The biology and molecular ecology of floating sulphur biofilms
- Authors: Bowker, Michelle Louise
- Date: 2002
- Subjects: Biofilms , Microbial ecology , Sulfur
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4056 , http://hdl.handle.net/10962/d1004117 , Biofilms , Microbial ecology , Sulfur
- Description: Floating sulphur biofilms have been observed to occur on sulphate-containing natural systems and waste stabilization ponds. It has been postulated that these biofilms form on the surface of the water because sulphate reducing bacteria present in the bottom layers of the water body reduce sulphate to sulphide which then diffuses upwards and is oxidized under the correct redox conditions to sulphur by sulphide oxidizing bacteria. Very little information exists on these complex floating systems and in order to study them further, model systems were designed. The Baffle Reactor was successfully used to cultivate floating sulphur biofilms. Conditions within the reactor could be closely scrutinized in the laboratory and it was found that sulphate levels decreased, sulphide levels increased and that sulphur was produced over a period of 2 weeks. The success of this system led to it being scaled-up and currently a method to harvest sulphur from the biofilm is under development. It is thought that biofilms are highly complex, heterogeneous structures with different bacteria distributed in different layers. Preliminary work suggested that bacteria were differentially distributed along nutrient and oxygen gradients within the biofilm. Biofilms are very thin structures and therefore difficult to study and Gradient systems were developed in an attempt to spatially separate the biofilm species into functional layers. Gradient Tubes were designed; these provided a gradient of high-sulphide, low oxygen conditions to high-oxygen, low-sulphide conditions. Bacteria were observed to grow in different layers of these systems. The Gradient Tubes could be sectioned and the chemical characteristics of each section as well as the species present could be determined. Silicon Tubular Bioreactors were also developed and these were very efficient at producing large amounts of sulphur under strictly controlled redox conditions. Microscopy and molecular methods including the amplification of a section of Ribosomal Ribonucleic acid by Polymerase Chain Reaction were used in an attempt to characterize the populations present in these biofilm systems. Denaturing Gradient Gel Electrophoresis was used to create band profiles of the populations; individual bands were excised from the gels and sequenced. Identified species included Ectothiorhodospira sp., Dethiosulfovibrio russensis, Pseudomonas geniculata, Thiobacillus baregensis and Halothiobacillus kellyi.
- Full Text:
- Date Issued: 2002
- Authors: Bowker, Michelle Louise
- Date: 2002
- Subjects: Biofilms , Microbial ecology , Sulfur
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:4056 , http://hdl.handle.net/10962/d1004117 , Biofilms , Microbial ecology , Sulfur
- Description: Floating sulphur biofilms have been observed to occur on sulphate-containing natural systems and waste stabilization ponds. It has been postulated that these biofilms form on the surface of the water because sulphate reducing bacteria present in the bottom layers of the water body reduce sulphate to sulphide which then diffuses upwards and is oxidized under the correct redox conditions to sulphur by sulphide oxidizing bacteria. Very little information exists on these complex floating systems and in order to study them further, model systems were designed. The Baffle Reactor was successfully used to cultivate floating sulphur biofilms. Conditions within the reactor could be closely scrutinized in the laboratory and it was found that sulphate levels decreased, sulphide levels increased and that sulphur was produced over a period of 2 weeks. The success of this system led to it being scaled-up and currently a method to harvest sulphur from the biofilm is under development. It is thought that biofilms are highly complex, heterogeneous structures with different bacteria distributed in different layers. Preliminary work suggested that bacteria were differentially distributed along nutrient and oxygen gradients within the biofilm. Biofilms are very thin structures and therefore difficult to study and Gradient systems were developed in an attempt to spatially separate the biofilm species into functional layers. Gradient Tubes were designed; these provided a gradient of high-sulphide, low oxygen conditions to high-oxygen, low-sulphide conditions. Bacteria were observed to grow in different layers of these systems. The Gradient Tubes could be sectioned and the chemical characteristics of each section as well as the species present could be determined. Silicon Tubular Bioreactors were also developed and these were very efficient at producing large amounts of sulphur under strictly controlled redox conditions. Microscopy and molecular methods including the amplification of a section of Ribosomal Ribonucleic acid by Polymerase Chain Reaction were used in an attempt to characterize the populations present in these biofilm systems. Denaturing Gradient Gel Electrophoresis was used to create band profiles of the populations; individual bands were excised from the gels and sequenced. Identified species included Ectothiorhodospira sp., Dethiosulfovibrio russensis, Pseudomonas geniculata, Thiobacillus baregensis and Halothiobacillus kellyi.
- Full Text:
- Date Issued: 2002
The structure and microbiology of floating sulphide oxidising biofilms
- Authors: Gilfillan, Joanne Criseyde
- Date: 2000
- Subjects: Biofilms , Sulfides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3903 , http://hdl.handle.net/10962/d1003962 , Biofilms , Sulfides
- Description: Floating sulphur biofilms are observed as surface layers in numerous aquatic sulphide-rich environments, and apparently play an important role in the cycling of sulphur in its various oxidation states. In addition to the conversion of sulphide to sulphur and/or sulphate species, it has been suspected that subsequent reduction back to sulphide may occur within the floating sulphur biofi1m in organic-rich environments. The use of sulphur biofilms for the harvesting of elemental sulphur from wastewater treatment systems has also been suggested. There is, however, little documented information in the literature on the structure of floating sulphur biofilms, or the microbial species responsible for their occurrence. In this study, floating sulphur biofilms were generated in a continuous flow baflle reactor and their structure was examined using scanning electron microscopy. It was found that they occur as layered structures with morphologically distinct bacterial forms present in different layers of the biofilm. The biofilpl structure was also found to be dynamic, with structural changes observed as feed conditions were altered. An enriched culture derived from the biofi1m demonstrated rates of sulphide oxidation comparable to values reported in the literature for liquid culture systems. The microbiology of the biofi1m was studied using traditional plate culture techniques and analysis ofrRNA genes. Identification of plate culture isolates as representatives of the biofi1m community proved to be limited, leading to a PeR-based cloning approach. The majority of the organisms present in the sulphur biofi1m were classified as species in the genus ~eudomonas, and a number of other bacterial species whose sulphide oxidising capacity has been noted previously. Surprisingly, only 2% of the clone library consisted of Thiobacillus spp., and no sulphate reducing bacteria were identified in the biofilm at all. These results indicate that in organic sulphide-rich environments facultative chemolithoheterotrophic bacterial forms predominate in floating sulphur biofilms, and that the complete biological cycling of sulphur may not occur in these systems.
- Full Text:
- Date Issued: 2000
- Authors: Gilfillan, Joanne Criseyde
- Date: 2000
- Subjects: Biofilms , Sulfides
- Language: English
- Type: Thesis , Masters , MSc
- Identifier: vital:3903 , http://hdl.handle.net/10962/d1003962 , Biofilms , Sulfides
- Description: Floating sulphur biofilms are observed as surface layers in numerous aquatic sulphide-rich environments, and apparently play an important role in the cycling of sulphur in its various oxidation states. In addition to the conversion of sulphide to sulphur and/or sulphate species, it has been suspected that subsequent reduction back to sulphide may occur within the floating sulphur biofi1m in organic-rich environments. The use of sulphur biofilms for the harvesting of elemental sulphur from wastewater treatment systems has also been suggested. There is, however, little documented information in the literature on the structure of floating sulphur biofilms, or the microbial species responsible for their occurrence. In this study, floating sulphur biofilms were generated in a continuous flow baflle reactor and their structure was examined using scanning electron microscopy. It was found that they occur as layered structures with morphologically distinct bacterial forms present in different layers of the biofilm. The biofilpl structure was also found to be dynamic, with structural changes observed as feed conditions were altered. An enriched culture derived from the biofi1m demonstrated rates of sulphide oxidation comparable to values reported in the literature for liquid culture systems. The microbiology of the biofi1m was studied using traditional plate culture techniques and analysis ofrRNA genes. Identification of plate culture isolates as representatives of the biofi1m community proved to be limited, leading to a PeR-based cloning approach. The majority of the organisms present in the sulphur biofi1m were classified as species in the genus ~eudomonas, and a number of other bacterial species whose sulphide oxidising capacity has been noted previously. Surprisingly, only 2% of the clone library consisted of Thiobacillus spp., and no sulphate reducing bacteria were identified in the biofilm at all. These results indicate that in organic sulphide-rich environments facultative chemolithoheterotrophic bacterial forms predominate in floating sulphur biofilms, and that the complete biological cycling of sulphur may not occur in these systems.
- Full Text:
- Date Issued: 2000
Settlement and metamorphosis in the veliger larvae of the South African abalone Haliotis midae exposed to ambient grown biofilms treated with conspecific mucous
- Authors: Van Staden, Jefferson Luke
- Date: 2021-10-29
- Subjects: Haliotis midae , Biofilms , Haliotis midae Larvae Behavior , Haliotis midae Metamorphosis , Biosecurity , Aquaculture , Metamorphosis , Attachment mechanisms (Biology) , Mucous
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/192187 , vital:45203
- Description: The South African abalone, Haliotis midae, is a commercially important species of mollusc which contributes significantly to the value of the South African mariculture industry. One of the primary challenges experienced by abalone farmers is the consistent production of juvenile abalone (spat) in sufficient volumes to keep stocking farms and facilitate expansion of the industry. One of the key production bottlenecks of H. midae is achieving adequate levels of larval attachment and metamorphosis (settlement). The larvae of H. midae are settled on polycarbonate plates which have been pre-conditioned with biofilms in seawater which is pumped ashore onto farms. The seasonal variability in settlement success reported by hatchery managers in South Africa is hypothesised to be as a result of different diatom species compositions colonising the settlement plates at different times of the year, with settlement success being lowest during the winter months. The following study investigated whether the addition of conspecific mucous to biofilms could result in elevated settlement success, and whether there was potential for sterilisation of this mucous. A novel method of mucous application, spraying it onto the plates as opposed to pre-grazing, was tested in settlement assays and the trials revealed the following results: • The addition of H. midae mucous induced significantly more larvae to attach to settlement plates, when mucous was harvested around the spawning season. • Elevated attachment of larvae on mucous treated plates did not result in more post-larvae occupying the plates at the end of trials, and increased mortality is likely attributed to introduction of pathogens in conjunction with mucous. • No increase in the final proportion of settled larvae which had metamorphosed or the rate at which they metamorphosed was observed between mucous application treatments and biofilm only treatments. Subsequent trials assessed whether methods of mucous handling could reduce the biosecurity risk associated with mucous use, and so mucous was either UV irradiated or autoclaved. These trials revealed the following findings: • No difference in attachment was seen between any treatments, including the untreated mucous. This is contrary to the findings of our initial experiments and illustrates that the attachment-inducing properties within mucous may be seasonally expressed. ii • Numbers of observed larvae/post-larvae on plates applied with UV and autoclaved mucous where less stable than biofilms only, especially in the second trial, illustrating that mucous still presents a biosecurity risk even after undergoing these handling methods as it may act as a substrate on which pathogenic bacteria could colonise. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
- Authors: Van Staden, Jefferson Luke
- Date: 2021-10-29
- Subjects: Haliotis midae , Biofilms , Haliotis midae Larvae Behavior , Haliotis midae Metamorphosis , Biosecurity , Aquaculture , Metamorphosis , Attachment mechanisms (Biology) , Mucous
- Language: English
- Type: Master's theses , text
- Identifier: http://hdl.handle.net/10962/192187 , vital:45203
- Description: The South African abalone, Haliotis midae, is a commercially important species of mollusc which contributes significantly to the value of the South African mariculture industry. One of the primary challenges experienced by abalone farmers is the consistent production of juvenile abalone (spat) in sufficient volumes to keep stocking farms and facilitate expansion of the industry. One of the key production bottlenecks of H. midae is achieving adequate levels of larval attachment and metamorphosis (settlement). The larvae of H. midae are settled on polycarbonate plates which have been pre-conditioned with biofilms in seawater which is pumped ashore onto farms. The seasonal variability in settlement success reported by hatchery managers in South Africa is hypothesised to be as a result of different diatom species compositions colonising the settlement plates at different times of the year, with settlement success being lowest during the winter months. The following study investigated whether the addition of conspecific mucous to biofilms could result in elevated settlement success, and whether there was potential for sterilisation of this mucous. A novel method of mucous application, spraying it onto the plates as opposed to pre-grazing, was tested in settlement assays and the trials revealed the following results: • The addition of H. midae mucous induced significantly more larvae to attach to settlement plates, when mucous was harvested around the spawning season. • Elevated attachment of larvae on mucous treated plates did not result in more post-larvae occupying the plates at the end of trials, and increased mortality is likely attributed to introduction of pathogens in conjunction with mucous. • No increase in the final proportion of settled larvae which had metamorphosed or the rate at which they metamorphosed was observed between mucous application treatments and biofilm only treatments. Subsequent trials assessed whether methods of mucous handling could reduce the biosecurity risk associated with mucous use, and so mucous was either UV irradiated or autoclaved. These trials revealed the following findings: • No difference in attachment was seen between any treatments, including the untreated mucous. This is contrary to the findings of our initial experiments and illustrates that the attachment-inducing properties within mucous may be seasonally expressed. ii • Numbers of observed larvae/post-larvae on plates applied with UV and autoclaved mucous where less stable than biofilms only, especially in the second trial, illustrating that mucous still presents a biosecurity risk even after undergoing these handling methods as it may act as a substrate on which pathogenic bacteria could colonise. , Thesis (MSc) -- Faculty of Science, Ichthyology and Fisheries Science, 2021
- Full Text:
- Date Issued: 2021-10-29
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