Enhanced Optical Limiting Behavior of an Indium Phthalocyanine–Single-Walled Carbon Nanotube Composite
- Sanusi, Kayode, Amuhaya, Edith K, Nyokong, Tebello
- Authors: Sanusi, Kayode , Amuhaya, Edith K , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/193871 , vital:45401 , xlink:href="https://doi.org/10.1021/jp501469e "
- Description: The nonlinear optical behavior of 2(3),9(10),16(17),23(24)-tetrakis-(4-aminophenoxy) phthalocyaninato indium (III) chloride (2) and its carbon nanotube composite in dimethylsulfoxide (DMSO) and dimethylformamide (DMF) solutions is described. The nonlinear third-order susceptibility and second-order hyperpolarizability values are also reported. A large nonlinear absorption that increased on covalent linking with single-walled carbon nanotubes (SWCNTs) was observed for the compound in DMSO. The nanosecond nonlinear absorption and the optical limiting behavior of this complex are shown to be dominated by a strong excited state absorption from a two-photon pumped state. The optical limiter using the new nanocomposite material (SWCNT-2) in the appropriate solvent showed a much lower threshold for optical limiting together with a much lower transmission at high fluences than previously reported nanocomposite limiters. The optical properties of the phthalocyanine and its conjugate were found to show high sensitivity toward the change of solvent matrix.
- Full Text:
- Date Issued: 2014
- Authors: Sanusi, Kayode , Amuhaya, Edith K , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/193871 , vital:45401 , xlink:href="https://doi.org/10.1021/jp501469e "
- Description: The nonlinear optical behavior of 2(3),9(10),16(17),23(24)-tetrakis-(4-aminophenoxy) phthalocyaninato indium (III) chloride (2) and its carbon nanotube composite in dimethylsulfoxide (DMSO) and dimethylformamide (DMF) solutions is described. The nonlinear third-order susceptibility and second-order hyperpolarizability values are also reported. A large nonlinear absorption that increased on covalent linking with single-walled carbon nanotubes (SWCNTs) was observed for the compound in DMSO. The nanosecond nonlinear absorption and the optical limiting behavior of this complex are shown to be dominated by a strong excited state absorption from a two-photon pumped state. The optical limiter using the new nanocomposite material (SWCNT-2) in the appropriate solvent showed a much lower threshold for optical limiting together with a much lower transmission at high fluences than previously reported nanocomposite limiters. The optical properties of the phthalocyanine and its conjugate were found to show high sensitivity toward the change of solvent matrix.
- Full Text:
- Date Issued: 2014
Optical nonlinearities in non-peripherally substituted pyridyloxy phthalocyanines
- Sanusi, Kayode, Antunes, Edith M, Nyokong, Tebello
- Authors: Sanusi, Kayode , Antunes, Edith M , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241618 , vital:50955 , xlink:href="https://doi.org/10.1039/C3DT52462K"
- Description: The optical nonlinearities of six non-peripherally-substituted pyridyloxy phthalocyanines have been studied at 532 nm using a nanosecond Z-scan technique in a dimethyl sulphoxide solution. Ring-strain effects and the absence of a metal center were found to greatly reduce the inherent high nonlinearities expected of some of these phthalocyanine complexes. Of the six molecules investigated, 1(4),8(11),15(18),22(25)-tetrakis-(2-pyridyloxy)phthalocyaninato lead(II) 3, 1(4),8(11),15(18),22(25)-tetrakis-(2-pyridyloxy)phthalocyanine 5, and 1(4),8(11),15(18),22(25)-tetrakis-(4-pyridyloxy)phthalocyanine 6 were found to exhibit negligible nonlinear optical behavior, due to either the absence of asymmetry or central metal and/or the presence of a ring-strain effect. A two-photon absorption process was found to be the major contributor to the observed reverse saturable absorption (RSA) in 1(4),8(11),15(18),22(25)-tetrakis-(4-pyridyloxy)phthalocyaninato lead(II) 4, 1(4)-mono-(2-pyridyloxy)phthalocyaninato lead(II) 7, and 1(4)-mono-(4-pyridyloxy)phthalocyaninato lead(II) 8, with large two-photon absorption cross-section, high hyperpolarizability and high third-order susceptibility values in the range of 4.53 × 10−43–5.33 × 10−42 cm4 s per photon, 1.61 × 10−28–1.89 × 10−27 esu and 9.73 × 10−12–7.05 × 10−11 esu respectively.
- Full Text:
- Date Issued: 2014
- Authors: Sanusi, Kayode , Antunes, Edith M , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241618 , vital:50955 , xlink:href="https://doi.org/10.1039/C3DT52462K"
- Description: The optical nonlinearities of six non-peripherally-substituted pyridyloxy phthalocyanines have been studied at 532 nm using a nanosecond Z-scan technique in a dimethyl sulphoxide solution. Ring-strain effects and the absence of a metal center were found to greatly reduce the inherent high nonlinearities expected of some of these phthalocyanine complexes. Of the six molecules investigated, 1(4),8(11),15(18),22(25)-tetrakis-(2-pyridyloxy)phthalocyaninato lead(II) 3, 1(4),8(11),15(18),22(25)-tetrakis-(2-pyridyloxy)phthalocyanine 5, and 1(4),8(11),15(18),22(25)-tetrakis-(4-pyridyloxy)phthalocyanine 6 were found to exhibit negligible nonlinear optical behavior, due to either the absence of asymmetry or central metal and/or the presence of a ring-strain effect. A two-photon absorption process was found to be the major contributor to the observed reverse saturable absorption (RSA) in 1(4),8(11),15(18),22(25)-tetrakis-(4-pyridyloxy)phthalocyaninato lead(II) 4, 1(4)-mono-(2-pyridyloxy)phthalocyaninato lead(II) 7, and 1(4)-mono-(4-pyridyloxy)phthalocyaninato lead(II) 8, with large two-photon absorption cross-section, high hyperpolarizability and high third-order susceptibility values in the range of 4.53 × 10−43–5.33 × 10−42 cm4 s per photon, 1.61 × 10−28–1.89 × 10−27 esu and 9.73 × 10−12–7.05 × 10−11 esu respectively.
- Full Text:
- Date Issued: 2014
Enhanced optical limiting performance in phthalocyanine-quantum dot nanocomposites by free-carrier absorption mechanism
- Sanusi, Kayode, Khene, Samson M, Nyokong, Tebello
- Authors: Sanusi, Kayode , Khene, Samson M , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/193904 , vital:45404 , xlink:href="https://doi.org/10.1016/j.optmat.2014.07.024"
- Description: Enhanced nonlinear optical properties (in dimethyl sulphoxide) is observed for 2(3),9(10),16(17),23(24)-tetrakis-(4-aminophenoxy)phthalocyaninato indium(III) chloride (InPc) when covalently linked to CdSe/ZnS or CdSe quantum dots (QDs). The experimental nonlinear optical parameters were obtained from Z-Scan measurements. Contributions from two-photon absorption (2PA) due to the InPc, and free-carrier absorption (FCA) by QDS have been identified as the main factors responsible for the enhanced optical limiting. The effective nonlinear absorption coefficient for InPc-CdSe/ZnS was found to be 700.0 cm/GW. The FCA cross-sections for InPc-CdSe/ZnS and InPc-CdSe composites were found to be 1.52 × 10−19 and 6.00 × 10−20 cm2 respectively. A much lower limiting threshold of 92 mJ cm−2 was observed for InPc-CdSe/ZnS nanocomposite, hence, making it suitable for use as optical limiting material. Density Functional Theory (DFT) calculations on similar phthalocyanine-quantum dots system was modeled in order to explain the enhancement in the observed nonlinear optical properties of the Pc in the presence of the QDs. The experimentally determined nonlinear optical properties are well within the range of the DFT calculated properties.
- Full Text:
- Date Issued: 2014
- Authors: Sanusi, Kayode , Khene, Samson M , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/193904 , vital:45404 , xlink:href="https://doi.org/10.1016/j.optmat.2014.07.024"
- Description: Enhanced nonlinear optical properties (in dimethyl sulphoxide) is observed for 2(3),9(10),16(17),23(24)-tetrakis-(4-aminophenoxy)phthalocyaninato indium(III) chloride (InPc) when covalently linked to CdSe/ZnS or CdSe quantum dots (QDs). The experimental nonlinear optical parameters were obtained from Z-Scan measurements. Contributions from two-photon absorption (2PA) due to the InPc, and free-carrier absorption (FCA) by QDS have been identified as the main factors responsible for the enhanced optical limiting. The effective nonlinear absorption coefficient for InPc-CdSe/ZnS was found to be 700.0 cm/GW. The FCA cross-sections for InPc-CdSe/ZnS and InPc-CdSe composites were found to be 1.52 × 10−19 and 6.00 × 10−20 cm2 respectively. A much lower limiting threshold of 92 mJ cm−2 was observed for InPc-CdSe/ZnS nanocomposite, hence, making it suitable for use as optical limiting material. Density Functional Theory (DFT) calculations on similar phthalocyanine-quantum dots system was modeled in order to explain the enhancement in the observed nonlinear optical properties of the Pc in the presence of the QDs. The experimentally determined nonlinear optical properties are well within the range of the DFT calculated properties.
- Full Text:
- Date Issued: 2014
Exploring a knowledge-focused trajectory for researching environmental learning in the South African curriculum
- Authors: Schudel, Ingrid J
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/294375 , vital:57216 , xlink:href="https://www.researchgate.net/publication/305730521"
- Description: This paper explores the past twenty years of environmental learning in the South African curriculum in order to consider how one might best research a knowledge focus within the Fundisa for Change national teacher education programme. In exploring this knowledge focus, the paper draws on international literature. It also extensively, but not exclusively, draws on two key publications which informed the 2002 and the 2011 curriculum changes in South Africa. The paper draws on social realist curriculum theory, underpinned by critical realism. This theoretical perspective, which includes Bernstein’s pedagogic device and particularly recontextualisation of knowledge across the pedagogical landscape, provides a language of description for critically reviewing knowledge and environmental learning. In particular, the review develops five perspectives on environmental knowledge as it pertains to curriculum which include: Perspective #1) new environmental knowledge in the curriculum; Perspective #2) environmental knowledge in local and global contexts; Perspective # 3) dynamic knowledge for open-ended and futuristic thinking; Perspective #4) depth and complexity of environmental knowledge; and Perspective #5) combining discipline-specific core knowledge and skills with a systems perspective. The paper argues for a re-emphasis and review of new environmental knowledge and learning support materials. It suggests a consideration of context-rich but not context-bound explorations of local and global environmental issues and the need for adopting open-ended and futuristic thinking in the context of the dynamism of environmental knowledge. This involves exploring systems of meaning and structures of knowledge in dealing with the complexity of environmental knowledge and acknowledging the challenges of a transformative ideology within such a complex knowledge system. Additionally, the paper argues for creative ways of working across disciplines to develop better understanding of discipline-specific concepts and their potential to contribute to meaningful learning. The paper concludes by suggesting a research trajectory for future environmental education research in the context of the new South African Curriculum and Assessment Policy Statement (CAPS) extending the emphasis in this paper on the official recontextualising field, to fields across the entire pedagogic device.
- Full Text:
- Date Issued: 2014
- Authors: Schudel, Ingrid J
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/294375 , vital:57216 , xlink:href="https://www.researchgate.net/publication/305730521"
- Description: This paper explores the past twenty years of environmental learning in the South African curriculum in order to consider how one might best research a knowledge focus within the Fundisa for Change national teacher education programme. In exploring this knowledge focus, the paper draws on international literature. It also extensively, but not exclusively, draws on two key publications which informed the 2002 and the 2011 curriculum changes in South Africa. The paper draws on social realist curriculum theory, underpinned by critical realism. This theoretical perspective, which includes Bernstein’s pedagogic device and particularly recontextualisation of knowledge across the pedagogical landscape, provides a language of description for critically reviewing knowledge and environmental learning. In particular, the review develops five perspectives on environmental knowledge as it pertains to curriculum which include: Perspective #1) new environmental knowledge in the curriculum; Perspective #2) environmental knowledge in local and global contexts; Perspective # 3) dynamic knowledge for open-ended and futuristic thinking; Perspective #4) depth and complexity of environmental knowledge; and Perspective #5) combining discipline-specific core knowledge and skills with a systems perspective. The paper argues for a re-emphasis and review of new environmental knowledge and learning support materials. It suggests a consideration of context-rich but not context-bound explorations of local and global environmental issues and the need for adopting open-ended and futuristic thinking in the context of the dynamism of environmental knowledge. This involves exploring systems of meaning and structures of knowledge in dealing with the complexity of environmental knowledge and acknowledging the challenges of a transformative ideology within such a complex knowledge system. Additionally, the paper argues for creative ways of working across disciplines to develop better understanding of discipline-specific concepts and their potential to contribute to meaningful learning. The paper concludes by suggesting a research trajectory for future environmental education research in the context of the new South African Curriculum and Assessment Policy Statement (CAPS) extending the emphasis in this paper on the official recontextualising field, to fields across the entire pedagogic device.
- Full Text:
- Date Issued: 2014
Synthesis of ytterbium bisphthalocyanines
- Sekhosana, Kutloana E, Nyokong, Tebello
- Authors: Sekhosana, Kutloana E , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189887 , vital:44943 , xlink:href="https://doi.org/10.1016/j.optmat.2014.05.013"
- Description: Herein we report on the syntheses, photophysico-chemical properties and nonlinear absorption parameters of bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-2-yloxy phthalocyaninato)} ytterbium (III) (3) and bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-4-yloxy phthalocyaninato)} ytterbium (III) (4). The fluorescence and singlet oxygen quantum yields obtained for complexes 3 and 4 are low. The triplet quantum yield obtained for complex 3 is high at ΦT = 0.89 whereas for complex 4 ΦT = 0.48. The third order optical susceptibility values are of the order: 10−11 esu (for complex 3), and 10−13 esu (for complex 4) while the hyperpolarizability values are of the order: 10−28 esu (for complex 3) and 10−31 esu (for complex 4). Complexes 3 and 4 show two-photon absorption coefficients of the order of 10−46 cm4 s/photon and 10−48 cm4 s/photon, and threshold intensities as low as 0.3 J cm−2 and 0.0045 J cm−2, respectively.
- Full Text:
- Date Issued: 2014
- Authors: Sekhosana, Kutloana E , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/189887 , vital:44943 , xlink:href="https://doi.org/10.1016/j.optmat.2014.05.013"
- Description: Herein we report on the syntheses, photophysico-chemical properties and nonlinear absorption parameters of bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-2-yloxy phthalocyaninato)} ytterbium (III) (3) and bis-{1(4), 8(11), 15(18), 22(25)-(tetrapyridin-4-yloxy phthalocyaninato)} ytterbium (III) (4). The fluorescence and singlet oxygen quantum yields obtained for complexes 3 and 4 are low. The triplet quantum yield obtained for complex 3 is high at ΦT = 0.89 whereas for complex 4 ΦT = 0.48. The third order optical susceptibility values are of the order: 10−11 esu (for complex 3), and 10−13 esu (for complex 4) while the hyperpolarizability values are of the order: 10−28 esu (for complex 3) and 10−31 esu (for complex 4). Complexes 3 and 4 show two-photon absorption coefficients of the order of 10−46 cm4 s/photon and 10−48 cm4 s/photon, and threshold intensities as low as 0.3 J cm−2 and 0.0045 J cm−2, respectively.
- Full Text:
- Date Issued: 2014
Optical nonlinearities and photophysicochemical behaviour of green and blue forms of lutetium bisphthalocyanines
- Sekhosana, Kutloana Edith, Amuhaya, Edith, Mack, John, Nyokong, Tebello
- Authors: Sekhosana, Kutloana Edith , Amuhaya, Edith , Mack, John , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241606 , vital:50954 , xlink:href="https://doi.org/10.1039/C4TC00505H"
- Description: A rare earth sandwich-type phthalocyanine: bis-{2,3,9,10,16,17,23,24-octa(4-tert-butylphenoxy) phthalocyaninato} lutetium(III) has been synthesized. The photophysical and nonlinear optical behavior of both the “green” and “blue” forms ([LuIIIPc2] and [LuIIIPc2]−, respectively) of the complex have been investigated. High triplet state and singlet oxygen quantum yield values were obtained for the neutral blue form which contains no unpaired electrons. Relatively high third order susceptibility and hyperpolarizability values of the order of 10−10 and 10−28 esu were obtained for both the green and blue forms, respectively. A very low threshold intensity of 0.00051 J cm−2 was obtained for the blue form. Hence the complex shows promise for non-linear optical applications.
- Full Text:
- Date Issued: 2014
- Authors: Sekhosana, Kutloana Edith , Amuhaya, Edith , Mack, John , Nyokong, Tebello
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241606 , vital:50954 , xlink:href="https://doi.org/10.1039/C4TC00505H"
- Description: A rare earth sandwich-type phthalocyanine: bis-{2,3,9,10,16,17,23,24-octa(4-tert-butylphenoxy) phthalocyaninato} lutetium(III) has been synthesized. The photophysical and nonlinear optical behavior of both the “green” and “blue” forms ([LuIIIPc2] and [LuIIIPc2]−, respectively) of the complex have been investigated. High triplet state and singlet oxygen quantum yield values were obtained for the neutral blue form which contains no unpaired electrons. Relatively high third order susceptibility and hyperpolarizability values of the order of 10−10 and 10−28 esu were obtained for both the green and blue forms, respectively. A very low threshold intensity of 0.00051 J cm−2 was obtained for the blue form. Hence the complex shows promise for non-linear optical applications.
- Full Text:
- Date Issued: 2014
Positioning non-timber forest products on the development agenda
- Shackleton, Charlie M, Pandey, Ashok K
- Authors: Shackleton, Charlie M , Pandey, Ashok K
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180992 , vital:43679 , xlink:href="https://doi.org/10.1016/j.forpol.2013.07.004"
- Description: Non-timber forests products (NTFPs) provide multiple livelihood benefits to local communities and regional and national economies. And yet this knowledge is rarely drawn upon in debates around and design of poverty alleviation or land use policies, strategies and projects. Unless the accumulating wealth of empirical evidence can be translated into policies and approaches at higher levels, and integrated into poverty alleviation programmes, it will have little impact on local and national poverty profiles. In this paper we propose and briefly discuss eight steps to facilitate integration of NTFPs into the development agenda, for the benefit of local communities. These include: (1) proper inventory of NTFP stocks, (2) research on NTFP ecology and sustainable harvest levels, (3) introduction of extension services for NTFPs, (4) inclusion of NTFPs in land management and trade-off decisions, (5) integration of NTFPs into sectoral policies, (6) ensuring NTFP commercialisation is not at the expense of local livelihood needs, (7) promoting security of access and use, and (8) examination of local contextual drivers of unsustainable use. Each is presented along with examples or proposals towards implementation.
- Full Text:
- Date Issued: 2014
- Authors: Shackleton, Charlie M , Pandey, Ashok K
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180992 , vital:43679 , xlink:href="https://doi.org/10.1016/j.forpol.2013.07.004"
- Description: Non-timber forests products (NTFPs) provide multiple livelihood benefits to local communities and regional and national economies. And yet this knowledge is rarely drawn upon in debates around and design of poverty alleviation or land use policies, strategies and projects. Unless the accumulating wealth of empirical evidence can be translated into policies and approaches at higher levels, and integrated into poverty alleviation programmes, it will have little impact on local and national poverty profiles. In this paper we propose and briefly discuss eight steps to facilitate integration of NTFPs into the development agenda, for the benefit of local communities. These include: (1) proper inventory of NTFP stocks, (2) research on NTFP ecology and sustainable harvest levels, (3) introduction of extension services for NTFPs, (4) inclusion of NTFPs in land management and trade-off decisions, (5) integration of NTFPs into sectoral policies, (6) ensuring NTFP commercialisation is not at the expense of local livelihood needs, (7) promoting security of access and use, and (8) examination of local contextual drivers of unsustainable use. Each is presented along with examples or proposals towards implementation.
- Full Text:
- Date Issued: 2014
Low-cost housing developments in South Africa miss the opportunities for household level urban greening
- Shackleton, Charlie M, Hebinck, Paul, Kaoma, Humphrey, Chishaleshale, Mwale, Chinyimba, Abby, Shackleton, Sheona E, Gambiza, James, Gumbo, Davison
- Authors: Shackleton, Charlie M , Hebinck, Paul , Kaoma, Humphrey , Chishaleshale, Mwale , Chinyimba, Abby , Shackleton, Sheona E , Gambiza, James , Gumbo, Davison
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180967 , vital:43677 , xlink:href="https://doi.org/10.1016/j.landusepol.2013.10.002"
- Description: Most developing countries of the world are experiencing large-scale migration from rural to urban areas. Many new migrants end up in low-cost or informal areas and slums with attendant environmental concerns. One dimension of improved urban sustainability is the provision of green spaces and trees. Whilst many countries have urban greening programmes for public spaces and streets, few have considered the status and potential contribution of trees from resident's own gardens. This paper reports firstly on the policy environment for urban forestry and greening in South Africa and secondly on the maintenance, use and appreciation of trees on private homesteads of residents of new and older low-income suburbs as well as informal housing areas from three small towns in South Africa. In particular we examine if the most recent centrally planned and built low-income housing schemes (called RDP suburbs in South Africa) have considered and incorporated plans or spaces for urban greenery in peoples’ homesteads. We found that broad environmental and sustainability concerns and statements are common in urban development and housing policies, but specific guidelines for implementation are generally absent. More specifically, urban forestry and tree planting are rarely mentioned in the broader land use and environmental policies other than the national forest act and subsequent regulations, but even there it is relatively superficial. In the study towns the prevalence, density and number of species of trees was lowest in the new RDP suburbs relative to the township and informal areas. Consequently, the contribution of tree products to local livelihoods was also lower in the RDP areas. Yet there were no differences in the level of appreciation of the value and intangible benefits of trees between residents from the three different suburbs. This shows that the failure to plan for and accommodate trees in new low-cost housing developments is missing an opportunity to improve overall urban sustainability and liveability and constraining the potential flows of tangible and intangible benefits to urban residents. Making opportunities for such in older suburbs is challenging because of space limitations and cost implications of retrospective provisions, but incorporation into plans for new low-cost housing development should be possible.
- Full Text:
- Date Issued: 2014
- Authors: Shackleton, Charlie M , Hebinck, Paul , Kaoma, Humphrey , Chishaleshale, Mwale , Chinyimba, Abby , Shackleton, Sheona E , Gambiza, James , Gumbo, Davison
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/180967 , vital:43677 , xlink:href="https://doi.org/10.1016/j.landusepol.2013.10.002"
- Description: Most developing countries of the world are experiencing large-scale migration from rural to urban areas. Many new migrants end up in low-cost or informal areas and slums with attendant environmental concerns. One dimension of improved urban sustainability is the provision of green spaces and trees. Whilst many countries have urban greening programmes for public spaces and streets, few have considered the status and potential contribution of trees from resident's own gardens. This paper reports firstly on the policy environment for urban forestry and greening in South Africa and secondly on the maintenance, use and appreciation of trees on private homesteads of residents of new and older low-income suburbs as well as informal housing areas from three small towns in South Africa. In particular we examine if the most recent centrally planned and built low-income housing schemes (called RDP suburbs in South Africa) have considered and incorporated plans or spaces for urban greenery in peoples’ homesteads. We found that broad environmental and sustainability concerns and statements are common in urban development and housing policies, but specific guidelines for implementation are generally absent. More specifically, urban forestry and tree planting are rarely mentioned in the broader land use and environmental policies other than the national forest act and subsequent regulations, but even there it is relatively superficial. In the study towns the prevalence, density and number of species of trees was lowest in the new RDP suburbs relative to the township and informal areas. Consequently, the contribution of tree products to local livelihoods was also lower in the RDP areas. Yet there were no differences in the level of appreciation of the value and intangible benefits of trees between residents from the three different suburbs. This shows that the failure to plan for and accommodate trees in new low-cost housing developments is missing an opportunity to improve overall urban sustainability and liveability and constraining the potential flows of tangible and intangible benefits to urban residents. Making opportunities for such in older suburbs is challenging because of space limitations and cost implications of retrospective provisions, but incorporation into plans for new low-cost housing development should be possible.
- Full Text:
- Date Issued: 2014
Synthesis, characterization and photodynamic therapy properties of an octa-4-tert-butylphenoxy-substituted phosphorus (V) triazatetrabenzcorrole
- Shi, Maohu, Tian, Jiangwei, Mkhize, Colin, Kubheka, Gugu, Zhou, Jinfeng, Mack, John, Nyokong, Tebello, Shen, Zhen
- Authors: Shi, Maohu , Tian, Jiangwei , Mkhize, Colin , Kubheka, Gugu , Zhou, Jinfeng , Mack, John , Nyokong, Tebello , Shen, Zhen
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241494 , vital:50944 , xlink:href="https://doi.org/10.1142/S1088424614500436"
- Description: A novel octa-4-tert-butylphenoxy-substituted phosphorus(V) triazatetrabenzcorrole (PVTBC), has been synthesized and characterized by MALDI-TOF MS and NMR, FT-IR and MCD spectroscopy. The fluorescence emission spectrum was used to determine the fluorescence quantum yield and the quantum yield for singlet oxygen generation was calculated by using 1,3-diphenylisobenzofuran as a scavenger. The photocytoxicity against U87MG cells was measured. The results indicated that PVTBC is potentially useful as an NIR region photosensitizer for photodynamic therapy (PDT).
- Full Text:
- Date Issued: 2014
- Authors: Shi, Maohu , Tian, Jiangwei , Mkhize, Colin , Kubheka, Gugu , Zhou, Jinfeng , Mack, John , Nyokong, Tebello , Shen, Zhen
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/241494 , vital:50944 , xlink:href="https://doi.org/10.1142/S1088424614500436"
- Description: A novel octa-4-tert-butylphenoxy-substituted phosphorus(V) triazatetrabenzcorrole (PVTBC), has been synthesized and characterized by MALDI-TOF MS and NMR, FT-IR and MCD spectroscopy. The fluorescence emission spectrum was used to determine the fluorescence quantum yield and the quantum yield for singlet oxygen generation was calculated by using 1,3-diphenylisobenzofuran as a scavenger. The photocytoxicity against U87MG cells was measured. The results indicated that PVTBC is potentially useful as an NIR region photosensitizer for photodynamic therapy (PDT).
- Full Text:
- Date Issued: 2014
Impact of marine inundation after a period of drought on the lakeshore vegetation of Lake St Lucia, South Africa: resilience of estuarine vegetation
- Sieben, E J J, Ellery, William F N, Dullo, B W, Grootjans, A P
- Authors: Sieben, E J J , Ellery, William F N , Dullo, B W , Grootjans, A P
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144443 , vital:38346 , DOI: 10.2989/16085914.2015.1032208
- Description: The shore of Lake St Lucia in the vicinity of Catalina Bay, in the southern part of the lake, receives freshwater input as surface and groundwater seepage from the adjacent elevated coastal plain. Vegetation, water quality and landform were recorded on the lakeshore and on the dry lakebed near one of these seepage zones. This was done along a gradient perpendicular to the lakeshore and along the lakeshore away from the fluvial source of freshwater input. A number of plant communities were found along a gradient of water salinity from the shoreline (fresh water) towards the centre of the lake, and also away from the fluvial input of water (increasingly saline). Species richness decreased with increasing salinity. The first study was conducted in 2006 after a prolonged drought associated with low lake levels and closure of the mouth, and repeated again in 2010 three years after breaching of the estuarine mouth by a tropical cyclone at sea, which caused inundation of the partly dry lakebed with sea water. The vegetation of the lakeshore after these major disturbances was remarkably similar in the two time periods, suggesting rapid recovery near freshwater seepage zones, following an influx of sea water.
- Full Text:
- Date Issued: 2015
- Authors: Sieben, E J J , Ellery, William F N , Dullo, B W , Grootjans, A P
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/144443 , vital:38346 , DOI: 10.2989/16085914.2015.1032208
- Description: The shore of Lake St Lucia in the vicinity of Catalina Bay, in the southern part of the lake, receives freshwater input as surface and groundwater seepage from the adjacent elevated coastal plain. Vegetation, water quality and landform were recorded on the lakeshore and on the dry lakebed near one of these seepage zones. This was done along a gradient perpendicular to the lakeshore and along the lakeshore away from the fluvial source of freshwater input. A number of plant communities were found along a gradient of water salinity from the shoreline (fresh water) towards the centre of the lake, and also away from the fluvial input of water (increasingly saline). Species richness decreased with increasing salinity. The first study was conducted in 2006 after a prolonged drought associated with low lake levels and closure of the mouth, and repeated again in 2010 three years after breaching of the estuarine mouth by a tropical cyclone at sea, which caused inundation of the partly dry lakebed with sea water. The vegetation of the lakeshore after these major disturbances was remarkably similar in the two time periods, suggesting rapid recovery near freshwater seepage zones, following an influx of sea water.
- Full Text:
- Date Issued: 2015
Cosmological efficacy and the politics of Sacred Place: Soli Rainmaking in contemporary Zambia
- Authors: Simbao, Ruth K
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147482 , vital:38642 , https://doi.org/10.1162/AFAR_a_00163
- Description: In this article I analyze cosmological efficacy in light of the politicization and apparent secularization of contemporary annual ceremonies in Zambia, south-central Africa, which are framed by scholars as neotraditional (Lentz 2001), folklorized (van Binsbergen 1994), or retraditionalized (Gould 2005:3, 6) events. My term “festivalization” registers the formalization of Zambian performances such as rituals, harvest festivals, inaugurations, and initiations as annual festival events, but does not imply a pejorative attitude towards cultural change and so-called inauthenticity, as the words “folklorization” or “retraditionalization” seem to do.
- Full Text:
- Date Issued: 2014
- Authors: Simbao, Ruth K
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147482 , vital:38642 , https://doi.org/10.1162/AFAR_a_00163
- Description: In this article I analyze cosmological efficacy in light of the politicization and apparent secularization of contemporary annual ceremonies in Zambia, south-central Africa, which are framed by scholars as neotraditional (Lentz 2001), folklorized (van Binsbergen 1994), or retraditionalized (Gould 2005:3, 6) events. My term “festivalization” registers the formalization of Zambian performances such as rituals, harvest festivals, inaugurations, and initiations as annual festival events, but does not imply a pejorative attitude towards cultural change and so-called inauthenticity, as the words “folklorization” or “retraditionalization” seem to do.
- Full Text:
- Date Issued: 2014
Rise and fall of apartheid: photography and the bureaucracy of everyday life
- Authors: Simbao, Ruth K
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147604 , vital:38653 , DOI: 10.1080/02533952.2014.998052
- Description: The exhibition catalogue Rise and Fall of Apartheid is a valuable collection of photographic images that create, according to Enwezor, “a critical visualization and interrogation of […] [apartheid’s] normative symbols, signs and representation” (18). The catalogue focuses on African subjects as “agents of their own emancipation” (18), and contextualises South Africa’s anticipation of the end of apartheid within broader global changes in the late 1980s. Essays by Okwui Enwezor, Michael Godby, Achille Mbembe, Darren Newbury, Colin Richards, Patricia Hayes, Andries Walter Olifant, Rory Bester and Khwezi Gule are included in the catalogue, and are interspersed between photographic images that are grouped in chronological clusters: 1948–1959; 1960–1969; 1970–1979; 1980–1989; and 1990–1995.
- Full Text:
- Date Issued: 2014
- Authors: Simbao, Ruth K
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/147604 , vital:38653 , DOI: 10.1080/02533952.2014.998052
- Description: The exhibition catalogue Rise and Fall of Apartheid is a valuable collection of photographic images that create, according to Enwezor, “a critical visualization and interrogation of […] [apartheid’s] normative symbols, signs and representation” (18). The catalogue focuses on African subjects as “agents of their own emancipation” (18), and contextualises South Africa’s anticipation of the end of apartheid within broader global changes in the late 1980s. Essays by Okwui Enwezor, Michael Godby, Achille Mbembe, Darren Newbury, Colin Richards, Patricia Hayes, Andries Walter Olifant, Rory Bester and Khwezi Gule are included in the catalogue, and are interspersed between photographic images that are grouped in chronological clusters: 1948–1959; 1960–1969; 1970–1979; 1980–1989; and 1990–1995.
- Full Text:
- Date Issued: 2014
Rise and fall of apartheid: photography and the bureaucracy of everyday life
- Authors: Simbao, Ruth Kerkham, 1969-
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125910 , vital:35831 , https://doi.10.1080/02533952.2014.998052
- Description: The exhibition catalogue Rise and Fall of Apartheid is a valuable collection of photographic images that create, according to Enwezor, “a critical visualization and interrogation of […] [apartheid’s] normative symbols, signs and representation” (18). The catalogue focuses on African subjects as “agents of their own emancipation” (18), and contextualises South Africa’s anticipation of the end of apartheid within broader global changes in the late 1980s. Essays by Okwui Enwezor, Michael Godby, Achille Mbembe, Darren Newbury, Colin Richards, Patricia Hayes, Andries Walter Olifant, Rory Bester and Khwezi Gule are included in the catalogue, and are interspersed between photographic images that are grouped in chronological clusters: 1948–1959; 1960–1969; 1970–1979; 1980–1989; and 1990–1995.
- Full Text:
- Date Issued: 2015
- Authors: Simbao, Ruth Kerkham, 1969-
- Date: 2015
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125910 , vital:35831 , https://doi.10.1080/02533952.2014.998052
- Description: The exhibition catalogue Rise and Fall of Apartheid is a valuable collection of photographic images that create, according to Enwezor, “a critical visualization and interrogation of […] [apartheid’s] normative symbols, signs and representation” (18). The catalogue focuses on African subjects as “agents of their own emancipation” (18), and contextualises South Africa’s anticipation of the end of apartheid within broader global changes in the late 1980s. Essays by Okwui Enwezor, Michael Godby, Achille Mbembe, Darren Newbury, Colin Richards, Patricia Hayes, Andries Walter Olifant, Rory Bester and Khwezi Gule are included in the catalogue, and are interspersed between photographic images that are grouped in chronological clusters: 1948–1959; 1960–1969; 1970–1979; 1980–1989; and 1990–1995.
- Full Text:
- Date Issued: 2015
Re-thinking engagement: Dialogic strategies of alignment in letters to two South African newspapers
- Smith, Jade, Adendorff, Ralph
- Authors: Smith, Jade , Adendorff, Ralph
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125876 , vital:35828 , https://doi.org/10.1080/10228195.2014.909872
- Description: This article uses an appraisal analysis of 40 letters to the Daily Sun and The Times newspapers in South Africa to illustrate a reconceptualisation of the Engagement system. It discusses dialogism (Bakhtin 1981), which inspired the creation of the Engagement framework by White (2003), who classified attempts to either align or disalign readers with a writer’s stance. Contrary to the options for dialogic Engagement proposed by Martin and White (2005) and White and Don (2012), the data suggests that not all Engagement strategies carry equal power of alignment, as the framework’s systemic layout implies. This prompts a re-thinking of the Engagement categories as occurring along a continuum of their strength.
- Full Text:
- Date Issued: 2014
- Authors: Smith, Jade , Adendorff, Ralph
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125876 , vital:35828 , https://doi.org/10.1080/10228195.2014.909872
- Description: This article uses an appraisal analysis of 40 letters to the Daily Sun and The Times newspapers in South Africa to illustrate a reconceptualisation of the Engagement system. It discusses dialogism (Bakhtin 1981), which inspired the creation of the Engagement framework by White (2003), who classified attempts to either align or disalign readers with a writer’s stance. Contrary to the options for dialogic Engagement proposed by Martin and White (2005) and White and Don (2012), the data suggests that not all Engagement strategies carry equal power of alignment, as the framework’s systemic layout implies. This prompts a re-thinking of the Engagement categories as occurring along a continuum of their strength.
- Full Text:
- Date Issued: 2014
'On the fringes of society’ and ‘out of the closest’: a response to ‘Sexual/Textual Politics
- Authors: Spencer, Lynda G
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/139034 , vital:37698 , https://doi.org/10.1080/02589001.2014.983324
- Description: Gibson Ncube’s ‘Sexual/Textual Politics: Rethinking gender and sexuality in gay Moroccan literature’ focuses on an emerging body of gay literature that is developing within the larger framework of Moroccan literature. Ncube attempts to illustrate how the contemporary narratives of Rachid O. and Abdellah Taïa portray the quotidian experiences of minority sexualities who strive to exist in the hegemonic heteropatriarchies of Moroccan societies. These narratives challenge and destabilise the heteronormative ideals of Arab-Muslim communities and endeavour to offer alternative ways of thinking about marginalised sexualities in the public space. This analysis draws on the feminist underpinnings of Maria Pia Lara to argue that private gay narratives have the potential to re-imagine the public domain.
- Full Text:
- Date Issued: 2014
- Authors: Spencer, Lynda G
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/139034 , vital:37698 , https://doi.org/10.1080/02589001.2014.983324
- Description: Gibson Ncube’s ‘Sexual/Textual Politics: Rethinking gender and sexuality in gay Moroccan literature’ focuses on an emerging body of gay literature that is developing within the larger framework of Moroccan literature. Ncube attempts to illustrate how the contemporary narratives of Rachid O. and Abdellah Taïa portray the quotidian experiences of minority sexualities who strive to exist in the hegemonic heteropatriarchies of Moroccan societies. These narratives challenge and destabilise the heteronormative ideals of Arab-Muslim communities and endeavour to offer alternative ways of thinking about marginalised sexualities in the public space. This analysis draws on the feminist underpinnings of Maria Pia Lara to argue that private gay narratives have the potential to re-imagine the public domain.
- Full Text:
- Date Issued: 2014
Occurrence of larval fishes in a rocky shore-associated nursery area in temperate South Africa, with emphasis on temperature-related growth in dominant Sparidae
- Strydom, Nadine A, Booth, Anthony J, McLachlan, A
- Authors: Strydom, Nadine A , Booth, Anthony J , McLachlan, A
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125342 , vital:35774 , https://doi.10.2989/1814232X.2014.899269
- Description: Larval fishes were studied in Shark Bay on the warm, temperate south-east coast of South Africa. The bay is a small, shallow, subtidal area associated with a rocky shore. Sampling took place fortnightly for a period of one year (September 2004–August 2005) to assess composition, abundance and growth of fishes. The objectives of the study were to assess the extent of use of this habitat type by larvae throughout the year and to ascertain what temperature advantages this relatively warm habitat could have on growth of dominant species. A total of 10 fish families, represented by 16 taxa, was collected using a specially modified beach seine net (mesh aperture 500 μm). Shark Bay was utilised extensively by Diplodus capensis and Sarpa salpa and to a lesser extent by Clinus supercilious, Liza spp. and Mugil cephalus. Mean catch per unit effort (CPUE) of larvae was high (>500 larvae per net haul), peaking at ~7 500 larvae in a single haul that consisted mostly of postflexion-stage Sparidae. There was a weak, negative correlation (−0.24) between temperature and overall CPUE, which reflected either the seasonality or protracted nature of spawning by the species occurring in the bay. There was no significant difference in CPUE between the moon phases sampled on the spring tides in this study. Shark Bay was dominated by postflexionstage larvae, consisting in particular of species common to tide pools during the juvenile stage. Certain species were sampled for only short periods during the year. The year-round occurrence and high abundance of the two dominant species indicate that Shark Bay represents an important nursery habitat for the completion of the larval phase. These species exhibited exponential growth that lagged behind small increases in temperature, highlighting the importance of access to shallow, warm habitat that allows larval growth to increase, leading to earlier settlement into juvenile habitat and thereby reducing the pelagic larval duration.
- Full Text:
- Date Issued: 2014
- Authors: Strydom, Nadine A , Booth, Anthony J , McLachlan, A
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/125342 , vital:35774 , https://doi.10.2989/1814232X.2014.899269
- Description: Larval fishes were studied in Shark Bay on the warm, temperate south-east coast of South Africa. The bay is a small, shallow, subtidal area associated with a rocky shore. Sampling took place fortnightly for a period of one year (September 2004–August 2005) to assess composition, abundance and growth of fishes. The objectives of the study were to assess the extent of use of this habitat type by larvae throughout the year and to ascertain what temperature advantages this relatively warm habitat could have on growth of dominant species. A total of 10 fish families, represented by 16 taxa, was collected using a specially modified beach seine net (mesh aperture 500 μm). Shark Bay was utilised extensively by Diplodus capensis and Sarpa salpa and to a lesser extent by Clinus supercilious, Liza spp. and Mugil cephalus. Mean catch per unit effort (CPUE) of larvae was high (>500 larvae per net haul), peaking at ~7 500 larvae in a single haul that consisted mostly of postflexion-stage Sparidae. There was a weak, negative correlation (−0.24) between temperature and overall CPUE, which reflected either the seasonality or protracted nature of spawning by the species occurring in the bay. There was no significant difference in CPUE between the moon phases sampled on the spring tides in this study. Shark Bay was dominated by postflexionstage larvae, consisting in particular of species common to tide pools during the juvenile stage. Certain species were sampled for only short periods during the year. The year-round occurrence and high abundance of the two dominant species indicate that Shark Bay represents an important nursery habitat for the completion of the larval phase. These species exhibited exponential growth that lagged behind small increases in temperature, highlighting the importance of access to shallow, warm habitat that allows larval growth to increase, leading to earlier settlement into juvenile habitat and thereby reducing the pelagic larval duration.
- Full Text:
- Date Issued: 2014
The ethical function of research and teaching
- Authors: Tabensky, Pedro
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/305738 , vital:58608 , xlink:href="https://doi.org/10.1111/j.1469-5812.2011.00813.x"
- Description: It is the epistemic as well as the ethical responsibility of academics to aim to approach their research and teaching with a proper understanding of the ultimate ethical purpose or telos of their defining activities and products,which is the practical aim of promoting human flourishing. Minimally, academics should aim at understanding, and a key component of understanding is to understand the ideal ethical purpose of what is being researched and taught. For instance, sadistic Nazi medical researchers and teachers—Mengeles of sorts—in addition to having reprehensible commitments,would be significantly ignorant about their own intellectual concerns by virtue of their abject (belief-expressing) commitments. I will show that insights drawn from extreme cases such as this one apply across disciplines and in less extreme cases.
- Full Text:
- Date Issued: 2014
- Authors: Tabensky, Pedro
- Date: 2014
- Subjects: To be catalogued
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/305738 , vital:58608 , xlink:href="https://doi.org/10.1111/j.1469-5812.2011.00813.x"
- Description: It is the epistemic as well as the ethical responsibility of academics to aim to approach their research and teaching with a proper understanding of the ultimate ethical purpose or telos of their defining activities and products,which is the practical aim of promoting human flourishing. Minimally, academics should aim at understanding, and a key component of understanding is to understand the ideal ethical purpose of what is being researched and taught. For instance, sadistic Nazi medical researchers and teachers—Mengeles of sorts—in addition to having reprehensible commitments,would be significantly ignorant about their own intellectual concerns by virtue of their abject (belief-expressing) commitments. I will show that insights drawn from extreme cases such as this one apply across disciplines and in less extreme cases.
- Full Text:
- Date Issued: 2014
The "old-new" challenges of water, sanitation and bioremediation in developing countries
- Authors: Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75982 , vital:30489 , DOI: 10.4172/2155-6199.1000e152
- Description: Developing countries face challenges in the development of infrastructure and population growth. These lead to “side-effects" such as uncontrolled urbanization and the fact that basic services such as water and sanitation are lagging behind the actual needs on the ground. Historical challenges, lack of skilled staff and often lack of sustained funding are some of the reasons for the status quo. Extent of water and sanitation coverage often forces national and local governments to install the minimum-standard solutions, e.g. the ventilated improved pit latrines. This improves the public health status in the short-term, but causes problem in the long run due to the lack of regular maintenance such as through lack emptying of pits. Sometimes, construction of these facilities is of inferior standard. Pits are often built without lining or zero consideration is given to the local conditions in terms of soil properties, water table and the number of toilet users.
- Full Text:
- Date Issued: 2014
- Authors: Tandlich, Roman
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/75982 , vital:30489 , DOI: 10.4172/2155-6199.1000e152
- Description: Developing countries face challenges in the development of infrastructure and population growth. These lead to “side-effects" such as uncontrolled urbanization and the fact that basic services such as water and sanitation are lagging behind the actual needs on the ground. Historical challenges, lack of skilled staff and often lack of sustained funding are some of the reasons for the status quo. Extent of water and sanitation coverage often forces national and local governments to install the minimum-standard solutions, e.g. the ventilated improved pit latrines. This improves the public health status in the short-term, but causes problem in the long run due to the lack of regular maintenance such as through lack emptying of pits. Sometimes, construction of these facilities is of inferior standard. Pits are often built without lining or zero consideration is given to the local conditions in terms of soil properties, water table and the number of toilet users.
- Full Text:
- Date Issued: 2014
Sequence and domain conservation of the coelacanth Hsp40 and Hsp90 chaperones suggests conservation of function
- Tastan Bishop, Özlem, Edkins, Adrienne L, Blatch, Gregory L
- Authors: Tastan Bishop, Özlem , Edkins, Adrienne L , Blatch, Gregory L
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/126932 , vital:35936 , https://doi.10.1002/jez.b.22541
- Description: Molecular chaperones and their associated co‐chaperones play an important role in preserving and regulating the active conformational state of cellular proteins. The chaperone complement of the Indonesian Coelacanth, Latimeria menadoensis, was elucidated using transcriptomic sequences. Heat shock protein 90 (Hsp90) and heat shock protein 40 (Hsp40) chaperones, and associated cochaperones were focused on, and homologous human sequences were used to search the sequence databases. Coelacanth homologs of the cytosolic, mitochondrial and endoplasmic reticulum (ER) homologs of human Hsp90 were identified, as well as all of the major co‐chaperones of the cytosolic isoform. Most of the human Hsp40s were found to have coelacanth homologs, and the data suggested that all of the chaperone machinery for protein folding at the ribosome, protein translocation to cellular compartments such as the ER and protein degradation were conserved. Some interesting similarities and differences were identified when interrogating human, mouse, and zebrafish homologs. For example, DnaJB13 is predicted to be a non‐functional Hsp40 in humans, mouse, and zebrafish due to a corrupted histidine‐proline‐aspartic acid (HPD) motif, while the coelacanth homolog has an intact HPD. These and other comparisons enabled important functional and evolutionary questions to be posed for future experimental studies.
- Full Text:
- Date Issued: 2014
- Authors: Tastan Bishop, Özlem , Edkins, Adrienne L , Blatch, Gregory L
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/126932 , vital:35936 , https://doi.10.1002/jez.b.22541
- Description: Molecular chaperones and their associated co‐chaperones play an important role in preserving and regulating the active conformational state of cellular proteins. The chaperone complement of the Indonesian Coelacanth, Latimeria menadoensis, was elucidated using transcriptomic sequences. Heat shock protein 90 (Hsp90) and heat shock protein 40 (Hsp40) chaperones, and associated cochaperones were focused on, and homologous human sequences were used to search the sequence databases. Coelacanth homologs of the cytosolic, mitochondrial and endoplasmic reticulum (ER) homologs of human Hsp90 were identified, as well as all of the major co‐chaperones of the cytosolic isoform. Most of the human Hsp40s were found to have coelacanth homologs, and the data suggested that all of the chaperone machinery for protein folding at the ribosome, protein translocation to cellular compartments such as the ER and protein degradation were conserved. Some interesting similarities and differences were identified when interrogating human, mouse, and zebrafish homologs. For example, DnaJB13 is predicted to be a non‐functional Hsp40 in humans, mouse, and zebrafish due to a corrupted histidine‐proline‐aspartic acid (HPD) motif, while the coelacanth homolog has an intact HPD. These and other comparisons enabled important functional and evolutionary questions to be posed for future experimental studies.
- Full Text:
- Date Issued: 2014
Bioinformatics education—perspectives and challenges out of Africa
- Tastan Bishop, Özlem, Adebiyi, Ezekiel F, Alzohairy, Ahmed M, Everett, Dean B, Ghedira, Kais, Ghouila, Amel, Kumuthini, Judit, Mulder, Nicola J, Panji, Sumir, Patterton, Hugh-G
- Authors: Tastan Bishop, Özlem , Adebiyi, Ezekiel F , Alzohairy, Ahmed M , Everett, Dean B , Ghedira, Kais , Ghouila, Amel , Kumuthini, Judit , Mulder, Nicola J , Panji, Sumir , Patterton, Hugh-G
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123244 , vital:35420 , https://doi.10.1093/bib/bbu022
- Description: The discipline of bioinformatics has developed rapidly since the complete sequencing of the first genomes in the 1990s.The development of many high-throughput techniques during the last decades has ensured that bioinformatics has grown into a discipline that overlaps with, and is required for, the modern practice of virtually every field in the life sciences. This has placed a scientific premium on the availability of skilled bioinformaticians, a qualification that is extremely scarce on the African continent. The reasons for this are numerous, although the absence of a skilled bioinformatician at academic institutions to initiate a training process and build sustained capacity seems to be a common African shortcoming.This dearth of bioinformatics expertise has had a knock-on effect on the establishment of many modern high-throughput projects at African institutes, including the comprehensive and systematic analysis of genomes from African populations, which are among the most genetically diverse anywhere on the planet. Recent funding initiatives from the National Institutes of Health and theWellcomeTrust are aimed at ameliorating this shortcoming. In this paper, we discuss the problems that have limited the establishment of the bioinformatics field in Africa, as well as propose specific actions that will help with the education and training of bioinformaticians on the continent. This is an absolute requirement in anticipation of a boom in high-throughput approaches to human health issues unique to data from African populations.
- Full Text:
- Date Issued: 2014
- Authors: Tastan Bishop, Özlem , Adebiyi, Ezekiel F , Alzohairy, Ahmed M , Everett, Dean B , Ghedira, Kais , Ghouila, Amel , Kumuthini, Judit , Mulder, Nicola J , Panji, Sumir , Patterton, Hugh-G
- Date: 2014
- Language: English
- Type: text , article
- Identifier: http://hdl.handle.net/10962/123244 , vital:35420 , https://doi.10.1093/bib/bbu022
- Description: The discipline of bioinformatics has developed rapidly since the complete sequencing of the first genomes in the 1990s.The development of many high-throughput techniques during the last decades has ensured that bioinformatics has grown into a discipline that overlaps with, and is required for, the modern practice of virtually every field in the life sciences. This has placed a scientific premium on the availability of skilled bioinformaticians, a qualification that is extremely scarce on the African continent. The reasons for this are numerous, although the absence of a skilled bioinformatician at academic institutions to initiate a training process and build sustained capacity seems to be a common African shortcoming.This dearth of bioinformatics expertise has had a knock-on effect on the establishment of many modern high-throughput projects at African institutes, including the comprehensive and systematic analysis of genomes from African populations, which are among the most genetically diverse anywhere on the planet. Recent funding initiatives from the National Institutes of Health and theWellcomeTrust are aimed at ameliorating this shortcoming. In this paper, we discuss the problems that have limited the establishment of the bioinformatics field in Africa, as well as propose specific actions that will help with the education and training of bioinformaticians on the continent. This is an absolute requirement in anticipation of a boom in high-throughput approaches to human health issues unique to data from African populations.
- Full Text:
- Date Issued: 2014