had higher mean values of red cell counts (14.44 x 1011 /L), haemoglobin (8.57 g/dL), haematocrit (0.67 L/L), glucose (3.12 mmol/L), sodium (141.74 mmol/L) and calcium content (2.37 mmol/L) compared to the early stage of lactation (9.77 x 1011/ L, 8.00 g /dL, 0.55 L/L, 2.77 mmol/L, 137.37 mmol/L and 2.23 mmol/L), respectively. Furthermore, it was revealed that, Nguni goats produced (1.2±0.09, 1.3±0.11 and 1.2±0.07 litres per day) more milk (P ˂ 0.05) at early, mid and late stages of lactation than Boer (0.6±0.10, 1.0±0.17 and 0.6±0.09 litres per day) and Non-descript (0.3±0.10, 0.3±0.12 and 0.3±0.09 litres per day) goats. There was significant difference (P ˂ 0.05) of genotypes on milk fat, milk magnesium and sodium contents among Nguni, Boer and Non-descript goats. Lactation stages had a significant effect (P ˂ 0.05) on some milk compositions (fat, protein, lactose and solid non-fat) and mineral profiles (Ca, Mg, Na, K, and Fe) of Nguni goats. Lactation stages had a significant effect (P ˂ 0.05) on fat, protein, lactose and solid non-fat content and mineral profiles (Ca, Mg, Na, K, and Fe) of Nguni goats. Milk protein content of Nguni goat was positively correlated to milk fat but, not in Boer and Non-descript goats. Milk quality parameters from the three goat genotypes possessed relatively moderate milk compositions and mineral profiles which is comparable to some exotic goat breeds. Nguni kids had higher mean weights (7.36 kg, 11.85 kg and 13.72 kg) than the Boer kids (5.20 kg, 7.18 kg and 10.20 kg) and the Non-descript goat kids (5.23 kg, 6.19 kg and 8.01 kg) at weeks 4, 6 and 8 after parturition, respectively. In terms of height at withers, the Nguni kids had higher mean values in heights (41.92 cm, 44.71 cm, 49.38 cm and 55.75 cm) than the Boer kids (35.67 cm, 37.14 cm, 42.40 and 44.20 cm) and the Non-descript kids (36.38 cm, 40.20 cm, 41.14 cm and 43.50 cm) at week 2, 4, 6 and 8 after parturition, respectively. Conversely, there was a positive correlation (P ˂ 0.05) between body lengths and live weights of Nguni goats and not in Boer and Non-descript goats. It was concluded from this study that, the indigenous Nguni, Boer and Non-descript pregnant goats were managed in poor conditions by communal farmers and the perceived causes of mortality of pregnant goats among others include poor feed, diseases and predators. In addition, the Nguni goats had higher mean values in some haematological parameters (red cell counts and haemoglobin) and serum biochemical profiles (glucose, sodium, urea and creatine kinase) than Boer and Non-descript goats during the periods of investigation. Nguni goats also produced more milk at the early and late stages of lactation compared to the Boer and Non-descript goats. The Non-descript goats had a higher mean value of milk fat compared to Nguni and Boer goats. Likewise, the Boer goats were observed to have higher mean value of milk magnesium and sodium content compared to Nguni and Non-descript goats. In terms of body weights and linear body measurments, the Nguni goat kids were superior compared to Boer and Non-descript goats.
- Full Text: false
- Date Issued: 2016
Effect of increasing fossil shell flour levels on digestive and metabolic utilization, health, body weight change and wool production, and quality in Dohne-Merino wethers
- Authors: Ikusika, Olusegun Oyebade
- Date: 2020
- Subjects: Merino sheep Sheep -- Quality
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/18465 , vital:42542
- Description: The study's broad objective was to assess growth performance, blood and parasitic profiles, wool parameters, methane emission, and nutritional status of Dohne-Merino wethers fed diets supplemented with varying levels of fossil shell flour. Twenty-four Dohne-Merino wethers, averagely weighing 20.0±1.50 kg, were divided into four groups and used in this study. The effects of varying inclusion levels of fossil shell flour (FSF) (0, 2, 4, and 6 %) on feed intake, water intake, nutrient digestibility, N-retention, hematobiochemical and parasitic profiles, body condition scores, feed preference, wool parameters and methane output were determined. The influence of FSF's varying inclusion levels on fermentation parameters, in vitro true digestibility, and relative feed values were also determined. Wethers fed with 4% FSF inclusion level diet showed the highest (P<0.05) values for dry matter intake, average daily weight gain, N retention, (Nitrogen retention) and apparent digestibility of crude protein (CP), Ether Extract (EE) and Ash 6 % (P < 0.05). The urinary N and fecal N were lowest in wethers fed 4% FSF inclusion level and highest in those fed on diets without FSF (P < 0.05). Water intake was highest in wethers fed 0% FSF diet, followed by those fed on 4% and lowest in 6% FSF (P< 0.05). There was a significant increase in white blood cell counts in wethers fed on a diet with 4% and 6% FSF inclusion levels from day 10 to 100 compared to wethers fed on a diet with 0% and 2% FSF (P <0.05). Red blood cell counts also increased significantly in wethers fed on a diet containing 4% FSF, but a slight increase in wethers with 6 % FSF diet, throughout the experimental period (P < 0.05). Blood urea was highest in wethers fed 0% FSF inclusion level and lowest in 6% at day 30 to day 100. Wethers on 4% FSF diet showed an increase in blood urea from day 30 to day 100 (P < 0.05) while wethers on 0% and 2% remained unchanged (P<0.05) during this period and not different (P > 0.05) from wethers on 4% FSF as well. The total protein concentration, albumin, total bilirubin, Na, K, glucose, cholesterol, and liver enzymes were normal for wethers. However, serum creatinine level was lower in wethers fed on 4% FSF than those on 0% FSF (P < 0.01). Haemonchus and Coccidian fecal egg counts were low in wethers fed diets with 2%, 4%, and 6 % FSF (P < 0.01) compared 11 with wethers fed with 0% FSF inclusion level during the same period. The body condition score of wethers fed on diets with 2%, 4%, and 6% FSF inclusion levels were higher than those on 0% (P < 0.05). Wool yield, staple length, the coefficient variation of the fibre diameter, and fibre of wethers fed on diets with FSF were higher than those without FSF (P < 0.05). The fibre diameter of the wethers fed on FSF supplemented diets was the same as those on 0 % FSF (P > 0.05). The wethers spent more time on FSF supplemented diets and consumed more feed compared to that without FSF supplemented (P < 0.05). The levels of FSF inclusion in the diet affected the enteric methane output (ppm-m), where 4 % FSF had the highest enteric methane output while wethers on 2 % FSF had the lowest methane output (P < 0.05). Resting wethers produced more methane (g/day) than those feeding or standing (P < 0.05). Increasing levels of FSF did not affect ruminal temperature and pH. Ammonia-N increased with increasing FSF except in wethers fed on a diet with 4% FSF (P < 0.01). The total molar concentrations of the wethers' volatile fatty acids decreased with increasing FSF levels (P > 0.05). The acetic propionic ratio of the wethers also decreased except at a 4% inclusion level. The in vitro true digestibility dry matter (IVTDDM), in vitro true digestibility neutral detergent fibre (IVTDNDF), and in vitro true digestibility acid detergent fibre (IVTDADF) of the wethers decreased up to 4% FSF inclusion but tended to increase at 6% inclusion. This study's result as one of the pioneer studies in Dohne-Marino wethers showed that FSF treatment has the potential to improve the nutritional status of the animal and the animal performance and wool quality. Health-wise, FSF decrease nematode population and boost animal immunity as seen in RBC and WBC counts. It also can play a major role in protecting the environment, as seen in its reduction in feacal and urinary nitrogen, which is heavily involved in environmental pollution. Result also confirmed that the best period to target for methane mitigation in ruminants is the resting period. In conclusion, the inclusion of FSF in the diet of Dohne-Merino wethers has the potential to improve the overall performance, with a 4% FSF inclusion level having optimal productivity. However, future research is required to investigate FSF's effect on meat quality, rumen microbial community, in-vivo digestibility, and milk production.
- Full Text:
- Date Issued: 2020
- Authors: Ikusika, Olusegun Oyebade
- Date: 2020
- Subjects: Merino sheep Sheep -- Quality
- Language: English
- Type: Thesis , Doctoral , PhD
- Identifier: http://hdl.handle.net/10353/18465 , vital:42542
- Description: The study's broad objective was to assess growth performance, blood and parasitic profiles, wool parameters, methane emission, and nutritional status of Dohne-Merino wethers fed diets supplemented with varying levels of fossil shell flour. Twenty-four Dohne-Merino wethers, averagely weighing 20.0±1.50 kg, were divided into four groups and used in this study. The effects of varying inclusion levels of fossil shell flour (FSF) (0, 2, 4, and 6 %) on feed intake, water intake, nutrient digestibility, N-retention, hematobiochemical and parasitic profiles, body condition scores, feed preference, wool parameters and methane output were determined. The influence of FSF's varying inclusion levels on fermentation parameters, in vitro true digestibility, and relative feed values were also determined. Wethers fed with 4% FSF inclusion level diet showed the highest (P<0.05) values for dry matter intake, average daily weight gain, N retention, (Nitrogen retention) and apparent digestibility of crude protein (CP), Ether Extract (EE) and Ash 6 % (P < 0.05). The urinary N and fecal N were lowest in wethers fed 4% FSF inclusion level and highest in those fed on diets without FSF (P < 0.05). Water intake was highest in wethers fed 0% FSF diet, followed by those fed on 4% and lowest in 6% FSF (P< 0.05). There was a significant increase in white blood cell counts in wethers fed on a diet with 4% and 6% FSF inclusion levels from day 10 to 100 compared to wethers fed on a diet with 0% and 2% FSF (P <0.05). Red blood cell counts also increased significantly in wethers fed on a diet containing 4% FSF, but a slight increase in wethers with 6 % FSF diet, throughout the experimental period (P < 0.05). Blood urea was highest in wethers fed 0% FSF inclusion level and lowest in 6% at day 30 to day 100. Wethers on 4% FSF diet showed an increase in blood urea from day 30 to day 100 (P < 0.05) while wethers on 0% and 2% remained unchanged (P<0.05) during this period and not different (P > 0.05) from wethers on 4% FSF as well. The total protein concentration, albumin, total bilirubin, Na, K, glucose, cholesterol, and liver enzymes were normal for wethers. However, serum creatinine level was lower in wethers fed on 4% FSF than those on 0% FSF (P < 0.01). Haemonchus and Coccidian fecal egg counts were low in wethers fed diets with 2%, 4%, and 6 % FSF (P < 0.01) compared 11 with wethers fed with 0% FSF inclusion level during the same period. The body condition score of wethers fed on diets with 2%, 4%, and 6% FSF inclusion levels were higher than those on 0% (P < 0.05). Wool yield, staple length, the coefficient variation of the fibre diameter, and fibre of wethers fed on diets with FSF were higher than those without FSF (P < 0.05). The fibre diameter of the wethers fed on FSF supplemented diets was the same as those on 0 % FSF (P > 0.05). The wethers spent more time on FSF supplemented diets and consumed more feed compared to that without FSF supplemented (P < 0.05). The levels of FSF inclusion in the diet affected the enteric methane output (ppm-m), where 4 % FSF had the highest enteric methane output while wethers on 2 % FSF had the lowest methane output (P < 0.05). Resting wethers produced more methane (g/day) than those feeding or standing (P < 0.05). Increasing levels of FSF did not affect ruminal temperature and pH. Ammonia-N increased with increasing FSF except in wethers fed on a diet with 4% FSF (P < 0.01). The total molar concentrations of the wethers' volatile fatty acids decreased with increasing FSF levels (P > 0.05). The acetic propionic ratio of the wethers also decreased except at a 4% inclusion level. The in vitro true digestibility dry matter (IVTDDM), in vitro true digestibility neutral detergent fibre (IVTDNDF), and in vitro true digestibility acid detergent fibre (IVTDADF) of the wethers decreased up to 4% FSF inclusion but tended to increase at 6% inclusion. This study's result as one of the pioneer studies in Dohne-Marino wethers showed that FSF treatment has the potential to improve the nutritional status of the animal and the animal performance and wool quality. Health-wise, FSF decrease nematode population and boost animal immunity as seen in RBC and WBC counts. It also can play a major role in protecting the environment, as seen in its reduction in feacal and urinary nitrogen, which is heavily involved in environmental pollution. Result also confirmed that the best period to target for methane mitigation in ruminants is the resting period. In conclusion, the inclusion of FSF in the diet of Dohne-Merino wethers has the potential to improve the overall performance, with a 4% FSF inclusion level having optimal productivity. However, future research is required to investigate FSF's effect on meat quality, rumen microbial community, in-vivo digestibility, and milk production.
- Full Text:
- Date Issued: 2020